Wall clock time and date at job start Tue Mar 31 2020 23:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99934 * 2 1 4 4 H 1.08999 * 109.49744 * 30.06822 * 3 2 1 5 5 C 1.53040 * 109.49989 * 270.00603 * 3 2 1 6 6 C 1.53045 * 109.53728 * 301.37775 * 5 3 2 7 7 C 1.53193 * 109.31172 * 298.63818 * 6 5 3 8 8 H 1.08995 * 109.70311 * 294.77341 * 7 6 5 9 9 C 1.52998 * 109.58299 * 174.42149 * 7 6 5 10 10 N 1.46926 * 108.77778 * 54.63379 * 7 6 5 11 11 S 1.65596 * 120.63037 * 126.36419 * 10 7 6 12 12 O 1.42099 * 106.40568 * 330.56861 * 11 10 7 13 13 O 1.42097 * 106.40360 * 197.64675 * 11 10 7 14 14 C 1.76204 * 107.21653 * 84.10471 * 11 10 7 15 15 C 1.38659 * 119.87340 * 90.00043 * 14 11 10 16 16 C 1.38615 * 120.50226 * 179.97438 * 15 14 11 17 17 C 1.37638 * 120.24828 * 359.97438 * 16 15 14 18 18 C 1.40698 * 119.74034 * 0.02562 * 17 16 15 19 19 C 1.41403 * 120.23934 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99811 * 209.37790 * 19 18 17 21 21 C 1.39938 * 119.99913 * 29.65366 * 19 18 17 22 22 N 1.30822 * 120.00308 * 10.88249 * 21 19 18 23 23 Si 1.86806 * 119.99934 * 190.88394 * 21 19 18 24 24 H 1.48502 * 109.47118 * 59.99607 * 23 21 19 25 25 H 1.48498 * 109.47386 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.47048 * 300.00119 * 23 21 19 27 27 C 1.37594 * 119.87785 * 270.23908 * 14 11 10 28 28 C 1.46917 * 118.73707 * 306.64243 * 10 7 6 29 29 H 1.09003 * 109.47017 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46999 * 299.99530 * 1 2 3 31 31 H 1.09000 * 109.47366 * 59.99830 * 1 2 3 32 32 H 1.08998 * 109.45864 * 181.36245 * 5 3 2 33 33 H 1.08998 * 109.45179 * 61.39519 * 5 3 2 34 34 H 1.09002 * 109.49641 * 178.68455 * 6 5 3 35 35 H 1.08998 * 109.52037 * 58.60462 * 6 5 3 36 36 H 1.09009 * 109.47180 * 310.50877 * 9 7 6 37 37 H 1.09003 * 109.47397 * 70.50582 * 9 7 6 38 38 H 1.09002 * 109.47380 * 190.51046 * 9 7 6 39 39 H 1.08001 * 119.75063 * 359.97438 * 15 14 11 40 40 H 1.08001 * 119.87678 * 180.02562 * 16 15 14 41 41 H 1.08001 * 120.12568 * 180.02562 * 17 16 15 42 42 H 0.97000 * 119.99709 * 179.97438 * 22 21 19 43 43 H 1.07999 * 120.12982 * 0.04103 * 27 14 11 44 44 H 1.09007 * 109.58830 * 173.14549 * 28 10 7 45 45 H 1.09000 * 109.58754 * 293.56967 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3458 1.9995 0.5148 5 6 2.2179 1.7722 -1.4426 6 6 3.1243 0.7807 -2.1759 7 6 4.4891 0.7332 -1.4818 8 1 4.9854 1.6986 -1.5804 9 6 5.3527 -0.3552 -2.1226 10 7 4.2859 0.4268 -0.0593 11 16 5.0820 -0.8383 0.6534 12 8 5.2979 -1.8029 -0.3675 13 8 4.3843 -1.1242 1.8578 14 6 6.6743 -0.2516 1.1280 15 6 6.8589 0.3049 2.3846 16 6 8.1060 0.7701 2.7717 17 6 9.1763 0.6835 1.9106 18 6 9.0005 0.1207 0.6331 19 6 10.0927 0.0271 -0.2602 20 1 9.9227 0.0598 -1.3262 21 6 11.3932 -0.1138 0.2370 22 7 11.5843 -0.3719 1.5052 23 14 12.8564 0.0669 -0.9102 24 1 12.8478 1.4239 -1.5134 25 1 14.1134 -0.1255 -0.1433 26 1 12.7710 -0.9534 -1.9858 27 6 7.7286 -0.3428 0.2486 28 6 3.3582 1.2603 0.7173 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.6834 2.7577 -1.4419 33 1 1.2541 1.8262 -1.9489 34 1 3.2528 1.1013 -3.2098 35 1 2.6712 -0.2104 -2.1559 36 1 4.7824 -1.2822 -2.1843 37 1 5.6471 -0.0425 -3.1245 38 1 6.2437 -0.5164 -1.5158 39 1 6.0248 0.3764 3.0669 40 1 8.2385 1.2013 3.7530 41 1 10.1471 1.0462 2.2144 42 1 12.4857 -0.4699 1.8497 43 1 7.5816 -0.7725 -0.7312 44 1 3.2275 0.8327 1.7114 45 1 3.7581 2.2708 0.8016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867634297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:45 Heat of formation + Delta-G solvation = -87.414791 kcal Electronic energy + Delta-G solvation = -28877.249877 eV Core-core repulsion = 24987.009621 eV Total energy + Delta-G solvation = -3890.240256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.44312 -37.66092 -37.13877 -36.38455 -35.17631 -33.77988 -32.07944 -31.87745 -30.05613 -29.78356 -27.32489 -26.19186 -25.44752 -24.11264 -22.06540 -21.80823 -20.99599 -20.33346 -18.58334 -17.74369 -16.93476 -16.39455 -15.99928 -15.84588 -15.36591 -15.18459 -15.16710 -14.69020 -14.41116 -13.93030 -13.77551 -13.41790 -13.31047 -13.20649 -13.05920 -12.66233 -12.40585 -12.08480 -11.93068 -11.70261 -11.61728 -11.34677 -11.31863 -11.29385 -11.16820 -11.02520 -10.97057 -10.91968 -10.73180 -10.59969 -10.57321 -9.84130 -9.70388 -9.67933 -9.45306 -9.34075 -8.64677 -7.99254 -7.62956 -6.84040 -4.52901 1.07300 2.23353 2.65563 3.01855 3.04495 3.08636 3.47867 3.76336 3.86553 4.38722 4.50150 4.65538 4.67460 4.89470 4.95745 5.06967 5.15371 5.19189 5.24929 5.38800 5.43622 5.49302 5.53448 5.66029 5.68209 5.73847 5.86335 5.90349 5.98084 6.03182 6.13519 6.27009 6.35616 6.42234 6.66510 6.74735 6.80620 6.93084 7.00179 7.09793 7.18525 7.25321 7.39102 7.73308 7.83600 7.96539 8.42431 8.70763 8.74429 10.11847 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020699 B = 0.003528 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.418032 B = 7934.760418 C = 8522.051374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.076 3.924 4 H 0.069 0.931 5 C -0.138 4.138 6 C -0.121 4.121 7 C 0.157 3.843 8 H 0.072 0.928 9 C -0.189 4.189 10 N -0.989 5.989 11 S 2.689 3.311 12 O -0.965 6.965 13 O -0.975 6.975 14 C -0.636 4.636 15 C -0.141 4.141 16 C -0.124 4.124 17 C -0.110 4.110 18 C 0.093 3.907 19 C -0.464 4.464 20 H 0.081 0.919 21 C 0.073 3.927 22 N -0.804 5.804 23 Si 0.915 3.085 24 H -0.264 1.264 25 H -0.278 1.278 26 H -0.264 1.264 27 C -0.127 4.127 28 C 0.122 3.878 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.283 0.717 43 H 0.117 0.883 44 H 0.101 0.899 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.135 6.416 -4.468 17.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C 0.017 3.983 4 H 0.087 0.913 5 C -0.176 4.176 6 C -0.160 4.160 7 C 0.051 3.949 8 H 0.090 0.910 9 C -0.246 4.246 10 N -0.826 5.826 11 S 2.787 3.213 12 O -0.955 6.955 13 O -0.965 6.965 14 C -0.728 4.728 15 C -0.162 4.162 16 C -0.144 4.144 17 C -0.130 4.130 18 C 0.089 3.911 19 C -0.494 4.494 20 H 0.099 0.901 21 C -0.144 4.144 22 N -0.430 5.430 23 Si 0.739 3.261 24 H -0.188 1.188 25 H -0.203 1.203 26 H -0.189 1.189 27 C -0.148 4.148 28 C -0.004 4.004 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.143 0.857 42 H 0.094 0.906 43 H 0.135 0.865 44 H 0.119 0.881 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.183 5.340 -4.177 16.628 hybrid contribution 1.114 0.830 -0.269 1.415 sum -14.069 6.170 -4.446 15.993 Atomic orbital electron populations 1.22780 0.81731 1.02655 0.99523 1.88040 1.18958 1.27233 1.94922 1.22443 0.94758 0.85133 0.96005 0.91262 1.21970 1.00172 0.99495 0.95995 1.21832 0.95169 1.00653 0.98382 1.20974 0.95649 0.99382 0.78909 0.90985 1.22910 1.01680 0.98839 1.01214 1.57684 1.56702 1.50584 1.17607 1.01814 0.73801 0.73195 0.72491 1.93619 1.86414 1.58822 1.56680 1.93464 1.73262 1.82862 1.46917 1.29953 1.19775 1.18879 1.04157 1.20107 0.97532 1.04179 0.94416 1.20839 0.93498 1.01496 0.98541 1.21670 0.97806 0.98539 0.94981 1.17692 0.91611 0.88966 0.92810 1.19541 0.90440 1.44761 0.94658 0.90100 1.25900 1.00697 0.92162 0.95633 1.69737 1.24274 1.34530 1.14447 0.86259 0.79277 0.80013 0.80565 1.18820 1.20303 1.18856 1.20934 0.93456 1.02150 0.98213 1.21423 0.87156 0.96205 0.95588 0.89808 0.94167 0.94383 0.90857 0.91909 0.91186 0.90567 0.89013 0.92037 0.89927 0.87688 0.88352 0.85705 0.90625 0.86494 0.88071 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.37 16 2 O -0.37 -4.92 9.54 -35.23 -0.34 -5.26 16 3 C 0.08 0.84 2.94 -26.83 -0.08 0.77 16 4 H 0.07 0.59 7.79 -51.93 -0.40 0.19 16 5 C -0.14 -1.35 5.60 -26.69 -0.15 -1.50 16 6 C -0.12 -1.40 5.22 -26.61 -0.14 -1.54 16 7 C 0.16 2.19 3.52 -67.60 -0.24 1.95 16 8 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 9 C -0.19 -2.97 7.56 37.16 0.28 -2.69 16 10 N -0.99 -15.63 3.24 -106.72 -0.35 -15.98 16 11 S 2.69 53.66 5.28 -107.50 -0.57 53.10 16 12 O -0.96 -20.64 12.53 -57.17 -0.72 -21.35 16 13 O -0.97 -21.15 15.72 -57.17 -0.90 -22.05 16 14 C -0.64 -14.23 5.96 -39.66 -0.24 -14.47 16 15 C -0.14 -3.13 9.53 -39.29 -0.37 -3.51 16 16 C -0.12 -2.82 10.02 -39.66 -0.40 -3.22 16 17 C -0.11 -2.76 8.65 -38.87 -0.34 -3.09 16 18 C 0.09 2.40 5.54 -106.82 -0.59 1.80 16 19 C -0.46 -11.91 9.06 -37.74 -0.34 -12.26 16 20 H 0.08 1.97 7.87 -52.49 -0.41 1.55 16 21 C 0.07 1.78 5.25 -17.35 -0.09 1.69 16 22 N -0.80 -20.34 10.91 55.55 0.61 -19.73 16 23 Si 0.91 18.26 29.57 -169.99 -5.03 13.23 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 25 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 27 C -0.13 -3.05 8.64 -38.87 -0.34 -3.38 16 28 C 0.12 1.60 6.13 -3.94 -0.02 1.58 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.04 0.29 7.90 -51.93 -0.41 -0.12 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.53 7.90 -51.93 -0.41 0.12 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.00 7.58 -51.93 -0.39 0.60 16 36 H 0.09 1.54 6.59 -51.92 -0.34 1.20 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.50 2.86 -51.93 -0.15 1.36 16 39 H 0.11 2.11 7.60 -52.49 -0.40 1.71 16 40 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 41 H 0.13 3.18 6.30 -52.49 -0.33 2.85 16 42 H 0.28 6.53 8.30 -40.82 -0.34 6.20 16 43 H 0.12 2.67 5.44 -52.49 -0.29 2.39 16 44 H 0.10 1.42 6.79 -51.93 -0.35 1.07 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -30.92 360.45 -10.22 -41.13 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.40 Total: 7.97 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: -1.96 Total: -36.49 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.26 Total: -35.71 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -1.95 Total: -48.66 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: 53.66 SS G_CDS: -0.57 Total: 53.10 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.92 -10.22 -41.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867634297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.282 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds