Wall clock time and date at job start Tue Mar 31 2020 23:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99934 * 2 1 4 4 H 1.08999 * 109.49744 * 30.06822 * 3 2 1 5 5 C 1.53040 * 109.49989 * 270.00603 * 3 2 1 6 6 C 1.53045 * 109.53728 * 301.37775 * 5 3 2 7 7 C 1.53193 * 109.31172 * 298.63818 * 6 5 3 8 8 H 1.08995 * 109.70311 * 294.77341 * 7 6 5 9 9 C 1.52998 * 109.58299 * 174.42149 * 7 6 5 10 10 N 1.46926 * 108.77778 * 54.63379 * 7 6 5 11 11 S 1.65596 * 120.63037 * 126.36419 * 10 7 6 12 12 O 1.42099 * 106.40568 * 330.56861 * 11 10 7 13 13 O 1.42097 * 106.40360 * 197.64675 * 11 10 7 14 14 C 1.76204 * 107.21653 * 84.10471 * 11 10 7 15 15 C 1.38659 * 119.87340 * 90.00043 * 14 11 10 16 16 C 1.38615 * 120.50226 * 179.97438 * 15 14 11 17 17 C 1.37638 * 120.24828 * 359.97438 * 16 15 14 18 18 C 1.40698 * 119.74034 * 0.02562 * 17 16 15 19 19 C 1.41403 * 120.23934 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99811 * 209.37790 * 19 18 17 21 21 C 1.39938 * 119.99913 * 29.65366 * 19 18 17 22 22 N 1.30822 * 120.00308 * 10.88249 * 21 19 18 23 23 Si 1.86806 * 119.99934 * 190.88394 * 21 19 18 24 24 H 1.48502 * 109.47118 * 59.99607 * 23 21 19 25 25 H 1.48498 * 109.47386 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.47048 * 300.00119 * 23 21 19 27 27 C 1.37594 * 119.87785 * 270.23908 * 14 11 10 28 28 C 1.46917 * 118.73707 * 306.64243 * 10 7 6 29 29 H 1.09003 * 109.47017 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46999 * 299.99530 * 1 2 3 31 31 H 1.09000 * 109.47366 * 59.99830 * 1 2 3 32 32 H 1.08998 * 109.45864 * 181.36245 * 5 3 2 33 33 H 1.08998 * 109.45179 * 61.39519 * 5 3 2 34 34 H 1.09002 * 109.49641 * 178.68455 * 6 5 3 35 35 H 1.08998 * 109.52037 * 58.60462 * 6 5 3 36 36 H 1.09009 * 109.47180 * 310.50877 * 9 7 6 37 37 H 1.09003 * 109.47397 * 70.50582 * 9 7 6 38 38 H 1.09002 * 109.47380 * 190.51046 * 9 7 6 39 39 H 1.08001 * 119.75063 * 359.97438 * 15 14 11 40 40 H 1.08001 * 119.87678 * 180.02562 * 16 15 14 41 41 H 1.08001 * 120.12568 * 180.02562 * 17 16 15 42 42 H 0.97000 * 119.99709 * 179.97438 * 22 21 19 43 43 H 1.07999 * 120.12982 * 0.04103 * 27 14 11 44 44 H 1.09007 * 109.58830 * 173.14549 * 28 10 7 45 45 H 1.09000 * 109.58754 * 293.56967 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3458 1.9995 0.5148 5 6 2.2179 1.7722 -1.4426 6 6 3.1243 0.7807 -2.1759 7 6 4.4891 0.7332 -1.4818 8 1 4.9854 1.6986 -1.5804 9 6 5.3527 -0.3552 -2.1226 10 7 4.2859 0.4268 -0.0593 11 16 5.0820 -0.8383 0.6534 12 8 5.2979 -1.8029 -0.3675 13 8 4.3843 -1.1242 1.8578 14 6 6.6743 -0.2516 1.1280 15 6 6.8589 0.3049 2.3846 16 6 8.1060 0.7701 2.7717 17 6 9.1763 0.6835 1.9106 18 6 9.0005 0.1207 0.6331 19 6 10.0927 0.0271 -0.2602 20 1 9.9227 0.0598 -1.3262 21 6 11.3932 -0.1138 0.2370 22 7 11.5843 -0.3719 1.5052 23 14 12.8564 0.0669 -0.9102 24 1 12.8478 1.4239 -1.5134 25 1 14.1134 -0.1255 -0.1433 26 1 12.7710 -0.9534 -1.9858 27 6 7.7286 -0.3428 0.2486 28 6 3.3582 1.2603 0.7173 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.6834 2.7577 -1.4419 33 1 1.2541 1.8262 -1.9489 34 1 3.2528 1.1013 -3.2098 35 1 2.6712 -0.2104 -2.1559 36 1 4.7824 -1.2822 -2.1843 37 1 5.6471 -0.0425 -3.1245 38 1 6.2437 -0.5164 -1.5158 39 1 6.0248 0.3764 3.0669 40 1 8.2385 1.2013 3.7530 41 1 10.1471 1.0462 2.2144 42 1 12.4857 -0.4699 1.8497 43 1 7.5816 -0.7725 -0.7312 44 1 3.2275 0.8327 1.7114 45 1 3.7581 2.2708 0.8016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867634297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:44 Heat of formation + Delta-G solvation = -106.995684 kcal Electronic energy + Delta-G solvation = -28878.098968 eV Core-core repulsion = 24987.009621 eV Total energy + Delta-G solvation = -3891.089347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.37983 -39.47791 -38.60700 -37.54259 -36.82786 -35.62720 -33.11075 -32.89391 -31.90501 -31.59099 -28.30125 -27.33245 -27.02414 -25.11159 -23.60991 -23.15054 -22.81677 -21.30323 -20.22247 -19.29436 -18.21405 -17.80271 -17.50025 -16.93660 -16.78618 -16.57909 -16.35662 -16.15420 -15.68481 -15.32747 -15.18017 -14.82606 -14.77008 -14.37985 -14.04115 -13.97405 -13.74305 -13.70236 -13.23873 -13.09130 -13.02320 -13.00401 -12.93437 -12.83822 -12.60736 -12.37379 -12.26689 -12.21181 -11.90934 -11.82822 -11.63686 -11.55065 -11.21454 -11.13502 -11.01282 -10.50671 -9.90394 -9.72341 -9.51267 -8.67209 -6.46678 -0.48387 0.41213 0.83645 1.38038 1.47719 1.50088 2.10226 2.19477 2.60992 2.85375 2.95367 3.43220 3.49740 3.70057 3.86690 4.01217 4.09905 4.17596 4.27420 4.40313 4.43344 4.44742 4.59656 4.63847 4.68779 4.73287 4.77620 4.82394 4.88570 4.89506 4.93048 5.00662 5.07236 5.11336 5.21565 5.23026 5.30611 5.41648 5.47328 5.55296 5.61591 5.80044 5.87166 5.95766 6.10248 6.41992 6.53049 6.81999 6.84906 8.30764 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020699 B = 0.003528 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.418032 B = 7934.760418 C = 8522.051374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.073 3.927 4 H 0.101 0.899 5 C -0.134 4.134 6 C -0.117 4.117 7 C 0.152 3.848 8 H 0.090 0.910 9 C -0.192 4.192 10 N -0.982 5.982 11 S 2.706 3.294 12 O -0.985 6.985 13 O -0.994 6.994 14 C -0.644 4.644 15 C -0.145 4.145 16 C -0.125 4.125 17 C -0.133 4.133 18 C 0.064 3.936 19 C -0.499 4.499 20 H 0.082 0.918 21 C 0.032 3.968 22 N -0.836 5.836 23 Si 0.987 3.013 24 H -0.256 1.256 25 H -0.269 1.269 26 H -0.261 1.261 27 C -0.140 4.140 28 C 0.108 3.892 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.114 0.886 42 H 0.290 0.710 43 H 0.120 0.880 44 H 0.087 0.913 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.589 8.284 -5.460 19.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.014 3.986 4 H 0.118 0.882 5 C -0.171 4.171 6 C -0.156 4.156 7 C 0.047 3.953 8 H 0.108 0.892 9 C -0.250 4.250 10 N -0.822 5.822 11 S 2.802 3.198 12 O -0.975 6.975 13 O -0.984 6.984 14 C -0.732 4.732 15 C -0.166 4.166 16 C -0.144 4.144 17 C -0.153 4.153 18 C 0.060 3.940 19 C -0.528 4.528 20 H 0.100 0.900 21 C -0.182 4.182 22 N -0.462 5.462 23 Si 0.807 3.193 24 H -0.180 1.180 25 H -0.193 1.193 26 H -0.186 1.186 27 C -0.161 4.161 28 C -0.016 4.016 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.131 0.869 42 H 0.100 0.900 43 H 0.137 0.863 44 H 0.105 0.895 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.629 7.215 -5.143 18.842 hybrid contribution 1.400 0.239 0.063 1.422 sum -15.229 7.454 -5.081 17.700 Atomic orbital electron populations 1.22942 0.80028 1.03193 1.01019 1.87997 1.21019 1.28719 1.95189 1.22579 0.93794 0.85149 0.97051 0.88172 1.21983 1.00813 0.99547 0.94798 1.21808 0.93624 1.00534 0.99672 1.21216 0.97230 0.99154 0.77693 0.89216 1.22872 1.00654 0.99133 1.02373 1.57423 1.56116 1.50195 1.18457 1.01246 0.72892 0.73707 0.71949 1.93606 1.86542 1.60508 1.56860 1.93429 1.73096 1.83688 1.48225 1.30433 1.21118 1.17653 1.03985 1.20464 0.98039 1.03411 0.94694 1.21157 0.93034 1.00852 0.99371 1.21671 0.98137 0.99949 0.95553 1.18062 0.92594 0.89704 0.93595 1.19833 0.91607 1.46519 0.94876 0.89982 1.26775 1.03080 0.91115 0.97198 1.69800 1.25304 1.35016 1.16106 0.85173 0.75608 0.80168 0.78318 1.17974 1.19323 1.18576 1.21059 0.93507 1.02618 0.98904 1.21815 0.88136 0.96731 0.94951 0.89944 0.92879 0.92566 0.88891 0.89964 0.88815 0.92504 0.90618 0.89562 0.92714 0.85460 0.85472 0.86859 0.89975 0.86270 0.89475 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.82 113.37 1.23 1.62 16 2 O -0.41 -10.03 9.54 -148.98 -1.42 -11.45 16 3 C 0.07 1.39 2.94 30.53 0.09 1.48 16 4 H 0.10 1.29 7.79 -2.39 -0.02 1.27 16 5 C -0.13 -2.07 5.60 30.62 0.17 -1.90 16 6 C -0.12 -2.39 5.22 30.67 0.16 -2.23 16 7 C 0.15 3.99 3.52 44.97 0.16 4.15 16 8 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 9 C -0.19 -6.01 7.56 71.98 0.54 -5.47 16 10 N -0.98 -29.93 3.24 -491.56 -1.59 -31.52 16 11 S 2.71 108.83 5.28 -56.49 -0.30 108.53 16 12 O -0.98 -43.28 12.53 -128.00 -1.60 -44.89 16 13 O -0.99 -43.25 15.72 -128.00 -2.01 -45.26 16 14 C -0.64 -29.20 5.96 22.22 0.13 -29.07 16 15 C -0.15 -6.42 9.53 22.46 0.21 -6.21 16 16 C -0.13 -5.69 10.02 22.22 0.22 -5.47 16 17 C -0.13 -6.87 8.65 22.73 0.20 -6.67 16 18 C 0.06 3.41 5.54 -21.29 -0.12 3.29 16 19 C -0.50 -26.49 9.06 23.46 0.21 -26.28 16 20 H 0.08 4.15 7.87 -2.91 -0.02 4.12 16 21 C 0.03 1.60 5.25 85.26 0.45 2.04 16 22 N -0.84 -43.33 10.91 21.82 0.24 -43.09 16 23 Si 0.99 37.64 29.57 68.60 2.03 39.67 16 24 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 25 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 26 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 27 C -0.14 -6.98 8.64 22.73 0.20 -6.79 16 28 C 0.11 2.60 6.13 86.22 0.53 3.13 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 0.70 8.09 -2.39 -0.02 0.68 16 31 H 0.06 0.69 7.90 -2.39 -0.02 0.67 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.00 7.90 -2.39 -0.02 0.98 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.40 7.58 -2.39 -0.02 1.38 16 36 H 0.07 2.58 6.59 -2.38 -0.02 2.57 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.05 2.04 2.86 -2.39 -0.01 2.03 16 39 H 0.13 4.98 7.60 -2.91 -0.02 4.95 16 40 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 41 H 0.11 6.00 6.30 -2.91 -0.02 5.98 16 42 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 43 H 0.12 5.73 5.44 -2.91 -0.02 5.71 16 44 H 0.09 2.34 6.79 -2.38 -0.02 2.33 16 45 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -69.46 360.45 0.72 -68.73 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: 1.00 Total: 33.64 kcal Atomic # 6 Polarization: -78.74 SS G_CDS: 4.38 Total: -74.36 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -1.35 Total: -74.62 kcal Atomic # 8 Polarization: -96.56 SS G_CDS: -5.04 Total: -101.60 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Atomic # 16 Polarization: 108.83 SS G_CDS: -0.30 Total: 108.53 kcal Total: -69.46 0.72 -68.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867634297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.262 kcal (2) G-P(sol) polarization free energy of solvation -69.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds