Wall clock time and date at job start Tue Mar 31 2020 23:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99920 * 2 1 4 4 H 1.08996 * 109.49859 * 330.06497 * 3 2 1 5 5 C 1.53042 * 109.52302 * 90.14878 * 3 2 1 6 6 C 1.53040 * 109.53551 * 181.33422 * 5 3 2 7 7 C 1.53628 * 109.24339 * 298.50828 * 6 5 3 8 8 H 1.09005 * 109.73725 * 295.12435 * 7 6 5 9 9 C 1.52991 * 109.66989 * 174.55030 * 7 6 5 10 10 N 1.46929 * 108.53987 * 54.85387 * 7 6 5 11 11 S 1.65607 * 120.62798 * 126.37265 * 10 7 6 12 12 O 1.42105 * 106.39827 * 328.64755 * 11 10 7 13 13 O 1.42090 * 106.40266 * 195.72913 * 11 10 7 14 14 C 1.76201 * 107.21726 * 82.18584 * 11 10 7 15 15 C 1.38662 * 119.87460 * 262.09454 * 14 11 10 16 16 C 1.38614 * 120.50112 * 179.97438 * 15 14 11 17 17 C 1.37648 * 120.24309 * 359.75856 * 16 15 14 18 18 C 1.40688 * 119.74654 * 0.49374 * 17 16 15 19 19 C 1.41400 * 120.24384 * 179.76110 * 18 17 16 20 20 H 1.08007 * 119.99722 * 149.97574 * 19 18 17 21 21 C 1.39937 * 120.00227 * 329.97744 * 19 18 17 22 22 N 1.30829 * 119.99777 * 348.71544 * 21 19 18 23 23 Si 1.86791 * 120.00464 * 168.71107 * 21 19 18 24 24 H 1.48503 * 109.47062 * 270.00296 * 23 21 19 25 25 H 1.48500 * 109.47081 * 29.99808 * 23 21 19 26 26 H 1.48499 * 109.47521 * 149.99963 * 23 21 19 27 27 C 1.37593 * 119.87594 * 82.07046 * 14 11 10 28 28 C 1.46922 * 118.74341 * 306.09940 * 10 7 6 29 29 H 1.09001 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47056 * 300.00163 * 1 2 3 31 31 H 1.09001 * 109.47183 * 59.99846 * 1 2 3 32 32 H 1.08998 * 109.45734 * 301.34721 * 5 3 2 33 33 H 1.08991 * 109.46225 * 61.31127 * 5 3 2 34 34 H 1.09000 * 109.50146 * 58.58431 * 6 5 3 35 35 H 1.09003 * 109.49939 * 178.64944 * 6 5 3 36 36 H 1.09004 * 109.47252 * 309.66115 * 9 7 6 37 37 H 1.09003 * 109.47210 * 69.65830 * 9 7 6 38 38 H 1.09002 * 109.47620 * 189.66047 * 9 7 6 39 39 H 1.07994 * 119.74864 * 359.97438 * 15 14 11 40 40 H 1.07995 * 119.87913 * 180.02562 * 16 15 14 41 41 H 1.07997 * 120.12280 * 180.27797 * 17 16 15 42 42 H 0.96999 * 120.00376 * 180.02562 * 22 21 19 43 43 H 1.08001 * 120.12669 * 0.02562 * 27 14 11 44 44 H 1.08999 * 109.59077 * 173.64773 * 28 10 7 45 45 H 1.08999 * 109.58393 * 294.07192 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 2.0000 -0.5127 5 6 2.2217 1.7712 1.4424 6 6 2.8133 3.1826 1.4430 7 6 4.1779 3.1599 0.7377 8 1 4.8782 2.5517 1.3104 9 6 4.7165 4.5863 0.6121 10 7 4.0024 2.5800 -0.6009 11 16 4.5243 3.3914 -1.9469 12 8 4.3972 4.7763 -1.6549 13 8 3.8944 2.7706 -3.0590 14 6 6.2496 3.0738 -2.1111 15 6 7.1699 3.9991 -1.6424 16 6 8.5302 3.7623 -1.7644 17 6 8.9821 2.6009 -2.3490 18 6 8.0574 1.6575 -2.8330 19 6 8.5100 0.4633 -3.4399 20 1 7.9142 -0.4352 -3.3745 21 6 9.7299 0.4454 -4.1254 22 7 10.3442 1.5682 -4.3967 23 14 10.4813 -1.1813 -4.6528 24 1 11.3642 -1.6919 -3.5734 25 1 9.3996 -2.1646 -4.9141 26 1 11.2774 -0.9808 -5.8902 27 6 6.6787 1.9084 -2.7034 28 6 3.3606 1.2639 -0.7221 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.2655 1.7781 1.9656 33 1 2.9067 1.0901 1.9472 34 1 2.1403 3.8595 0.9167 35 1 2.9413 3.5230 2.4705 36 1 3.9476 5.2286 0.1826 37 1 4.9917 4.9590 1.5988 38 1 5.5940 4.5879 -0.0345 39 1 6.8242 4.9112 -1.1789 40 1 9.2381 4.4896 -1.3954 41 1 10.0423 2.4164 -2.4390 42 1 11.1896 1.5560 -4.8721 43 1 5.9602 1.1891 -3.0678 44 1 3.2049 1.0288 -1.7750 45 1 3.9956 0.5044 -0.2660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867634298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:49 Heat of formation + Delta-G solvation = -92.153448 kcal Electronic energy + Delta-G solvation = -28568.959762 eV Core-core repulsion = 24678.514023 eV Total energy + Delta-G solvation = -3890.445739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.38147 -37.69485 -37.36495 -36.67001 -35.33455 -33.80462 -32.20528 -31.86941 -30.07784 -29.81692 -27.59891 -25.89607 -25.45859 -24.12614 -22.10699 -21.85027 -21.03282 -20.66526 -18.66525 -17.74854 -17.12201 -16.33464 -16.11992 -16.06602 -15.44625 -15.22936 -15.05067 -14.77445 -14.51683 -14.06279 -13.88752 -13.49730 -13.36581 -13.27642 -12.97089 -12.64802 -12.56076 -12.22406 -12.00141 -11.83700 -11.64219 -11.43615 -11.39205 -11.36591 -11.16610 -11.08436 -11.06554 -10.99410 -10.87180 -10.77999 -10.51223 -10.07898 -9.71344 -9.67142 -9.62336 -9.36763 -8.79629 -8.03547 -7.64803 -6.85954 -4.54547 0.92799 2.17990 2.62655 3.02184 3.05118 3.07166 3.29330 3.70315 3.86156 4.26112 4.44555 4.59664 4.67904 4.77073 4.86294 4.99689 5.14382 5.18132 5.19180 5.23693 5.34024 5.39441 5.50138 5.61969 5.67861 5.75295 5.83402 5.87407 5.91532 5.96647 6.04887 6.13901 6.24993 6.29590 6.60638 6.65769 6.68787 6.76863 6.91491 7.06301 7.09095 7.21750 7.35337 7.70027 7.81714 7.93922 8.40596 8.68524 8.72655 10.10371 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013986 B = 0.003765 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.527983 B = 7434.938652 C = 8601.101181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.078 3.922 4 H 0.065 0.935 5 C -0.138 4.138 6 C -0.124 4.124 7 C 0.153 3.847 8 H 0.077 0.923 9 C -0.188 4.188 10 N -0.994 5.994 11 S 2.685 3.315 12 O -0.968 6.968 13 O -0.971 6.971 14 C -0.634 4.634 15 C -0.145 4.145 16 C -0.123 4.123 17 C -0.109 4.109 18 C 0.093 3.907 19 C -0.464 4.464 20 H 0.082 0.918 21 C 0.073 3.927 22 N -0.803 5.803 23 Si 0.915 3.085 24 H -0.268 1.268 25 H -0.261 1.261 26 H -0.277 1.277 27 C -0.119 4.119 28 C 0.122 3.878 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.124 0.876 42 H 0.282 0.718 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.195 0.359 10.947 16.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.019 3.981 4 H 0.083 0.917 5 C -0.176 4.176 6 C -0.163 4.163 7 C 0.047 3.953 8 H 0.095 0.905 9 C -0.246 4.246 10 N -0.832 5.832 11 S 2.784 3.216 12 O -0.958 6.958 13 O -0.962 6.962 14 C -0.726 4.726 15 C -0.166 4.166 16 C -0.143 4.143 17 C -0.129 4.129 18 C 0.089 3.911 19 C -0.494 4.494 20 H 0.100 0.900 21 C -0.144 4.144 22 N -0.429 5.429 23 Si 0.739 3.261 24 H -0.193 1.193 25 H -0.185 1.185 26 H -0.202 1.202 27 C -0.140 4.140 28 C -0.004 4.004 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.142 0.858 42 H 0.093 0.907 43 H 0.127 0.873 44 H 0.121 0.879 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.443 0.780 10.259 16.145 hybrid contribution 0.964 -0.785 -0.136 1.250 sum -11.479 -0.005 10.123 15.305 Atomic orbital electron populations 1.22789 0.81099 1.02674 0.99941 1.87882 1.19603 1.27430 1.95063 1.22444 0.95192 0.84553 0.95927 0.91733 1.21990 1.01502 0.97223 0.96901 1.22016 0.96716 0.96538 1.01048 1.21118 0.96527 0.94899 0.82731 0.90503 1.22857 1.04349 0.94742 1.02680 1.57828 1.73717 1.30703 1.20940 1.01880 0.74881 0.73200 0.71609 1.93590 1.87062 1.31416 1.83763 1.93501 1.75752 1.77571 1.49374 1.29794 1.21737 1.05259 1.15787 1.20200 0.93151 0.98099 1.05167 1.20841 0.94552 0.97729 1.01145 1.21654 1.00332 0.94203 0.96701 1.17686 0.90332 0.93280 0.89766 1.19588 1.03517 0.96734 1.29530 0.90025 1.25901 0.96259 0.98082 0.94144 1.69745 1.15056 1.27557 1.30575 0.86197 0.79569 0.81774 0.78554 1.19266 1.18483 1.20208 1.20770 0.96643 0.94865 1.01718 1.21276 0.92118 0.84363 1.02618 0.89611 0.94216 0.93898 0.91792 0.90740 0.91261 0.90449 0.88776 0.91791 0.90279 0.86981 0.88287 0.85790 0.90658 0.87311 0.87910 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.37 16 2 O -0.38 -4.66 10.35 -35.23 -0.36 -5.03 16 3 C 0.08 0.95 2.76 -26.61 -0.07 0.87 16 4 H 0.06 0.76 7.79 -51.93 -0.40 0.36 16 5 C -0.14 -1.41 5.50 -26.69 -0.15 -1.56 16 6 C -0.12 -1.27 5.39 -26.38 -0.14 -1.41 16 7 C 0.15 1.96 3.53 -67.38 -0.24 1.72 16 8 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 9 C -0.19 -2.55 7.57 37.15 0.28 -2.27 16 10 N -0.99 -15.10 3.28 -106.24 -0.35 -15.44 16 11 S 2.69 50.82 5.22 -107.50 -0.56 50.26 16 12 O -0.97 -18.62 12.45 -57.17 -0.71 -19.34 16 13 O -0.97 -20.76 15.91 -57.17 -0.91 -21.67 16 14 C -0.63 -13.81 5.89 -39.66 -0.23 -14.04 16 15 C -0.15 -3.10 8.60 -39.29 -0.34 -3.44 16 16 C -0.12 -2.73 10.02 -39.66 -0.40 -3.13 16 17 C -0.11 -2.70 8.65 -38.87 -0.34 -3.04 16 18 C 0.09 2.39 5.53 -106.83 -0.59 1.80 16 19 C -0.46 -11.94 9.06 -37.74 -0.34 -12.28 16 20 H 0.08 2.01 7.87 -52.48 -0.41 1.60 16 21 C 0.07 1.79 5.23 -17.34 -0.09 1.69 16 22 N -0.80 -20.26 10.96 55.55 0.61 -19.65 16 23 Si 0.91 18.30 29.57 -169.99 -5.03 13.28 16 24 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 25 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 26 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 27 C -0.12 -2.85 9.26 -38.87 -0.36 -3.21 16 28 C 0.12 1.74 6.15 -3.71 -0.02 1.71 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.30 7.86 -51.93 -0.41 -0.11 16 31 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 32 H 0.06 0.56 7.86 -51.93 -0.41 0.15 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.35 6.51 -51.93 -0.34 1.01 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.23 3.27 -51.93 -0.17 1.06 16 39 H 0.11 2.14 5.86 -52.49 -0.31 1.83 16 40 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 41 H 0.12 3.13 6.34 -52.49 -0.33 2.80 16 42 H 0.28 6.48 8.30 -40.82 -0.34 6.15 16 43 H 0.11 2.50 7.80 -52.49 -0.41 2.09 16 44 H 0.10 1.57 6.76 -51.93 -0.35 1.22 16 45 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -29.68 362.37 -10.27 -39.95 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.48 Total: 7.38 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: -1.94 Total: -35.20 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.26 Total: -35.09 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -1.99 Total: -46.03 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.28 kcal Atomic # 16 Polarization: 50.82 SS G_CDS: -0.56 Total: 50.26 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.68 -10.27 -39.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867634298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.203 kcal (2) G-P(sol) polarization free energy of solvation -29.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds