Wall clock time and date at job start Tue Mar 31 2020 23:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99920 * 2 1 4 4 H 1.08996 * 109.49859 * 330.06497 * 3 2 1 5 5 C 1.53042 * 109.52302 * 90.14878 * 3 2 1 6 6 C 1.53040 * 109.53551 * 181.33422 * 5 3 2 7 7 C 1.53628 * 109.24339 * 298.50828 * 6 5 3 8 8 H 1.09005 * 109.73725 * 295.12435 * 7 6 5 9 9 C 1.52991 * 109.66989 * 174.55030 * 7 6 5 10 10 N 1.46929 * 108.53987 * 54.85387 * 7 6 5 11 11 S 1.65607 * 120.62798 * 126.37265 * 10 7 6 12 12 O 1.42105 * 106.39827 * 328.64755 * 11 10 7 13 13 O 1.42090 * 106.40266 * 195.72913 * 11 10 7 14 14 C 1.76201 * 107.21726 * 82.18584 * 11 10 7 15 15 C 1.38662 * 119.87460 * 262.09454 * 14 11 10 16 16 C 1.38614 * 120.50112 * 179.97438 * 15 14 11 17 17 C 1.37648 * 120.24309 * 359.75856 * 16 15 14 18 18 C 1.40688 * 119.74654 * 0.49374 * 17 16 15 19 19 C 1.41400 * 120.24384 * 179.76110 * 18 17 16 20 20 H 1.08007 * 119.99722 * 149.97574 * 19 18 17 21 21 C 1.39937 * 120.00227 * 329.97744 * 19 18 17 22 22 N 1.30829 * 119.99777 * 348.71544 * 21 19 18 23 23 Si 1.86791 * 120.00464 * 168.71107 * 21 19 18 24 24 H 1.48503 * 109.47062 * 270.00296 * 23 21 19 25 25 H 1.48500 * 109.47081 * 29.99808 * 23 21 19 26 26 H 1.48499 * 109.47521 * 149.99963 * 23 21 19 27 27 C 1.37593 * 119.87594 * 82.07046 * 14 11 10 28 28 C 1.46922 * 118.74341 * 306.09940 * 10 7 6 29 29 H 1.09001 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47056 * 300.00163 * 1 2 3 31 31 H 1.09001 * 109.47183 * 59.99846 * 1 2 3 32 32 H 1.08998 * 109.45734 * 301.34721 * 5 3 2 33 33 H 1.08991 * 109.46225 * 61.31127 * 5 3 2 34 34 H 1.09000 * 109.50146 * 58.58431 * 6 5 3 35 35 H 1.09003 * 109.49939 * 178.64944 * 6 5 3 36 36 H 1.09004 * 109.47252 * 309.66115 * 9 7 6 37 37 H 1.09003 * 109.47210 * 69.65830 * 9 7 6 38 38 H 1.09002 * 109.47620 * 189.66047 * 9 7 6 39 39 H 1.07994 * 119.74864 * 359.97438 * 15 14 11 40 40 H 1.07995 * 119.87913 * 180.02562 * 16 15 14 41 41 H 1.07997 * 120.12280 * 180.27797 * 17 16 15 42 42 H 0.96999 * 120.00376 * 180.02562 * 22 21 19 43 43 H 1.08001 * 120.12669 * 0.02562 * 27 14 11 44 44 H 1.08999 * 109.59077 * 173.64773 * 28 10 7 45 45 H 1.08999 * 109.58393 * 294.07192 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 2.0000 -0.5127 5 6 2.2217 1.7712 1.4424 6 6 2.8133 3.1826 1.4430 7 6 4.1779 3.1599 0.7377 8 1 4.8782 2.5517 1.3104 9 6 4.7165 4.5863 0.6121 10 7 4.0024 2.5800 -0.6009 11 16 4.5243 3.3914 -1.9469 12 8 4.3972 4.7763 -1.6549 13 8 3.8944 2.7706 -3.0590 14 6 6.2496 3.0738 -2.1111 15 6 7.1699 3.9991 -1.6424 16 6 8.5302 3.7623 -1.7644 17 6 8.9821 2.6009 -2.3490 18 6 8.0574 1.6575 -2.8330 19 6 8.5100 0.4633 -3.4399 20 1 7.9142 -0.4352 -3.3745 21 6 9.7299 0.4454 -4.1254 22 7 10.3442 1.5682 -4.3967 23 14 10.4813 -1.1813 -4.6528 24 1 11.3642 -1.6919 -3.5734 25 1 9.3996 -2.1646 -4.9141 26 1 11.2774 -0.9808 -5.8902 27 6 6.6787 1.9084 -2.7034 28 6 3.3606 1.2639 -0.7221 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.2655 1.7781 1.9656 33 1 2.9067 1.0901 1.9472 34 1 2.1403 3.8595 0.9167 35 1 2.9413 3.5230 2.4705 36 1 3.9476 5.2286 0.1826 37 1 4.9917 4.9590 1.5988 38 1 5.5940 4.5879 -0.0345 39 1 6.8242 4.9112 -1.1789 40 1 9.2381 4.4896 -1.3954 41 1 10.0423 2.4164 -2.4390 42 1 11.1896 1.5560 -4.8721 43 1 5.9602 1.1891 -3.0678 44 1 3.2049 1.0288 -1.7750 45 1 3.9956 0.5044 -0.2660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867634298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:48 Heat of formation + Delta-G solvation = -110.506704 kcal Electronic energy + Delta-G solvation = -28569.755619 eV Core-core repulsion = 24678.514023 eV Total energy + Delta-G solvation = -3891.241596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.34759 -39.48897 -38.69928 -37.86991 -36.92525 -35.64310 -33.21978 -32.88769 -31.91621 -31.60851 -28.49820 -27.36065 -26.73086 -25.13390 -23.63192 -23.13047 -22.84210 -21.64789 -20.27098 -19.31149 -18.31801 -17.83641 -17.49356 -17.14912 -16.98523 -16.53954 -16.37512 -16.08430 -15.79890 -15.25814 -15.22240 -14.93689 -14.83857 -14.40086 -14.20482 -13.96649 -13.76718 -13.71132 -13.43885 -13.12369 -13.04182 -13.02348 -12.98938 -12.85114 -12.62345 -12.57569 -12.21863 -12.13557 -11.99396 -11.94351 -11.70602 -11.52291 -11.31344 -11.22580 -11.15984 -10.56316 -10.00353 -9.80824 -9.51356 -8.69023 -6.48437 -0.57851 0.38711 0.82178 1.36853 1.44875 1.50283 1.95396 2.18360 2.57187 2.66444 2.88399 3.41639 3.46227 3.58956 3.81245 3.84494 4.01166 4.20460 4.24388 4.27483 4.36268 4.39308 4.53489 4.56659 4.65442 4.74264 4.80140 4.81311 4.86746 4.87531 4.89503 4.96378 5.02652 5.07878 5.11523 5.19764 5.23232 5.36688 5.40060 5.52826 5.59464 5.67990 5.86757 5.93609 6.09245 6.24535 6.51445 6.80169 6.83561 8.29592 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013986 B = 0.003765 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.527983 B = 7434.938652 C = 8601.101181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.081 3.919 4 H 0.066 0.934 5 C -0.133 4.133 6 C -0.118 4.118 7 C 0.143 3.857 8 H 0.087 0.913 9 C -0.191 4.191 10 N -0.985 5.985 11 S 2.708 3.292 12 O -0.968 6.968 13 O -1.000 7.000 14 C -0.642 4.642 15 C -0.140 4.140 16 C -0.125 4.125 17 C -0.130 4.130 18 C 0.063 3.937 19 C -0.502 4.502 20 H 0.078 0.922 21 C 0.034 3.966 22 N -0.835 5.835 23 Si 0.986 3.014 24 H -0.258 1.258 25 H -0.260 1.260 26 H -0.268 1.268 27 C -0.140 4.140 28 C 0.115 3.885 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.140 0.860 40 H 0.130 0.870 41 H 0.112 0.888 42 H 0.290 0.710 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.340 0.648 13.043 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.021 3.979 4 H 0.084 0.916 5 C -0.171 4.171 6 C -0.157 4.157 7 C 0.039 3.961 8 H 0.105 0.895 9 C -0.249 4.249 10 N -0.826 5.826 11 S 2.804 3.196 12 O -0.958 6.958 13 O -0.990 6.990 14 C -0.731 4.731 15 C -0.160 4.160 16 C -0.144 4.144 17 C -0.150 4.150 18 C 0.060 3.940 19 C -0.532 4.532 20 H 0.097 0.903 21 C -0.180 4.180 22 N -0.461 5.461 23 Si 0.807 3.193 24 H -0.183 1.183 25 H -0.184 1.184 26 H -0.193 1.193 27 C -0.161 4.161 28 C -0.011 4.011 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.074 0.926 39 H 0.158 0.842 40 H 0.147 0.853 41 H 0.130 0.870 42 H 0.101 0.899 43 H 0.123 0.877 44 H 0.102 0.898 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.561 1.083 12.355 18.377 hybrid contribution 1.188 -0.785 -0.693 1.584 sum -12.373 0.298 11.662 17.005 Atomic orbital electron populations 1.23006 0.79324 1.03967 1.00871 1.87848 1.21559 1.27456 1.95247 1.22387 0.93634 0.84807 0.97073 0.91593 1.21964 1.02677 0.97011 0.95409 1.22014 0.94730 0.96672 1.02279 1.21463 0.98742 0.94532 0.81376 0.89519 1.22843 1.03028 0.95053 1.03970 1.57578 1.72954 1.31045 1.20994 1.01250 0.73392 0.73143 0.71845 1.93599 1.86575 1.31690 1.83967 1.93461 1.75663 1.78200 1.51685 1.30342 1.24303 1.04166 1.14296 1.20610 0.92798 0.98684 1.03945 1.21194 0.95757 0.97345 1.00141 1.21653 0.99684 0.95447 0.98231 1.18036 0.91400 0.94035 0.90517 1.19843 1.05042 0.96960 1.31313 0.90340 1.26741 0.96047 1.01662 0.93579 1.69797 1.15639 1.29514 1.31195 0.85132 0.78611 0.77091 0.78484 1.18266 1.18388 1.19297 1.20833 0.96121 0.96080 1.03062 1.21393 0.93845 0.83748 1.02102 0.88256 0.92456 0.93766 0.89624 0.90689 0.91181 0.87444 0.89601 0.88628 0.92604 0.84235 0.85260 0.86998 0.89942 0.87720 0.89784 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.82 113.37 1.23 1.61 16 2 O -0.40 -9.25 10.35 -148.98 -1.54 -10.80 16 3 C 0.08 1.82 2.76 30.67 0.08 1.90 16 4 H 0.07 1.45 7.79 -2.39 -0.02 1.43 16 5 C -0.13 -2.29 5.50 30.62 0.17 -2.12 16 6 C -0.12 -1.99 5.39 30.82 0.17 -1.82 16 7 C 0.14 3.32 3.53 45.12 0.16 3.48 16 8 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 9 C -0.19 -4.66 7.57 71.98 0.54 -4.11 16 10 N -0.99 -29.08 3.28 -490.03 -1.61 -30.68 16 11 S 2.71 102.27 5.22 -56.49 -0.29 101.98 16 12 O -0.97 -36.21 12.45 -128.00 -1.59 -37.81 16 13 O -1.00 -43.66 15.91 -128.00 -2.04 -45.70 16 14 C -0.64 -28.36 5.89 22.22 0.13 -28.23 16 15 C -0.14 -5.90 8.60 22.46 0.19 -5.71 16 16 C -0.13 -5.55 10.02 22.22 0.22 -5.33 16 17 C -0.13 -6.67 8.65 22.73 0.20 -6.47 16 18 C 0.06 3.41 5.53 -21.29 -0.12 3.29 16 19 C -0.50 -27.04 9.06 23.46 0.21 -26.83 16 20 H 0.08 4.08 7.87 -2.91 -0.02 4.06 16 21 C 0.03 1.68 5.23 85.25 0.45 2.13 16 22 N -0.83 -43.32 10.96 21.82 0.24 -43.08 16 23 Si 0.99 38.12 29.57 68.60 2.03 40.15 16 24 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 25 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 26 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 27 C -0.14 -7.01 9.26 22.73 0.21 -6.80 16 28 C 0.11 3.23 6.15 86.36 0.53 3.77 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 0.69 7.86 -2.39 -0.02 0.67 16 31 H 0.04 0.67 8.09 -2.39 -0.02 0.65 16 32 H 0.09 1.15 7.86 -2.39 -0.02 1.13 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 35 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 2.25 6.51 -2.39 -0.02 2.23 16 37 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.62 3.27 -2.39 -0.01 1.61 16 39 H 0.14 5.07 5.86 -2.91 -0.02 5.06 16 40 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 41 H 0.11 5.89 6.34 -2.91 -0.02 5.87 16 42 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 43 H 0.10 5.14 7.80 -2.91 -0.02 5.12 16 44 H 0.08 2.66 6.76 -2.39 -0.02 2.65 16 45 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -66.19 362.37 0.56 -65.63 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 1.00 Total: 31.56 kcal Atomic # 6 Polarization: -75.62 SS G_CDS: 4.38 Total: -71.25 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -1.37 Total: -73.77 kcal Atomic # 8 Polarization: -89.13 SS G_CDS: -5.17 Total: -94.30 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Atomic # 16 Polarization: 102.27 SS G_CDS: -0.29 Total: 101.98 kcal Total: -66.19 0.56 -65.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867634298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.876 kcal (2) G-P(sol) polarization free energy of solvation -66.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds