Wall clock time and date at job start Tue Mar 31 2020 23:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99818 * 2 1 4 4 H 1.08997 * 109.50322 * 329.94298 * 3 2 1 5 5 C 1.53048 * 109.49286 * 90.00469 * 3 2 1 6 6 C 1.53041 * 109.53280 * 181.31431 * 5 3 2 7 7 C 1.53189 * 109.31417 * 298.63226 * 6 5 3 8 8 H 1.09008 * 109.58812 * 174.42461 * 7 6 5 9 9 C 1.52996 * 109.58900 * 294.84980 * 7 6 5 10 10 N 1.46925 * 108.77416 * 54.63905 * 7 6 5 11 11 S 1.65596 * 120.62884 * 126.36935 * 10 7 6 12 12 O 1.42100 * 106.40484 * 336.45502 * 11 10 7 13 13 O 1.42104 * 106.40235 * 203.53997 * 11 10 7 14 14 C 1.76205 * 107.22018 * 90.00055 * 11 10 7 15 15 C 1.38659 * 119.87330 * 269.97600 * 14 11 10 16 16 C 1.38611 * 120.49967 * 180.02562 * 15 14 11 17 17 C 1.37635 * 120.24705 * 0.02562 * 16 15 14 18 18 C 1.40697 * 119.74720 * 359.74650 * 17 16 15 19 19 C 1.41398 * 120.24572 * 180.27929 * 18 17 16 20 20 H 1.08001 * 119.99817 * 330.41213 * 19 18 17 21 21 C 1.39947 * 119.99889 * 150.41181 * 19 18 17 22 22 N 1.30825 * 119.99955 * 161.69903 * 21 19 18 23 23 Si 1.86805 * 120.00101 * 341.69560 * 21 19 18 24 24 H 1.48498 * 109.46722 * 95.41704 * 23 21 19 25 25 H 1.48501 * 109.47136 * 215.41810 * 23 21 19 26 26 H 1.48503 * 109.47111 * 335.41487 * 23 21 19 27 27 C 1.37589 * 119.87693 * 89.99680 * 14 11 10 28 28 C 1.46921 * 118.73731 * 306.63916 * 10 7 6 29 29 H 1.09000 * 109.47037 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46811 * 299.99136 * 1 2 3 31 31 H 1.08997 * 109.47319 * 59.99463 * 1 2 3 32 32 H 1.08994 * 109.46242 * 61.29908 * 5 3 2 33 33 H 1.09001 * 109.44953 * 301.32466 * 5 3 2 34 34 H 1.09004 * 109.49541 * 178.68400 * 6 5 3 35 35 H 1.09001 * 109.49962 * 58.58759 * 6 5 3 36 36 H 1.09001 * 109.47507 * 179.29143 * 9 7 6 37 37 H 1.09005 * 109.47005 * 299.28908 * 9 7 6 38 38 H 1.09003 * 109.47224 * 59.28951 * 9 7 6 39 39 H 1.08007 * 119.74961 * 0.03964 * 15 14 11 40 40 H 1.07998 * 119.87253 * 180.02562 * 16 15 14 41 41 H 1.08005 * 120.12490 * 180.02562 * 17 16 15 42 42 H 0.96996 * 120.00020 * 179.97438 * 22 21 19 43 43 H 1.08003 * 120.13005 * 359.96081 * 27 14 11 44 44 H 1.09002 * 109.58709 * 173.14737 * 28 10 7 45 45 H 1.08997 * 109.59076 * 293.57165 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3458 1.9996 -0.5146 5 6 2.2181 1.7720 1.4428 6 6 2.8101 3.1832 1.4440 7 6 4.1715 3.1621 0.7418 8 1 4.5522 4.1796 0.6521 9 6 5.1534 2.3136 1.5520 10 7 4.0043 2.5791 -0.5964 11 16 4.5289 3.3901 -1.9415 12 8 4.5693 4.7663 -1.5901 13 8 3.7702 2.8889 -3.0336 14 6 6.1970 2.9005 -2.2284 15 6 7.2354 3.6120 -1.6468 16 6 8.5524 3.2386 -1.8641 17 6 8.8433 2.1553 -2.6618 18 6 7.7976 1.4230 -3.2532 19 6 8.0843 0.3048 -4.0698 20 1 9.0067 0.2678 -4.6304 21 6 7.1727 -0.7539 -4.1516 22 7 7.2425 -1.6018 -5.1455 23 14 5.8565 -0.9565 -2.8416 24 1 4.5981 -0.3159 -3.3013 25 1 5.6167 -2.4020 -2.6002 26 1 6.3084 -0.3126 -1.5821 27 6 6.4644 1.8139 -3.0289 28 6 3.3575 1.2656 -0.7189 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.9016 1.0910 1.9497 33 1 1.2604 1.7795 1.9633 34 1 2.9361 3.5240 2.4717 35 1 2.1386 3.8599 0.9155 36 1 6.1177 2.2895 1.0444 37 1 5.2760 2.7478 2.5443 38 1 4.7662 1.2988 1.6447 39 1 7.0162 4.4635 -1.0195 40 1 9.3533 3.7997 -1.4057 41 1 9.8703 1.8658 -2.8295 42 1 6.6109 -2.3358 -5.2020 43 1 5.6541 1.2609 -3.4807 44 1 3.2013 1.0320 -1.7721 45 1 3.9893 0.5032 -0.2633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867634299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:53 Heat of formation + Delta-G solvation = -102.964525 kcal Electronic energy + Delta-G solvation = -29302.283798 eV Core-core repulsion = 25411.369256 eV Total energy + Delta-G solvation = -3890.914543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.57456 -37.93813 -37.21810 -36.82227 -35.44760 -33.77084 -32.37500 -31.48605 -30.71054 -30.21064 -27.83425 -26.27859 -25.37775 -24.11981 -22.58409 -22.17592 -21.25078 -20.17455 -18.38324 -17.85962 -17.45682 -16.66294 -16.53202 -15.87226 -15.47542 -15.32213 -15.12393 -14.82158 -14.69816 -14.33548 -13.80614 -13.51041 -13.44011 -13.33015 -13.09620 -12.81765 -12.52948 -12.29900 -12.22515 -12.03314 -11.98671 -11.68801 -11.59762 -11.49964 -11.34271 -11.16114 -11.10599 -10.97894 -10.84930 -10.79861 -10.58685 -10.44752 -10.03190 -9.73903 -9.69989 -9.28829 -8.89236 -8.33177 -7.85205 -7.08108 -4.64534 0.77685 1.87541 2.44319 3.00974 3.08040 3.16163 3.19824 3.65973 3.85458 4.09119 4.27479 4.52738 4.63528 4.74760 4.81080 4.92736 5.07551 5.12417 5.15752 5.19254 5.24482 5.29537 5.44607 5.52081 5.56257 5.69446 5.75459 5.79916 5.81575 5.84939 5.93252 5.96592 6.01135 6.22749 6.24788 6.38058 6.40164 6.50035 6.70002 6.89539 7.06652 7.09226 7.13914 7.39425 7.52485 7.85689 8.15662 8.42027 8.61713 9.93696 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.005811 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.099177 B = 4817.126956 C = 6163.594782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.080 3.920 4 H 0.067 0.933 5 C -0.139 4.139 6 C -0.122 4.122 7 C 0.143 3.857 8 H 0.105 0.895 9 C -0.168 4.168 10 N -0.992 5.992 11 S 2.679 3.321 12 O -0.966 6.966 13 O -0.963 6.963 14 C -0.617 4.617 15 C -0.151 4.151 16 C -0.100 4.100 17 C -0.163 4.163 18 C 0.076 3.924 19 C -0.446 4.446 20 H 0.095 0.905 21 C 0.086 3.914 22 N -0.798 5.798 23 Si 0.880 3.120 24 H -0.253 1.253 25 H -0.280 1.280 26 H -0.239 1.239 27 C -0.139 4.139 28 C 0.117 3.883 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.288 0.712 43 H 0.116 0.884 44 H 0.100 0.900 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.049 4.118 13.862 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.020 3.980 4 H 0.085 0.915 5 C -0.177 4.177 6 C -0.161 4.161 7 C 0.037 3.963 8 H 0.123 0.877 9 C -0.227 4.227 10 N -0.830 5.830 11 S 2.777 3.223 12 O -0.956 6.956 13 O -0.953 6.953 14 C -0.709 4.709 15 C -0.172 4.172 16 C -0.119 4.119 17 C -0.183 4.183 18 C 0.071 3.929 19 C -0.473 4.473 20 H 0.113 0.887 21 C -0.135 4.135 22 N -0.421 5.421 23 Si 0.705 3.295 24 H -0.179 1.179 25 H -0.207 1.207 26 H -0.162 1.162 27 C -0.160 4.160 28 C -0.009 4.009 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.129 0.871 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.099 0.901 43 H 0.133 0.867 44 H 0.118 0.882 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.520 4.288 13.178 17.398 hybrid contribution -0.076 -0.515 0.478 0.706 sum -10.596 3.773 13.655 17.691 Atomic orbital electron populations 1.22798 0.80974 1.02746 0.99977 1.87887 1.19725 1.27323 1.95065 1.22319 0.94981 0.84730 0.95959 0.91526 1.22025 1.01578 0.97246 0.96853 1.21859 0.96378 0.96778 1.01091 1.21057 0.95760 0.97995 0.81476 0.87673 1.22223 0.99884 1.00752 0.99844 1.57849 1.73322 1.30939 1.20867 1.02047 0.74896 0.73188 0.72180 1.93507 1.87908 1.30789 1.83433 1.93548 1.70108 1.80883 1.50767 1.29895 1.20774 1.08527 1.11656 1.20062 0.92241 1.00679 1.04258 1.20747 0.95395 0.96879 0.98872 1.21309 0.98307 0.98465 1.00209 1.17778 0.90782 0.93431 0.90863 1.19503 1.05692 1.00192 1.21963 0.88672 1.26141 0.97006 0.94977 0.95353 1.69664 1.33675 1.12544 1.26198 0.86788 0.81396 0.78042 0.83311 1.17858 1.20680 1.16202 1.20800 0.97761 0.96254 1.01147 1.21264 0.92459 0.84601 1.02590 0.89561 0.94147 0.93840 0.90375 0.91679 0.90198 0.91306 0.91346 0.91563 0.91804 0.87126 0.87782 0.87428 0.90100 0.86686 0.88180 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.40 16 2 O -0.38 -5.04 10.35 -35.23 -0.36 -5.40 16 3 C 0.08 1.03 2.75 -26.83 -0.07 0.95 16 4 H 0.07 0.82 7.79 -51.93 -0.40 0.42 16 5 C -0.14 -1.45 5.30 -26.69 -0.14 -1.59 16 6 C -0.12 -1.23 5.55 -26.61 -0.15 -1.38 16 7 C 0.14 1.80 3.25 -67.60 -0.22 1.58 16 8 H 0.11 1.33 6.92 -51.92 -0.36 0.97 16 9 C -0.17 -1.95 9.03 37.16 0.34 -1.62 16 10 N -0.99 -15.74 3.00 -106.72 -0.32 -16.06 16 11 S 2.68 52.34 5.73 -107.50 -0.62 51.72 16 12 O -0.97 -19.20 15.86 -57.17 -0.91 -20.10 16 13 O -0.96 -21.23 15.85 -57.17 -0.91 -22.13 16 14 C -0.62 -13.38 5.97 -39.66 -0.24 -13.61 16 15 C -0.15 -3.05 9.53 -39.29 -0.37 -3.42 16 16 C -0.10 -1.98 10.02 -39.66 -0.40 -2.38 16 17 C -0.16 -3.60 9.80 -38.87 -0.38 -3.99 16 18 C 0.08 1.88 5.10 -106.82 -0.55 1.33 16 19 C -0.45 -11.79 9.57 -37.74 -0.36 -12.15 16 20 H 0.10 2.59 8.06 -52.49 -0.42 2.17 16 21 C 0.09 2.22 5.40 -17.34 -0.09 2.13 16 22 N -0.80 -20.99 13.93 55.55 0.77 -20.21 16 23 Si 0.88 20.09 24.52 -169.99 -4.17 15.92 16 24 H -0.25 -5.70 6.71 56.52 0.38 -5.32 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.24 -5.33 6.86 56.52 0.39 -4.95 16 27 C -0.14 -3.36 6.64 -38.88 -0.26 -3.62 16 28 C 0.12 1.83 5.69 -3.93 -0.02 1.81 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.32 7.85 -51.93 -0.41 -0.09 16 31 H 0.04 0.39 8.09 -51.93 -0.42 -0.02 16 32 H 0.08 0.82 6.49 -51.93 -0.34 0.48 16 33 H 0.06 0.58 7.85 -51.93 -0.41 0.17 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.74 5.74 -51.93 -0.30 0.44 16 39 H 0.11 1.97 7.60 -52.48 -0.40 1.57 16 40 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 41 H 0.11 2.19 8.06 -52.48 -0.42 1.76 16 42 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 43 H 0.12 2.86 4.28 -52.48 -0.22 2.64 16 44 H 0.10 1.75 6.91 -51.93 -0.36 1.39 16 45 H 0.08 1.21 7.52 -51.93 -0.39 0.82 16 LS Contribution 364.52 15.07 5.49 5.49 Total: -1.00 -29.98 364.52 -9.40 -39.37 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.56 Total: 5.95 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: -1.82 Total: -34.55 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.45 Total: -36.28 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -2.18 Total: -47.64 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.17 Total: 15.92 kcal Atomic # 16 Polarization: 52.34 SS G_CDS: -0.62 Total: 51.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.98 -9.40 -39.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867634299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.590 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds