Wall clock time and date at job start Tue Mar 31 2020 23:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00524 * 2 1 4 4 H 1.09004 * 109.49664 * 30.06413 * 3 2 1 5 5 C 1.53049 * 109.49789 * 270.00375 * 3 2 1 6 6 C 1.53039 * 109.53833 * 178.68198 * 5 3 2 7 7 C 1.53195 * 109.33834 * 61.34495 * 6 5 3 8 8 H 1.08996 * 109.58902 * 65.17246 * 7 6 5 9 9 C 1.53004 * 109.58253 * 185.59515 * 7 6 5 10 10 N 1.46934 * 108.77250 * 305.41286 * 7 6 5 11 11 S 1.65596 * 120.60424 * 233.57708 * 10 7 6 12 12 O 1.42105 * 106.40293 * 28.89175 * 11 10 7 13 13 O 1.42098 * 106.40014 * 161.80803 * 11 10 7 14 14 C 1.76200 * 107.22002 * 275.35181 * 11 10 7 15 15 C 1.38659 * 119.87215 * 269.72532 * 14 11 10 16 16 C 1.38612 * 120.49888 * 179.72207 * 15 14 11 17 17 C 1.37640 * 120.25120 * 0.54930 * 16 15 14 18 18 C 1.40705 * 119.74173 * 359.73279 * 17 16 15 19 19 C 1.41396 * 120.24656 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99969 * 154.33458 * 19 18 17 21 21 C 1.39943 * 119.99616 * 334.33836 * 19 18 17 22 22 N 1.30827 * 120.00456 * 341.21694 * 21 19 18 23 23 Si 1.86806 * 119.99816 * 161.21200 * 21 19 18 24 24 H 1.48501 * 109.46845 * 94.84992 * 23 21 19 25 25 H 1.48498 * 109.47346 * 214.84885 * 23 21 19 26 26 H 1.48498 * 109.46969 * 334.85141 * 23 21 19 27 27 C 1.37589 * 119.87932 * 90.00091 * 14 11 10 28 28 C 1.46926 * 118.76369 * 53.55936 * 10 7 6 29 29 H 1.08994 * 109.47423 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46833 * 300.00485 * 1 2 3 31 31 H 1.09004 * 109.46920 * 60.00073 * 1 2 3 32 32 H 1.08999 * 109.46131 * 58.65787 * 5 3 2 33 33 H 1.09005 * 109.45736 * 298.70101 * 5 3 2 34 34 H 1.08997 * 109.49714 * 181.31280 * 6 5 3 35 35 H 1.09002 * 109.49491 * 301.37756 * 6 5 3 36 36 H 1.08997 * 109.47672 * 50.81369 * 9 7 6 37 37 H 1.09003 * 109.46933 * 170.81314 * 9 7 6 38 38 H 1.08997 * 109.47324 * 290.80691 * 9 7 6 39 39 H 1.07997 * 119.75259 * 359.97438 * 15 14 11 40 40 H 1.08004 * 119.87818 * 180.28213 * 16 15 14 41 41 H 1.08000 * 120.13093 * 179.70398 * 17 16 15 42 42 H 0.97001 * 120.00247 * 180.02562 * 22 21 19 43 43 H 1.08003 * 120.12607 * 359.97438 * 27 14 11 44 44 H 1.09004 * 109.58491 * 186.62134 * 28 10 7 45 45 H 1.09002 * 109.70592 * 66.26801 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3459 1.9995 0.5148 5 6 2.2180 1.7720 -1.4427 6 6 2.8102 3.1832 -1.4439 7 6 4.1714 3.1628 -0.7415 8 1 4.8714 2.5586 -1.3186 9 6 4.7050 4.5912 -0.6156 10 7 4.0044 2.5789 0.5965 11 16 4.5295 3.3895 1.9416 12 8 4.4502 4.7742 1.6321 13 8 3.8628 2.8015 3.0501 14 6 6.2413 3.0209 2.1377 15 6 6.6300 1.9307 2.9014 16 6 7.9728 1.6255 3.0595 17 6 8.9366 2.4099 2.4679 18 6 8.5541 3.5221 1.6955 19 6 9.5353 4.3355 1.0833 20 1 9.2912 4.9009 0.1961 21 6 10.8227 4.4079 1.6271 22 7 11.0311 4.0426 2.8660 23 14 12.2438 5.0260 0.5840 24 1 12.4404 6.4780 0.8259 25 1 13.4818 4.2914 0.9487 26 1 11.9389 4.8002 -0.8517 27 6 7.1876 3.8190 1.5371 28 6 3.3626 1.2629 0.7185 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.2605 1.7795 -1.9634 33 1 2.9016 1.0910 -1.9498 34 1 2.9361 3.5240 -2.4716 35 1 2.1384 3.8600 -0.9159 36 1 3.9372 5.2287 -0.1774 37 1 5.5880 4.5942 0.0236 38 1 4.9703 4.9684 -1.6032 39 1 5.8807 1.3125 3.3732 40 1 8.2641 0.7713 3.6529 41 1 9.9824 2.1731 2.5964 42 1 11.9234 4.0932 3.2430 43 1 6.8828 4.6700 0.9460 44 1 3.2096 1.0272 1.7717 45 1 3.9952 0.5017 0.2619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867634300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:57 Heat of formation + Delta-G solvation = -89.485280 kcal Electronic energy + Delta-G solvation = -28574.715447 eV Core-core repulsion = 24684.385408 eV Total energy + Delta-G solvation = -3890.330039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.39748 -37.69270 -37.37321 -36.67141 -35.32996 -33.84509 -32.21062 -31.85674 -30.09554 -29.82646 -27.58334 -25.87730 -25.47918 -24.13626 -22.09710 -21.86173 -21.01901 -20.66341 -18.67195 -17.79232 -17.12461 -16.32006 -16.12226 -16.04898 -15.32883 -15.22239 -15.20363 -14.73363 -14.56903 -14.05544 -13.93785 -13.50284 -13.39593 -13.28465 -12.97556 -12.67464 -12.58573 -12.15639 -11.95308 -11.83311 -11.64351 -11.42986 -11.41885 -11.33513 -11.16189 -11.08661 -11.04472 -11.03804 -10.89902 -10.65769 -10.60240 -9.99561 -9.77880 -9.68284 -9.50672 -9.33635 -8.79711 -8.03396 -7.70312 -6.93625 -4.53791 0.93466 2.18851 2.62758 2.99743 3.01288 3.07642 3.29264 3.69602 3.82540 4.26339 4.41051 4.59315 4.67713 4.79538 4.86973 4.99009 5.13860 5.17811 5.18662 5.23278 5.36302 5.40024 5.47841 5.64242 5.70249 5.77399 5.84347 5.88717 5.91166 5.97140 6.09714 6.16328 6.26716 6.31599 6.60459 6.66945 6.75159 6.85533 6.92332 7.03101 7.07500 7.21495 7.36818 7.71281 7.79199 7.92909 8.38692 8.66244 8.70917 10.02976 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018882 B = 0.003394 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.568260 B = 8247.121708 C = 8734.575023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.078 3.922 4 H 0.065 0.935 5 C -0.138 4.138 6 C -0.124 4.124 7 C 0.152 3.848 8 H 0.077 0.923 9 C -0.189 4.189 10 N -0.994 5.994 11 S 2.684 3.316 12 O -0.963 6.963 13 O -0.976 6.976 14 C -0.630 4.630 15 C -0.146 4.146 16 C -0.120 4.120 17 C -0.117 4.117 18 C 0.094 3.906 19 C -0.463 4.463 20 H 0.083 0.917 21 C 0.076 3.924 22 N -0.793 5.793 23 Si 0.910 3.090 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.259 1.259 27 C -0.131 4.131 28 C 0.124 3.876 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.122 0.878 42 H 0.284 0.716 43 H 0.117 0.883 44 H 0.101 0.899 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.325 -4.576 -7.961 16.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.019 3.981 4 H 0.083 0.917 5 C -0.176 4.176 6 C -0.164 4.164 7 C 0.047 3.953 8 H 0.095 0.905 9 C -0.247 4.247 10 N -0.832 5.832 11 S 2.783 3.217 12 O -0.953 6.953 13 O -0.966 6.966 14 C -0.722 4.722 15 C -0.167 4.167 16 C -0.140 4.140 17 C -0.136 4.136 18 C 0.090 3.910 19 C -0.492 4.492 20 H 0.101 0.899 21 C -0.142 4.142 22 N -0.418 5.418 23 Si 0.734 3.266 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.183 1.183 27 C -0.152 4.152 28 C -0.002 4.002 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.140 0.860 42 H 0.095 0.905 43 H 0.134 0.866 44 H 0.119 0.881 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.584 -4.219 -7.239 15.960 hybrid contribution 1.237 0.103 -0.489 1.334 sum -12.347 -4.116 -7.728 15.136 Atomic orbital electron populations 1.22787 0.81088 1.02647 0.99981 1.87869 1.19617 1.27501 1.95079 1.22453 0.95170 0.84512 0.96008 0.91704 1.21994 1.01503 0.97280 0.96832 1.21947 0.96772 0.96472 1.01170 1.21057 0.96570 0.95066 0.82637 0.90489 1.22916 1.04640 0.94376 1.02738 1.57827 1.73717 1.30533 1.21092 1.01920 0.74813 0.73414 0.71522 1.93636 1.87324 1.31170 1.83207 1.93476 1.74441 1.78827 1.49906 1.29780 1.21479 1.07865 1.13058 1.20079 0.96163 0.97907 1.02556 1.20810 0.93155 0.99423 1.00578 1.21589 0.98831 0.94024 0.99204 1.17670 0.91243 0.91216 0.90831 1.19575 0.94368 1.24193 1.11055 0.89917 1.25930 1.00323 0.93492 0.94495 1.69793 1.24056 1.35648 1.12256 0.86270 0.79711 0.79389 0.81270 1.19407 1.19957 1.18262 1.20854 0.93152 0.98489 1.02691 1.21230 0.92088 0.84456 1.02410 0.89631 0.93905 0.94179 0.91791 0.90756 0.90347 0.91295 0.88915 0.89844 0.91813 0.87648 0.88336 0.86040 0.90545 0.86559 0.88124 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.38 -4.51 10.35 -35.23 -0.36 -4.88 16 3 C 0.08 0.92 2.76 -26.61 -0.07 0.85 16 4 H 0.06 0.75 7.79 -51.93 -0.40 0.35 16 5 C -0.14 -1.41 5.50 -26.69 -0.15 -1.56 16 6 C -0.12 -1.32 5.36 -26.61 -0.14 -1.46 16 7 C 0.15 2.03 3.52 -67.59 -0.24 1.79 16 8 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 9 C -0.19 -2.77 7.54 37.16 0.28 -2.49 16 10 N -0.99 -15.11 3.29 -106.47 -0.35 -15.46 16 11 S 2.68 50.96 5.28 -107.50 -0.57 50.39 16 12 O -0.96 -19.30 12.45 -57.17 -0.71 -20.01 16 13 O -0.98 -20.18 15.72 -57.17 -0.90 -21.08 16 14 C -0.63 -13.80 5.96 -39.66 -0.24 -14.03 16 15 C -0.15 -3.21 9.53 -39.29 -0.37 -3.58 16 16 C -0.12 -2.71 10.02 -39.66 -0.40 -3.11 16 17 C -0.12 -2.90 8.69 -38.87 -0.34 -3.23 16 18 C 0.09 2.40 5.56 -106.82 -0.59 1.81 16 19 C -0.46 -11.71 9.04 -37.74 -0.34 -12.05 16 20 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 21 C 0.08 1.83 5.11 -17.34 -0.09 1.74 16 22 N -0.79 -19.74 11.10 55.55 0.62 -19.13 16 23 Si 0.91 17.88 29.60 -169.99 -5.03 12.85 16 24 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 25 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 26 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 27 C -0.13 -3.09 8.65 -38.88 -0.34 -3.42 16 28 C 0.12 1.71 6.15 -3.71 -0.02 1.68 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.04 0.29 7.85 -51.93 -0.41 -0.12 16 32 H 0.06 0.56 7.85 -51.93 -0.41 0.16 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.74 8.12 -51.93 -0.42 0.31 16 36 H 0.09 1.42 6.53 -51.93 -0.34 1.08 16 37 H 0.08 1.44 3.03 -51.93 -0.16 1.28 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.11 2.11 7.59 -52.49 -0.40 1.71 16 40 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 41 H 0.12 3.06 6.29 -52.49 -0.33 2.73 16 42 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 43 H 0.12 2.58 5.46 -52.48 -0.29 2.30 16 44 H 0.10 1.45 6.80 -51.93 -0.35 1.10 16 45 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -29.45 361.84 -10.25 -39.70 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.43 Total: 7.89 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: -1.96 Total: -35.72 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.27 Total: -34.59 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -1.98 Total: -45.97 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 50.96 SS G_CDS: -0.57 Total: 50.39 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.45 -10.25 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867634300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.789 kcal (2) G-P(sol) polarization free energy of solvation -29.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds