Wall clock time and date at job start Tue Mar 31 2020 23:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00007 * 2 1 4 4 H 1.09007 * 109.50101 * 30.06191 * 3 2 1 5 5 C 1.53041 * 109.49850 * 270.00065 * 3 2 1 6 6 C 1.53038 * 109.53477 * 301.37822 * 5 3 2 7 7 C 1.53184 * 109.31705 * 298.63597 * 6 5 3 8 8 H 1.09002 * 109.70814 * 294.77566 * 7 6 5 9 9 C 1.53006 * 109.59114 * 174.42089 * 7 6 5 10 10 N 1.46925 * 108.77671 * 54.63347 * 7 6 5 11 11 S 1.65599 * 120.63347 * 126.37138 * 10 7 6 12 12 O 1.42106 * 106.39965 * 4.56508 * 11 10 7 13 13 O 1.42103 * 106.40420 * 231.64996 * 11 10 7 14 14 C 1.76191 * 107.22028 * 118.10634 * 11 10 7 15 15 C 1.37643 * 120.13115 * 114.75715 * 14 11 10 16 16 C 1.38607 * 120.25071 * 180.25307 * 15 14 11 17 17 C 1.38663 * 120.50037 * 359.44080 * 16 15 14 18 18 C 1.37587 * 120.24876 * 0.28042 * 17 16 15 19 19 C 1.40704 * 120.13001 * 294.45577 * 14 11 10 20 20 C 1.41397 * 120.24100 * 359.97438 * 19 14 11 21 21 H 1.07996 * 119.99933 * 320.42895 * 20 19 14 22 22 C 1.39948 * 119.99827 * 140.42441 * 20 19 14 23 23 N 1.30817 * 119.99871 * 173.76804 * 22 20 19 24 24 Si 1.86798 * 119.99882 * 353.77519 * 22 20 19 25 25 H 1.48503 * 109.47294 * 89.66756 * 24 22 20 26 26 H 1.48506 * 109.46940 * 209.67024 * 24 22 20 27 27 H 1.48499 * 109.47161 * 329.66372 * 24 22 20 28 28 C 1.46932 * 118.73935 * 306.64801 * 10 7 6 29 29 H 1.08994 * 109.47009 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47184 * 300.00009 * 1 2 3 31 31 H 1.09000 * 109.47088 * 60.00204 * 1 2 3 32 32 H 1.09003 * 109.45910 * 181.36265 * 5 3 2 33 33 H 1.09001 * 109.45244 * 61.39310 * 5 3 2 34 34 H 1.08997 * 109.49758 * 178.68017 * 6 5 3 35 35 H 1.09003 * 109.52543 * 58.60788 * 6 5 3 36 36 H 1.08997 * 109.47053 * 290.54508 * 9 7 6 37 37 H 1.09003 * 109.46437 * 50.54343 * 9 7 6 38 38 H 1.09000 * 109.47269 * 170.54020 * 9 7 6 39 39 H 1.08006 * 119.87037 * 359.97348 * 15 14 11 40 40 H 1.08000 * 119.75340 * 179.71821 * 16 15 14 41 41 H 1.08002 * 119.87043 * 180.25056 * 17 16 15 42 42 H 1.07996 * 120.13098 * 179.97438 * 18 17 16 43 43 H 0.96993 * 120.00030 * 179.97438 * 23 22 20 44 44 H 1.08995 * 109.58848 * 173.14016 * 28 10 7 45 45 H 1.09002 * 109.58231 * 293.56446 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3458 1.9996 0.5147 5 6 2.2180 1.7721 -1.4426 6 6 3.1244 0.7806 -2.1757 7 6 4.4892 0.7330 -1.4817 8 1 4.9856 1.6984 -1.5803 9 6 5.3529 -0.3555 -2.1223 10 7 4.2859 0.4267 -0.0591 11 16 5.0821 -0.8382 0.6538 12 8 5.9623 -1.3641 -0.3301 13 8 4.0908 -1.6194 1.3069 14 6 6.1008 -0.1643 1.9236 15 6 5.8524 -0.4682 3.2429 16 6 6.6490 0.0648 4.2441 17 6 7.7106 0.8995 3.9295 18 6 7.9810 1.2123 2.6172 19 6 7.1753 0.6816 1.5926 20 6 7.4443 0.9953 0.2403 21 1 7.3502 0.2338 -0.5197 22 6 7.8323 2.2926 -0.1132 23 7 8.1987 2.5539 -1.3416 24 14 7.8273 3.6510 1.1690 25 1 9.1490 3.6992 1.8444 26 1 7.5611 4.9542 0.5084 27 1 6.7677 3.3798 2.1734 28 6 3.3581 1.2604 0.7174 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.6836 2.7577 -1.4420 33 1 1.2543 1.8260 -1.9491 34 1 3.2530 1.1010 -3.2096 35 1 2.6714 -0.2106 -2.1558 36 1 4.9468 -1.3356 -1.8721 37 1 5.3539 -0.2281 -3.2048 38 1 6.3731 -0.2780 -1.7464 39 1 5.0309 -1.1209 3.4991 40 1 6.4441 -0.1754 5.2770 41 1 8.3273 1.3059 4.7175 42 1 8.8080 1.8630 2.3743 43 1 8.4673 3.4531 -1.5867 44 1 3.2273 0.8329 1.7115 45 1 3.7581 2.2709 0.8018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867637339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:01 Heat of formation + Delta-G solvation = -73.286107 kcal Electronic energy + Delta-G solvation = -30272.221507 eV Core-core repulsion = 26382.593917 eV Total energy + Delta-G solvation = -3889.627590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.12520 -37.89493 -36.83340 -35.99045 -34.84870 -33.76012 -31.76028 -31.47289 -30.68160 -30.10410 -27.00987 -25.91438 -25.33675 -23.75871 -22.06744 -21.65285 -21.12903 -20.00820 -18.12934 -17.75188 -16.79778 -16.41988 -15.93722 -15.46396 -15.36826 -15.07525 -14.87876 -14.39635 -14.21360 -13.83013 -13.59239 -13.46813 -13.30556 -12.97492 -12.93779 -12.63245 -12.28833 -12.19805 -11.91157 -11.78833 -11.46614 -11.35183 -11.20874 -11.09057 -11.05614 -10.74040 -10.72536 -10.63993 -10.40581 -10.21790 -9.99284 -9.96434 -9.57350 -9.41595 -9.33102 -8.87666 -8.29102 -8.15335 -7.77020 -7.07137 -4.83148 1.52793 2.07116 2.49740 2.95868 3.03330 3.13320 3.78400 3.81234 4.03534 4.29379 4.73364 4.92094 5.00366 5.07373 5.16183 5.34016 5.38371 5.41756 5.49746 5.62407 5.68771 5.73150 5.80512 5.86043 5.91959 6.00074 6.02123 6.10615 6.15472 6.20477 6.24150 6.39793 6.40873 6.55678 6.64593 6.79770 6.96988 6.99415 7.05462 7.19872 7.33191 7.38714 7.45876 7.48683 7.59771 7.85213 8.28897 8.35385 8.60815 9.90376 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.006419 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.695086 B = 4361.327711 C = 5120.466173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.076 3.924 4 H 0.065 0.935 5 C -0.137 4.137 6 C -0.124 4.124 7 C 0.164 3.836 8 H 0.077 0.923 9 C -0.167 4.167 10 N -0.976 5.976 11 S 2.700 3.300 12 O -0.959 6.959 13 O -0.990 6.990 14 C -0.764 4.764 15 C 0.009 3.991 16 C -0.251 4.251 17 C -0.049 4.049 18 C -0.229 4.229 19 C 0.170 3.830 20 C -0.469 4.469 21 H 0.136 0.864 22 C 0.094 3.906 23 N -0.790 5.790 24 Si 0.897 3.103 25 H -0.267 1.267 26 H -0.287 1.287 27 H -0.243 1.243 28 C 0.135 3.865 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.288 0.712 44 H 0.084 0.916 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 2.895 0.400 10.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.016 3.984 4 H 0.083 0.917 5 C -0.174 4.174 6 C -0.163 4.163 7 C 0.059 3.941 8 H 0.095 0.905 9 C -0.225 4.225 10 N -0.813 5.813 11 S 2.799 3.201 12 O -0.950 6.950 13 O -0.980 6.980 14 C -0.857 4.857 15 C -0.010 4.010 16 C -0.271 4.271 17 C -0.068 4.068 18 C -0.248 4.248 19 C 0.165 3.835 20 C -0.496 4.496 21 H 0.154 0.846 22 C -0.127 4.127 23 N -0.413 5.413 24 Si 0.723 3.277 25 H -0.193 1.193 26 H -0.214 1.214 27 H -0.166 1.166 28 C 0.008 3.992 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.125 0.875 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.104 1.980 -0.095 10.297 hybrid contribution 0.252 1.700 1.054 2.016 sum -9.852 3.681 0.959 10.561 Atomic orbital electron populations 1.22750 0.82315 1.02393 0.99230 1.88120 1.18354 1.26945 1.94852 1.22453 0.94846 0.85058 0.96028 0.91715 1.21943 0.99890 0.99640 0.95973 1.21887 0.95944 1.00111 0.98349 1.20935 0.94329 1.00426 0.78447 0.90543 1.22846 1.04049 0.96884 0.98726 1.57362 1.56543 1.50084 1.17328 1.01383 0.73219 0.72641 0.72886 1.93723 1.66985 1.78185 1.56104 1.93464 1.60419 1.67038 1.77083 1.30219 1.16955 1.27118 1.11376 1.20463 0.95619 0.93324 0.91642 1.20559 1.01679 1.07295 0.97540 1.20873 0.95278 0.94982 0.95639 1.21349 1.02261 1.07822 0.93395 1.17174 0.86589 0.86366 0.93333 1.20381 1.37720 0.98022 0.93521 0.84649 1.26046 0.90657 0.99996 0.96029 1.69609 1.29455 1.23346 1.18880 0.86532 0.81049 0.78748 0.81363 1.19329 1.21400 1.16570 1.21214 0.87179 0.96457 0.94337 0.89985 0.94455 0.94637 0.90967 0.92278 0.91524 0.91093 0.91816 0.93932 0.86690 0.86833 0.88053 0.88260 0.87493 0.90088 0.89757 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.82 101.05 1.09 1.43 16 2 O -0.36 -5.70 9.54 -35.23 -0.34 -6.03 16 3 C 0.08 1.05 2.94 -26.83 -0.08 0.97 16 4 H 0.06 0.73 7.79 -51.92 -0.40 0.32 16 5 C -0.14 -1.75 5.60 -26.69 -0.15 -1.90 16 6 C -0.12 -1.84 5.22 -26.62 -0.14 -1.97 16 7 C 0.16 2.96 3.52 -67.60 -0.24 2.72 16 8 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 9 C -0.17 -3.27 7.45 37.16 0.28 -3.00 16 10 N -0.98 -18.66 3.16 -106.72 -0.34 -18.99 16 11 S 2.70 59.73 4.55 -107.50 -0.49 59.24 16 12 O -0.96 -22.76 10.27 -57.17 -0.59 -23.35 16 13 O -0.99 -23.16 16.64 -57.17 -0.95 -24.12 16 14 C -0.76 -17.58 5.91 -38.87 -0.23 -17.81 16 15 C 0.01 0.20 9.53 -39.66 -0.38 -0.18 16 16 C -0.25 -5.05 10.05 -39.29 -0.39 -5.44 16 17 C -0.05 -1.01 10.02 -39.66 -0.40 -1.40 16 18 C -0.23 -5.21 6.98 -38.88 -0.27 -5.48 16 19 C 0.17 4.10 4.97 -106.82 -0.53 3.57 16 20 C -0.47 -11.59 8.59 -37.74 -0.32 -11.91 16 21 H 0.14 3.55 3.87 -52.49 -0.20 3.35 16 22 C 0.09 2.22 5.50 -17.34 -0.10 2.13 16 23 N -0.79 -18.90 13.93 55.55 0.77 -18.12 16 24 Si 0.90 18.89 24.52 -169.99 -4.17 14.72 16 25 H -0.27 -5.55 6.72 56.52 0.38 -5.17 16 26 H -0.29 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.24 -5.20 6.73 56.52 0.38 -4.82 16 28 C 0.13 2.21 6.05 -3.93 -0.02 2.18 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.04 0.35 7.90 -51.93 -0.41 -0.07 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.12 7.61 -51.93 -0.40 0.72 16 36 H 0.06 1.28 6.31 -51.93 -0.33 0.95 16 37 H 0.04 0.73 8.12 -51.93 -0.42 0.31 16 38 H 0.11 2.61 4.19 -51.93 -0.22 2.39 16 39 H 0.11 2.27 7.32 -52.48 -0.38 1.88 16 40 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 42 H 0.11 2.38 5.08 -52.49 -0.27 2.11 16 43 H 0.29 6.28 8.30 -40.82 -0.34 5.94 16 44 H 0.08 1.39 7.74 -51.93 -0.40 0.99 16 45 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 353.38 15.07 5.33 5.33 Total: -1.00 -28.95 353.38 -9.05 -38.01 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.40 Total: 9.42 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: -1.88 Total: -36.09 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.44 Total: -37.12 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -1.87 Total: -53.50 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.17 Total: 14.72 kcal Atomic # 16 Polarization: 59.73 SS G_CDS: -0.49 Total: 59.24 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.95 -9.05 -38.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867637339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.280 kcal (2) G-P(sol) polarization free energy of solvation -28.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds