Wall clock time and date at job start Tue Mar 31 2020 23:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99951 * 2 1 4 4 H 1.09005 * 109.49433 * 329.99881 * 3 2 1 5 5 C 1.53039 * 109.49754 * 90.06257 * 3 2 1 6 6 C 1.53042 * 109.53639 * 181.29106 * 5 3 2 7 7 C 1.53195 * 109.33724 * 298.67860 * 6 5 3 8 8 H 1.09003 * 109.58909 * 294.83763 * 7 6 5 9 9 C 1.52997 * 109.58715 * 174.41117 * 7 6 5 10 10 N 1.46930 * 108.77086 * 54.62368 * 7 6 5 11 11 S 1.65599 * 120.62786 * 126.41748 * 10 7 6 12 12 O 1.42092 * 106.40571 * 37.41758 * 11 10 7 13 13 O 1.42095 * 106.40228 * 170.34198 * 11 10 7 14 14 C 1.76201 * 107.21471 * 283.87862 * 11 10 7 15 15 C 1.37637 * 120.12760 * 111.79547 * 14 11 10 16 16 C 1.38619 * 120.24741 * 179.97438 * 15 14 11 17 17 C 1.38649 * 120.50193 * 0.02562 * 16 15 14 18 18 C 1.37593 * 120.25121 * 0.02562 * 17 16 15 19 19 C 1.40707 * 120.12894 * 291.52309 * 14 11 10 20 20 C 1.41395 * 120.23845 * 359.97438 * 19 14 11 21 21 H 1.07992 * 120.00563 * 28.99922 * 20 19 14 22 22 C 1.39947 * 119.99180 * 208.99534 * 20 19 14 23 23 N 1.30817 * 120.00657 * 12.67821 * 22 20 19 24 24 Si 1.86806 * 119.99573 * 192.67439 * 22 20 19 25 25 H 1.48498 * 109.47406 * 90.00307 * 24 22 20 26 26 H 1.48501 * 109.47110 * 210.00401 * 24 22 20 27 27 H 1.48502 * 109.47124 * 329.99851 * 24 22 20 28 28 C 1.46921 * 118.74185 * 306.38668 * 10 7 6 29 29 H 1.08999 * 109.47696 * 299.99714 * 1 2 3 30 30 H 1.09001 * 109.46363 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46948 * 60.00579 * 1 2 3 32 32 H 1.09002 * 109.46181 * 301.33820 * 5 3 2 33 33 H 1.08994 * 109.46310 * 61.30068 * 5 3 2 34 34 H 1.09003 * 109.49586 * 178.72034 * 6 5 3 35 35 H 1.08992 * 109.50159 * 58.65018 * 6 5 3 36 36 H 1.09001 * 109.46921 * 291.27694 * 9 7 6 37 37 H 1.09002 * 109.47184 * 51.27051 * 9 7 6 38 38 H 1.08996 * 109.47116 * 171.27830 * 9 7 6 39 39 H 1.07999 * 119.87950 * 0.02562 * 15 14 11 40 40 H 1.08000 * 119.74371 * 179.97438 * 16 15 14 41 41 H 1.08002 * 119.87490 * 179.97438 * 17 16 15 42 42 H 1.08000 * 120.13339 * 179.97438 * 18 17 16 43 43 H 0.96997 * 120.00548 * 179.97438 * 23 22 20 44 44 H 1.09003 * 109.58612 * 293.82727 * 28 10 7 45 45 H 1.08992 * 109.70813 * 173.46874 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3452 1.9998 -0.5138 5 6 2.2194 1.7715 1.4426 6 6 2.8120 3.1825 1.4438 7 6 4.1724 3.1620 0.7396 8 1 4.8729 2.5570 1.3154 9 6 4.7065 4.5902 0.6139 10 7 4.0032 2.5797 -0.5987 11 16 4.5268 3.3910 -1.9441 12 8 5.7405 4.0330 -1.5786 13 8 4.4264 2.4775 -3.0279 14 6 3.3625 4.6739 -2.2654 15 6 3.7239 5.9918 -2.1013 16 6 2.8101 7.0031 -2.3539 17 6 1.5237 6.7006 -2.7733 18 6 1.1401 5.3902 -2.9430 19 6 2.0614 4.3553 -2.6961 20 6 1.6809 3.0052 -2.8742 21 1 2.1442 2.2308 -2.2810 22 6 0.7036 2.6726 -3.8191 23 7 0.3213 3.5571 -4.7039 24 14 -0.0548 0.9655 -3.8170 25 1 -1.2538 0.9575 -2.9409 26 1 -0.4502 0.5977 -5.2003 27 1 0.9366 -0.0160 -3.3081 28 6 3.3614 1.2637 -0.7207 29 1 -0.3634 0.5138 0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 -0.8900 32 1 1.2624 1.7787 1.9643 33 1 2.9035 1.0904 1.9487 34 1 2.9396 3.5226 2.4715 35 1 2.1399 3.8599 0.9172 36 1 4.0909 5.1474 -0.0923 37 1 4.6733 5.0776 1.5883 38 1 5.7357 4.5630 0.2560 39 1 4.7234 6.2390 -1.7754 40 1 3.1023 8.0345 -2.2221 41 1 0.8198 7.4965 -2.9668 42 1 0.1374 5.1567 -3.2694 43 1 -0.3557 3.3264 -5.3591 44 1 3.9957 0.5040 -0.2639 45 1 3.2070 1.0262 -1.7731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867637340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:05 Heat of formation + Delta-G solvation = -92.243158 kcal Electronic energy + Delta-G solvation = -30512.196440 eV Core-core repulsion = 26621.746810 eV Total energy + Delta-G solvation = -3890.449629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -39.10607 -37.64282 -36.94512 -36.30728 -34.84831 -33.93362 -31.88672 -31.62997 -30.28439 -29.61927 -27.26431 -25.79237 -25.34814 -23.79091 -21.85499 -21.66229 -21.19318 -20.19419 -18.02250 -17.78417 -16.99923 -16.36832 -15.83346 -15.66888 -15.33315 -15.12005 -14.85490 -14.40646 -14.14155 -13.91828 -13.56628 -13.35587 -13.20208 -12.98752 -12.75101 -12.67975 -12.14759 -12.08295 -11.84320 -11.47799 -11.43638 -11.38420 -11.24419 -11.14943 -11.05842 -11.03025 -10.78100 -10.69035 -10.54826 -10.52257 -10.23872 -9.91360 -9.89660 -9.46218 -9.43601 -9.18824 -8.44522 -8.00291 -7.62349 -7.07144 -4.78829 1.44328 2.30541 2.66995 2.92235 2.98444 3.06759 3.64471 3.74234 4.09083 4.36587 4.68881 4.94168 5.04862 5.10212 5.24716 5.29686 5.47178 5.48574 5.55001 5.60667 5.62372 5.63643 5.82399 5.90198 5.92783 5.99717 6.04539 6.09525 6.18415 6.20291 6.25154 6.32675 6.36180 6.53269 6.58031 6.72641 6.84021 6.92146 7.00103 7.17296 7.28164 7.45111 7.46951 7.61845 7.76941 7.86901 8.25196 8.47242 8.61136 9.86804 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009501 B = 0.008480 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.397441 B = 3300.998010 C = 4863.863191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.384 6.384 3 C 0.065 3.935 4 H 0.087 0.913 5 C -0.133 4.133 6 C -0.128 4.128 7 C 0.162 3.838 8 H 0.072 0.928 9 C -0.216 4.216 10 N -0.993 5.993 11 S 2.699 3.301 12 O -0.990 6.990 13 O -0.962 6.962 14 C -0.774 4.774 15 C -0.003 4.003 16 C -0.249 4.249 17 C -0.076 4.076 18 C -0.157 4.157 19 C 0.189 3.811 20 C -0.457 4.457 21 H 0.097 0.903 22 C 0.085 3.915 23 N -0.774 5.774 24 Si 0.893 3.107 25 H -0.262 1.262 26 H -0.272 1.272 27 H -0.244 1.244 28 C 0.124 3.876 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.287 0.713 44 H 0.070 0.930 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.019 -2.802 9.773 10.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.302 6.302 3 C 0.006 3.994 4 H 0.105 0.895 5 C -0.171 4.171 6 C -0.168 4.168 7 C 0.056 3.944 8 H 0.090 0.910 9 C -0.274 4.274 10 N -0.830 5.830 11 S 2.799 3.201 12 O -0.981 6.981 13 O -0.953 6.953 14 C -0.869 4.869 15 C -0.023 4.023 16 C -0.269 4.269 17 C -0.095 4.095 18 C -0.177 4.177 19 C 0.184 3.816 20 C -0.485 4.485 21 H 0.115 0.885 22 C -0.137 4.137 23 N -0.397 5.397 24 Si 0.716 3.284 25 H -0.187 1.187 26 H -0.196 1.196 27 H -0.167 1.167 28 C -0.002 4.002 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.140 0.860 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.262 -3.203 9.086 9.638 hybrid contribution -1.485 0.104 -0.022 1.488 sum -1.746 -3.099 9.064 9.737 Atomic orbital electron populations 1.22837 0.81472 1.02252 1.00312 1.87809 1.19351 1.27944 1.95108 1.22708 0.95999 0.84917 0.95806 0.89468 1.21933 1.01065 0.96959 0.97165 1.21974 0.97286 0.96919 1.00573 1.20815 0.96070 0.94350 0.83190 0.91047 1.23013 1.05588 0.94878 1.03933 1.57970 1.75906 1.28800 1.20341 1.01255 0.73697 0.73534 0.71653 1.93418 1.44422 1.77045 1.83226 1.93514 1.87261 1.63623 1.50870 1.29953 1.12781 1.10896 1.33264 1.20233 0.97261 0.91603 0.93181 1.20488 0.95521 0.97003 1.13920 1.20888 0.95382 0.96168 0.97100 1.21461 1.00170 0.91582 1.04463 1.16980 0.87707 0.93323 0.83588 1.20183 1.17566 0.93263 1.17453 0.88515 1.25874 0.94610 0.99633 0.93562 1.69775 1.23178 1.35819 1.10978 0.86516 0.80405 0.82281 0.79170 1.18694 1.19632 1.16671 1.21277 0.92000 0.84033 1.02896 0.94167 0.89981 0.93744 0.92048 0.91453 0.91088 0.90680 0.90320 0.91228 0.87576 0.87286 0.88762 0.88886 0.86046 0.90151 0.91141 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.82 101.05 1.09 1.48 16 2 O -0.38 -6.20 10.35 -35.23 -0.36 -6.56 16 3 C 0.06 1.06 2.46 -26.61 -0.07 1.00 16 4 H 0.09 1.58 6.21 -51.93 -0.32 1.25 16 5 C -0.13 -1.81 5.50 -26.69 -0.15 -1.96 16 6 C -0.13 -1.75 5.36 -26.61 -0.14 -1.90 16 7 C 0.16 2.46 3.48 -67.60 -0.24 2.22 16 8 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 9 C -0.22 -3.37 7.76 37.16 0.29 -3.08 16 10 N -0.99 -18.12 3.20 -106.48 -0.34 -18.46 16 11 S 2.70 59.22 4.48 -107.50 -0.48 58.74 16 12 O -0.99 -21.75 13.28 -57.18 -0.76 -22.51 16 13 O -0.96 -24.05 14.83 -57.18 -0.85 -24.90 16 14 C -0.77 -17.99 5.13 -38.87 -0.20 -18.19 16 15 C 0.00 -0.07 7.59 -39.66 -0.30 -0.37 16 16 C -0.25 -5.26 10.05 -39.29 -0.39 -5.66 16 17 C -0.08 -1.67 10.02 -39.67 -0.40 -2.06 16 18 C -0.16 -3.76 8.66 -38.87 -0.34 -4.10 16 19 C 0.19 4.65 5.53 -106.82 -0.59 4.06 16 20 C -0.46 -11.09 6.85 -37.74 -0.26 -11.35 16 21 H 0.10 2.21 1.99 -52.49 -0.10 2.11 16 22 C 0.08 2.00 5.21 -17.34 -0.09 1.91 16 23 N -0.77 -18.77 10.98 55.55 0.61 -18.16 16 24 Si 0.89 17.65 28.18 -169.99 -4.79 12.86 16 25 H -0.26 -4.78 6.88 56.52 0.39 -4.39 16 26 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 27 H -0.24 -4.84 7.11 56.52 0.40 -4.44 16 28 C 0.12 2.19 5.01 -3.71 -0.02 2.17 16 29 H 0.04 0.48 7.85 -51.93 -0.41 0.07 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.66 6.33 -51.93 -0.33 0.33 16 32 H 0.06 0.76 7.85 -51.93 -0.41 0.35 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.37 3.93 -51.93 -0.20 1.17 16 37 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 38 H 0.11 1.79 5.87 -51.93 -0.30 1.48 16 39 H 0.11 2.19 7.12 -52.49 -0.37 1.82 16 40 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 41 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.12 2.94 6.34 -52.49 -0.33 2.61 16 43 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.11 2.18 5.33 -51.93 -0.28 1.90 16 LS Contribution 346.05 15.07 5.21 5.21 Total: -1.00 -28.33 346.05 -9.57 -37.90 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -6.02 Total: 11.69 kcal Atomic # 6 Polarization: -34.03 SS G_CDS: -1.80 Total: -35.82 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.27 Total: -36.62 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: -1.97 Total: -53.96 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -4.79 Total: 12.86 kcal Atomic # 16 Polarization: 59.22 SS G_CDS: -0.48 Total: 58.74 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.33 -9.57 -37.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867637340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.346 kcal (2) G-P(sol) polarization free energy of solvation -28.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds