Wall clock time and date at job start Tue Mar 31 2020 23:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99951 * 2 1 4 4 H 1.09005 * 109.49433 * 329.99881 * 3 2 1 5 5 C 1.53039 * 109.49754 * 90.06257 * 3 2 1 6 6 C 1.53042 * 109.53639 * 181.29106 * 5 3 2 7 7 C 1.53195 * 109.33724 * 298.67860 * 6 5 3 8 8 H 1.09003 * 109.58909 * 294.83763 * 7 6 5 9 9 C 1.52997 * 109.58715 * 174.41117 * 7 6 5 10 10 N 1.46930 * 108.77086 * 54.62368 * 7 6 5 11 11 S 1.65599 * 120.62786 * 126.41748 * 10 7 6 12 12 O 1.42092 * 106.40571 * 37.41758 * 11 10 7 13 13 O 1.42095 * 106.40228 * 170.34198 * 11 10 7 14 14 C 1.76201 * 107.21471 * 283.87862 * 11 10 7 15 15 C 1.37637 * 120.12760 * 111.79547 * 14 11 10 16 16 C 1.38619 * 120.24741 * 179.97438 * 15 14 11 17 17 C 1.38649 * 120.50193 * 0.02562 * 16 15 14 18 18 C 1.37593 * 120.25121 * 0.02562 * 17 16 15 19 19 C 1.40707 * 120.12894 * 291.52309 * 14 11 10 20 20 C 1.41395 * 120.23845 * 359.97438 * 19 14 11 21 21 H 1.07992 * 120.00563 * 28.99922 * 20 19 14 22 22 C 1.39947 * 119.99180 * 208.99534 * 20 19 14 23 23 N 1.30817 * 120.00657 * 12.67821 * 22 20 19 24 24 Si 1.86806 * 119.99573 * 192.67439 * 22 20 19 25 25 H 1.48498 * 109.47406 * 90.00307 * 24 22 20 26 26 H 1.48501 * 109.47110 * 210.00401 * 24 22 20 27 27 H 1.48502 * 109.47124 * 329.99851 * 24 22 20 28 28 C 1.46921 * 118.74185 * 306.38668 * 10 7 6 29 29 H 1.08999 * 109.47696 * 299.99714 * 1 2 3 30 30 H 1.09001 * 109.46363 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46948 * 60.00579 * 1 2 3 32 32 H 1.09002 * 109.46181 * 301.33820 * 5 3 2 33 33 H 1.08994 * 109.46310 * 61.30068 * 5 3 2 34 34 H 1.09003 * 109.49586 * 178.72034 * 6 5 3 35 35 H 1.08992 * 109.50159 * 58.65018 * 6 5 3 36 36 H 1.09001 * 109.46921 * 291.27694 * 9 7 6 37 37 H 1.09002 * 109.47184 * 51.27051 * 9 7 6 38 38 H 1.08996 * 109.47116 * 171.27830 * 9 7 6 39 39 H 1.07999 * 119.87950 * 0.02562 * 15 14 11 40 40 H 1.08000 * 119.74371 * 179.97438 * 16 15 14 41 41 H 1.08002 * 119.87490 * 179.97438 * 17 16 15 42 42 H 1.08000 * 120.13339 * 179.97438 * 18 17 16 43 43 H 0.96997 * 120.00548 * 179.97438 * 23 22 20 44 44 H 1.09003 * 109.58612 * 293.82727 * 28 10 7 45 45 H 1.08992 * 109.70813 * 173.46874 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3452 1.9998 -0.5138 5 6 2.2194 1.7715 1.4426 6 6 2.8120 3.1825 1.4438 7 6 4.1724 3.1620 0.7396 8 1 4.8729 2.5570 1.3154 9 6 4.7065 4.5902 0.6139 10 7 4.0032 2.5797 -0.5987 11 16 4.5268 3.3910 -1.9441 12 8 5.7405 4.0330 -1.5786 13 8 4.4264 2.4775 -3.0279 14 6 3.3625 4.6739 -2.2654 15 6 3.7239 5.9918 -2.1013 16 6 2.8101 7.0031 -2.3539 17 6 1.5237 6.7006 -2.7733 18 6 1.1401 5.3902 -2.9430 19 6 2.0614 4.3553 -2.6961 20 6 1.6809 3.0052 -2.8742 21 1 2.1442 2.2308 -2.2810 22 6 0.7036 2.6726 -3.8191 23 7 0.3213 3.5571 -4.7039 24 14 -0.0548 0.9655 -3.8170 25 1 -1.2538 0.9575 -2.9409 26 1 -0.4502 0.5977 -5.2003 27 1 0.9366 -0.0160 -3.3081 28 6 3.3614 1.2637 -0.7207 29 1 -0.3634 0.5138 0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 -0.8900 32 1 1.2624 1.7787 1.9643 33 1 2.9035 1.0904 1.9487 34 1 2.9396 3.5226 2.4715 35 1 2.1399 3.8599 0.9172 36 1 4.0909 5.1474 -0.0923 37 1 4.6733 5.0776 1.5883 38 1 5.7357 4.5630 0.2560 39 1 4.7234 6.2390 -1.7754 40 1 3.1023 8.0345 -2.2221 41 1 0.8198 7.4965 -2.9668 42 1 0.1374 5.1567 -3.2694 43 1 -0.3557 3.3264 -5.3591 44 1 3.9957 0.5040 -0.2639 45 1 3.2070 1.0262 -1.7731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867637340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:04 Heat of formation + Delta-G solvation = -110.168050 kcal Electronic energy + Delta-G solvation = -30512.973721 eV Core-core repulsion = 26621.746810 eV Total energy + Delta-G solvation = -3891.226911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.36360 -39.35960 -38.45778 -37.78590 -36.65510 -35.68506 -33.18171 -32.86723 -32.03534 -31.35361 -28.44488 -27.41971 -26.67109 -25.04699 -23.48388 -23.02544 -22.93105 -21.47649 -19.62981 -19.52817 -18.55969 -17.81249 -17.35581 -17.16973 -16.89888 -16.43589 -16.11142 -16.01149 -15.64164 -15.22094 -15.07859 -14.92263 -14.75420 -14.52517 -14.17511 -13.94611 -13.70291 -13.50725 -13.28144 -12.99352 -12.94783 -12.89488 -12.79451 -12.76833 -12.66973 -12.50043 -12.23386 -12.16623 -11.91658 -11.82241 -11.63214 -11.57284 -11.26140 -11.17291 -11.05735 -10.48342 -9.86542 -9.69398 -9.39681 -8.82180 -6.59475 -0.22608 0.54083 0.95627 1.28180 1.39721 1.44980 2.10733 2.15234 2.60922 2.85349 2.99378 3.46061 3.68687 3.75213 3.90842 3.94421 4.14533 4.31432 4.33935 4.34956 4.40971 4.49849 4.52282 4.53341 4.70174 4.71097 4.76125 4.80019 4.82891 4.90207 5.01060 5.01819 5.10528 5.14863 5.19481 5.25152 5.29420 5.45902 5.53650 5.57783 5.70002 5.79794 5.87129 6.01303 6.11094 6.26259 6.48942 6.68625 6.84172 8.14904 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009501 B = 0.008480 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.397441 B = 3300.998010 C = 4863.863191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.396 6.396 3 C 0.066 3.934 4 H 0.063 0.937 5 C -0.126 4.126 6 C -0.123 4.123 7 C 0.153 3.847 8 H 0.100 0.900 9 C -0.217 4.217 10 N -0.989 5.989 11 S 2.710 3.290 12 O -0.995 6.995 13 O -1.002 7.002 14 C -0.787 4.787 15 C -0.010 4.010 16 C -0.249 4.249 17 C -0.075 4.075 18 C -0.184 4.184 19 C 0.166 3.834 20 C -0.481 4.481 21 H 0.105 0.895 22 C 0.047 3.953 23 N -0.807 5.807 24 Si 0.940 3.060 25 H -0.237 1.237 26 H -0.268 1.268 27 H -0.250 1.250 28 C 0.119 3.881 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.026 0.974 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.293 0.707 44 H 0.094 0.906 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 -2.975 12.410 12.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.314 6.314 3 C 0.007 3.993 4 H 0.081 0.919 5 C -0.164 4.164 6 C -0.162 4.162 7 C 0.048 3.952 8 H 0.117 0.883 9 C -0.275 4.275 10 N -0.828 5.828 11 S 2.809 3.191 12 O -0.985 6.985 13 O -0.992 6.992 14 C -0.881 4.881 15 C -0.030 4.030 16 C -0.269 4.269 17 C -0.094 4.094 18 C -0.204 4.204 19 C 0.161 3.839 20 C -0.509 4.509 21 H 0.122 0.878 22 C -0.171 4.171 23 N -0.431 5.431 24 Si 0.759 3.241 25 H -0.161 1.161 26 H -0.192 1.192 27 H -0.173 1.173 28 C -0.007 4.007 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.125 0.875 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.383 -3.349 11.724 12.199 hybrid contribution -1.372 0.235 -0.787 1.599 sum -1.755 -3.114 10.937 11.506 Atomic orbital electron populations 1.23038 0.80194 1.03915 1.00410 1.87777 1.20760 1.27637 1.95258 1.22615 0.94539 0.84736 0.97390 0.91929 1.21895 1.02386 0.96991 0.95109 1.21960 0.95624 0.96649 1.01971 1.21199 0.97843 0.94419 0.81726 0.88255 1.22993 1.04040 0.95230 1.05262 1.57689 1.75834 1.28686 1.20555 1.00741 0.73516 0.73011 0.71815 1.93416 1.44614 1.77154 1.83358 1.93458 1.87746 1.64608 1.53400 1.30196 1.12562 1.12126 1.33196 1.20519 0.98193 0.91359 0.92883 1.20878 0.94973 0.98487 1.12568 1.21222 0.96335 0.96024 0.95819 1.21496 0.99893 0.92717 1.06318 1.17271 0.88480 0.93898 0.84234 1.20485 1.18522 0.93655 1.18231 0.87763 1.26606 0.94726 1.02755 0.93045 1.69820 1.24089 1.37459 1.11777 0.85844 0.80372 0.78182 0.79655 1.16091 1.19234 1.17337 1.21352 0.93592 0.84113 1.01637 0.92232 0.87584 0.95493 0.90474 0.89739 0.87510 0.92896 0.92464 0.87774 0.89016 0.85792 0.85537 0.86185 0.87230 0.89577 0.88798 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.82 113.37 1.23 1.75 16 2 O -0.40 -12.17 10.35 -148.98 -1.54 -13.72 16 3 C 0.07 2.11 2.46 30.67 0.08 2.19 16 4 H 0.06 2.30 6.21 -2.38 -0.01 2.28 16 5 C -0.13 -3.05 5.50 30.62 0.17 -2.88 16 6 C -0.12 -3.00 5.36 30.67 0.16 -2.84 16 7 C 0.15 4.28 3.48 44.97 0.16 4.44 16 8 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 9 C -0.22 -6.33 7.76 71.98 0.56 -5.77 16 10 N -0.99 -35.53 3.20 -490.78 -1.57 -37.10 16 11 S 2.71 120.81 4.48 -56.49 -0.25 120.56 16 12 O -0.99 -43.67 13.28 -128.00 -1.70 -45.37 16 13 O -1.00 -52.03 14.83 -128.00 -1.90 -53.93 16 14 C -0.79 -37.22 5.13 22.73 0.12 -37.10 16 15 C -0.01 -0.43 7.59 22.22 0.17 -0.26 16 16 C -0.25 -10.20 10.05 22.46 0.23 -9.97 16 17 C -0.08 -3.25 10.02 22.22 0.22 -3.03 16 18 C -0.18 -9.07 8.66 22.73 0.20 -8.88 16 19 C 0.17 8.43 5.53 -21.29 -0.12 8.31 16 20 C -0.48 -24.29 6.85 23.46 0.16 -24.13 16 21 H 0.10 4.97 1.99 -2.91 -0.01 4.97 16 22 C 0.05 2.29 5.21 85.26 0.44 2.73 16 23 N -0.81 -40.64 10.98 21.83 0.24 -40.40 16 24 Si 0.94 36.88 28.18 68.60 1.93 38.81 16 25 H -0.24 -8.26 6.88 99.48 0.68 -7.57 16 26 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 27 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 28 C 0.12 4.16 5.01 86.36 0.43 4.60 16 29 H 0.06 1.27 7.85 -2.39 -0.02 1.25 16 30 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.03 0.77 6.33 -2.39 -0.02 0.76 16 32 H 0.08 1.64 7.85 -2.39 -0.02 1.63 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.93 3.93 -2.39 -0.01 1.92 16 37 H 0.10 2.25 8.13 -2.39 -0.02 2.23 16 38 H 0.09 2.94 5.87 -2.39 -0.01 2.93 16 39 H 0.12 4.89 7.12 -2.91 -0.02 4.87 16 40 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 41 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 42 H 0.11 5.55 6.34 -2.91 -0.02 5.53 16 43 H 0.29 13.33 8.30 -92.71 -0.77 12.56 16 44 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 45 H 0.08 3.24 5.33 -2.39 -0.01 3.23 16 Total: -1.00 -63.55 346.05 0.41 -63.14 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: 1.00 Total: 38.85 kcal Atomic # 6 Polarization: -75.04 SS G_CDS: 4.20 Total: -70.84 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -1.33 Total: -77.50 kcal Atomic # 8 Polarization: -107.88 SS G_CDS: -5.14 Total: -113.02 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 1.93 Total: 38.81 kcal Atomic # 16 Polarization: 120.81 SS G_CDS: -0.25 Total: 120.56 kcal Total: -63.55 0.41 -63.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867637340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.026 kcal (2) G-P(sol) polarization free energy of solvation -63.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds