Wall clock time and date at job start Tue Mar 31 2020 23:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99842 * 2 1 4 4 H 1.09007 * 109.52713 * 30.08100 * 3 2 1 5 5 C 1.53041 * 109.49681 * 269.99915 * 3 2 1 6 6 C 1.53045 * 109.53823 * 178.68480 * 5 3 2 7 7 C 1.53190 * 109.31371 * 61.36303 * 6 5 3 8 8 H 1.09004 * 109.69752 * 65.22221 * 7 6 5 9 9 C 1.52999 * 109.58818 * 185.57512 * 7 6 5 10 10 N 1.46920 * 108.77825 * 305.37018 * 7 6 5 11 11 S 1.65607 * 120.63130 * 233.58411 * 10 7 6 12 12 O 1.42090 * 106.40349 * 169.70980 * 11 10 7 13 13 O 1.42099 * 106.39727 * 36.79049 * 11 10 7 14 14 C 1.76197 * 107.21590 * 283.25115 * 11 10 7 15 15 C 1.37637 * 120.12764 * 116.37529 * 14 11 10 16 16 C 1.38619 * 120.25159 * 180.23347 * 15 14 11 17 17 C 1.38657 * 120.49415 * 359.48513 * 16 15 14 18 18 C 1.37596 * 120.25261 * 0.51387 * 17 16 15 19 19 C 1.40697 * 120.12782 * 296.35626 * 14 11 10 20 20 C 1.41394 * 120.24616 * 0.03940 * 19 14 11 21 21 H 1.07996 * 120.00169 * 327.77461 * 20 19 14 22 22 C 1.39947 * 120.00189 * 147.77071 * 20 19 14 23 23 N 1.30820 * 120.00168 * 166.05058 * 22 20 19 24 24 Si 1.86805 * 119.99624 * 346.04950 * 22 20 19 25 25 H 1.48496 * 109.46995 * 88.63245 * 24 22 20 26 26 H 1.48501 * 109.46846 * 208.62925 * 24 22 20 27 27 H 1.48501 * 109.47138 * 328.63196 * 24 22 20 28 28 C 1.46931 * 118.73988 * 53.85585 * 10 7 6 29 29 H 1.09000 * 109.46837 * 300.00205 * 1 2 3 30 30 H 1.08993 * 109.47438 * 59.99923 * 1 2 3 31 31 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.45767 * 58.66966 * 5 3 2 33 33 H 1.08997 * 109.46240 * 298.70537 * 5 3 2 34 34 H 1.09004 * 109.49928 * 301.41616 * 6 5 3 35 35 H 1.08997 * 109.52368 * 181.33663 * 6 5 3 36 36 H 1.09004 * 109.46969 * 171.46891 * 9 7 6 37 37 H 1.08999 * 109.47114 * 291.46784 * 9 7 6 38 38 H 1.09002 * 109.46880 * 51.47461 * 9 7 6 39 39 H 1.08000 * 119.87659 * 359.95486 * 15 14 11 40 40 H 1.07992 * 119.75238 * 179.74964 * 16 15 14 41 41 H 1.08002 * 119.87143 * 180.25824 * 17 16 15 42 42 H 1.08005 * 120.12906 * 179.76167 * 18 17 16 43 43 H 0.96998 * 119.99469 * 179.97438 * 23 22 20 44 44 H 1.08991 * 109.58711 * 65.93106 * 28 10 7 45 45 H 1.09000 * 109.58565 * 186.35792 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3463 1.9999 0.5149 5 6 2.2180 1.7721 -1.4427 6 6 2.8100 3.1833 -1.4439 7 6 4.1714 3.1623 -0.7417 8 1 4.8728 2.5591 -1.3182 9 6 4.7058 4.5904 -0.6159 10 7 4.0044 2.5791 0.5964 11 16 4.5299 3.3895 1.9416 12 8 4.0107 2.6865 3.0620 13 8 4.2779 4.7676 1.7038 14 6 6.2813 3.2083 2.0085 15 6 7.0948 4.3131 1.8987 16 6 8.4731 4.1730 1.9462 17 6 9.0478 2.9224 2.1151 18 6 8.2540 1.8041 2.2270 19 6 6.8536 1.9338 2.1747 20 6 6.0279 0.7916 2.2882 21 1 5.0575 0.8711 2.7554 22 6 6.4681 -0.4419 1.7950 23 7 5.8448 -1.5414 2.1325 24 14 7.9457 -0.5182 0.6546 25 1 9.1866 -0.6454 1.4602 26 1 7.8167 -1.6929 -0.2446 27 1 8.0082 0.7231 -0.1583 28 6 3.3676 1.2605 0.7180 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.2604 1.7796 -1.9633 33 1 2.9015 1.0911 -1.9497 34 1 2.1386 3.8601 -0.9153 35 1 2.9358 3.5247 -2.4714 36 1 5.5956 4.5912 0.0137 37 1 4.9601 4.9716 -1.6049 38 1 3.9424 5.2257 -0.1668 39 1 6.6578 5.2924 1.7706 40 1 9.1039 5.0448 1.8552 41 1 10.1227 2.8254 2.1548 42 1 8.7039 0.8305 2.3546 43 1 6.1498 -2.3963 1.7903 44 1 4.0029 0.5041 0.2574 45 1 3.2178 1.0229 1.7711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867637342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:13 Heat of formation + Delta-G solvation = -93.614073 kcal Electronic energy + Delta-G solvation = -29999.294307 eV Core-core repulsion = 26108.785230 eV Total energy + Delta-G solvation = -3890.509077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.03600 -37.89147 -37.02574 -36.35470 -34.94487 -33.85634 -31.85492 -31.57850 -30.70682 -30.13002 -27.29701 -25.58078 -25.40010 -23.76761 -22.09501 -21.71266 -21.19715 -20.32148 -18.11127 -17.73598 -16.98454 -16.55915 -16.02262 -15.73079 -15.36859 -15.11597 -14.86107 -14.35129 -14.21422 -13.91341 -13.72490 -13.63985 -13.27326 -13.01045 -12.87077 -12.66541 -12.31760 -12.27066 -11.98785 -11.83590 -11.58511 -11.35388 -11.23275 -11.18742 -11.00032 -10.92351 -10.75602 -10.69255 -10.68367 -10.47961 -10.33895 -10.00070 -9.93993 -9.48543 -9.34289 -9.24005 -8.43354 -8.19743 -7.83652 -7.17422 -4.87457 1.39470 2.06705 2.50697 2.94472 3.04071 3.13570 3.61535 3.77105 4.03829 4.24872 4.65664 4.91957 4.97243 5.04308 5.10362 5.19765 5.38450 5.42860 5.46388 5.51685 5.53492 5.63620 5.73273 5.79998 5.89013 5.90360 5.95145 5.98688 6.11741 6.16799 6.21707 6.29657 6.39320 6.46627 6.57478 6.63153 6.64743 6.84390 6.94514 7.07800 7.12553 7.28424 7.41585 7.45694 7.55413 7.82861 8.16084 8.31003 8.53187 9.80373 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011282 B = 0.006705 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.232146 B = 4175.134828 C = 5467.067163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.076 3.924 4 H 0.061 0.939 5 C -0.137 4.137 6 C -0.122 4.122 7 C 0.155 3.845 8 H 0.073 0.927 9 C -0.187 4.187 10 N -0.986 5.986 11 S 2.707 3.293 12 O -0.971 6.971 13 O -0.990 6.990 14 C -0.769 4.769 15 C 0.016 3.984 16 C -0.258 4.258 17 C -0.045 4.045 18 C -0.237 4.237 19 C 0.165 3.835 20 C -0.456 4.456 21 H 0.128 0.872 22 C 0.091 3.909 23 N -0.774 5.774 24 Si 0.907 3.093 25 H -0.266 1.266 26 H -0.286 1.286 27 H -0.243 1.243 28 C 0.135 3.865 29 H 0.040 0.960 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.292 0.708 44 H 0.082 0.918 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.974 3.799 -8.198 10.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C 0.016 3.984 4 H 0.079 0.921 5 C -0.175 4.175 6 C -0.161 4.161 7 C 0.049 3.951 8 H 0.091 0.909 9 C -0.245 4.245 10 N -0.823 5.823 11 S 2.806 3.194 12 O -0.961 6.961 13 O -0.981 6.981 14 C -0.864 4.864 15 C -0.004 4.004 16 C -0.279 4.279 17 C -0.063 4.063 18 C -0.257 4.257 19 C 0.160 3.840 20 C -0.483 4.483 21 H 0.145 0.855 22 C -0.133 4.133 23 N -0.395 5.395 24 Si 0.733 3.267 25 H -0.192 1.192 26 H -0.213 1.213 27 H -0.167 1.167 28 C 0.009 3.991 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.132 0.868 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.127 0.873 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.547 3.764 -7.583 10.121 hybrid contribution 1.336 -0.382 -0.717 1.563 sum -4.211 3.382 -8.301 9.903 Atomic orbital electron populations 1.22757 0.81651 1.02422 0.99641 1.87931 1.19096 1.27562 1.94989 1.22639 0.95820 0.84242 0.95710 0.92140 1.21985 1.01142 0.97163 0.97247 1.21919 0.96944 0.96576 1.00710 1.20900 0.96292 0.94358 0.83568 0.90913 1.22735 1.03795 0.95401 1.02577 1.57600 1.73981 1.30435 1.20247 1.01011 0.74544 0.72016 0.71847 1.93482 1.79740 1.74007 1.48878 1.93495 1.85937 1.33297 1.85326 1.29925 1.22823 1.00459 1.33147 1.20382 0.93659 0.95936 0.90439 1.20503 0.94361 0.96400 1.16613 1.20842 0.97791 0.93282 0.94406 1.21341 0.94474 0.97647 1.12221 1.17085 0.91801 0.90768 0.84315 1.20334 1.05882 0.90727 1.31376 0.85505 1.26178 0.97218 0.94589 0.95296 1.69654 1.36979 0.99488 1.33341 0.86428 0.80705 0.79183 0.80394 1.19175 1.21339 1.16663 1.21369 0.90825 0.84050 1.02854 0.94089 0.94488 0.89834 0.92154 0.90885 0.91367 0.90816 0.91231 0.91829 0.88520 0.86821 0.88141 0.88332 0.87334 0.89740 0.90019 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.82 101.05 1.09 1.47 16 2 O -0.38 -6.07 10.35 -35.23 -0.36 -6.43 16 3 C 0.08 1.19 2.77 -26.39 -0.07 1.12 16 4 H 0.06 0.91 7.79 -51.93 -0.40 0.50 16 5 C -0.14 -1.82 5.50 -26.69 -0.15 -1.97 16 6 C -0.12 -1.56 5.37 -26.61 -0.14 -1.71 16 7 C 0.16 2.43 3.51 -67.60 -0.24 2.19 16 8 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 9 C -0.19 -2.89 7.60 37.16 0.28 -2.61 16 10 N -0.99 -18.44 3.17 -106.23 -0.34 -18.77 16 11 S 2.71 58.30 4.49 -107.50 -0.48 57.82 16 12 O -0.97 -23.81 14.23 -57.18 -0.81 -24.62 16 13 O -0.99 -20.80 12.59 -57.18 -0.72 -21.52 16 14 C -0.77 -17.57 5.45 -38.87 -0.21 -17.78 16 15 C 0.02 0.33 8.20 -39.66 -0.33 0.00 16 16 C -0.26 -5.19 10.05 -39.29 -0.39 -5.58 16 17 C -0.04 -0.92 10.02 -39.66 -0.40 -1.32 16 18 C -0.24 -5.47 7.20 -38.87 -0.28 -5.75 16 19 C 0.17 4.03 5.08 -106.82 -0.54 3.49 16 20 C -0.46 -11.51 7.50 -37.74 -0.28 -11.79 16 21 H 0.13 3.42 4.60 -52.49 -0.24 3.18 16 22 C 0.09 2.19 5.45 -17.34 -0.09 2.10 16 23 N -0.77 -18.90 13.93 55.55 0.77 -18.13 16 24 Si 0.91 19.29 24.51 -169.99 -4.17 15.12 16 25 H -0.27 -5.51 6.45 56.52 0.36 -5.15 16 26 H -0.29 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.24 -5.28 6.99 56.52 0.40 -4.89 16 28 C 0.13 2.55 4.68 -3.48 -0.02 2.54 16 29 H 0.04 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.04 0.37 7.85 -51.93 -0.41 -0.04 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.69 7.85 -51.93 -0.41 0.28 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.20 4.29 -51.93 -0.22 0.98 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 1.56 6.39 -51.93 -0.33 1.23 16 39 H 0.11 2.16 7.03 -52.49 -0.37 1.79 16 40 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.11 2.45 4.56 -52.48 -0.24 2.21 16 43 H 0.29 6.44 8.30 -40.82 -0.34 6.10 16 44 H 0.08 1.63 8.12 -51.93 -0.42 1.21 16 45 H 0.11 2.26 5.88 -51.93 -0.31 1.95 16 LS Contribution 348.73 15.07 5.26 5.26 Total: -1.00 -28.51 348.73 -8.96 -37.47 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.33 Total: 9.41 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: -1.77 Total: -35.60 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.44 Total: -36.90 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -1.90 Total: -52.57 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.17 Total: 15.12 kcal Atomic # 16 Polarization: 58.30 SS G_CDS: -0.48 Total: 57.82 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.51 -8.96 -37.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867637342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.144 kcal (2) G-P(sol) polarization free energy of solvation -28.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds