Wall clock time and date at job start Tue Mar 31 2020 23:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99842 * 2 1 4 4 H 1.09007 * 109.52713 * 30.08100 * 3 2 1 5 5 C 1.53041 * 109.49681 * 269.99915 * 3 2 1 6 6 C 1.53045 * 109.53823 * 178.68480 * 5 3 2 7 7 C 1.53190 * 109.31371 * 61.36303 * 6 5 3 8 8 H 1.09004 * 109.69752 * 65.22221 * 7 6 5 9 9 C 1.52999 * 109.58818 * 185.57512 * 7 6 5 10 10 N 1.46920 * 108.77825 * 305.37018 * 7 6 5 11 11 S 1.65607 * 120.63130 * 233.58411 * 10 7 6 12 12 O 1.42090 * 106.40349 * 169.70980 * 11 10 7 13 13 O 1.42099 * 106.39727 * 36.79049 * 11 10 7 14 14 C 1.76197 * 107.21590 * 283.25115 * 11 10 7 15 15 C 1.37637 * 120.12764 * 116.37529 * 14 11 10 16 16 C 1.38619 * 120.25159 * 180.23347 * 15 14 11 17 17 C 1.38657 * 120.49415 * 359.48513 * 16 15 14 18 18 C 1.37596 * 120.25261 * 0.51387 * 17 16 15 19 19 C 1.40697 * 120.12782 * 296.35626 * 14 11 10 20 20 C 1.41394 * 120.24616 * 0.03940 * 19 14 11 21 21 H 1.07996 * 120.00169 * 327.77461 * 20 19 14 22 22 C 1.39947 * 120.00189 * 147.77071 * 20 19 14 23 23 N 1.30820 * 120.00168 * 166.05058 * 22 20 19 24 24 Si 1.86805 * 119.99624 * 346.04950 * 22 20 19 25 25 H 1.48496 * 109.46995 * 88.63245 * 24 22 20 26 26 H 1.48501 * 109.46846 * 208.62925 * 24 22 20 27 27 H 1.48501 * 109.47138 * 328.63196 * 24 22 20 28 28 C 1.46931 * 118.73988 * 53.85585 * 10 7 6 29 29 H 1.09000 * 109.46837 * 300.00205 * 1 2 3 30 30 H 1.08993 * 109.47438 * 59.99923 * 1 2 3 31 31 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.45767 * 58.66966 * 5 3 2 33 33 H 1.08997 * 109.46240 * 298.70537 * 5 3 2 34 34 H 1.09004 * 109.49928 * 301.41616 * 6 5 3 35 35 H 1.08997 * 109.52368 * 181.33663 * 6 5 3 36 36 H 1.09004 * 109.46969 * 171.46891 * 9 7 6 37 37 H 1.08999 * 109.47114 * 291.46784 * 9 7 6 38 38 H 1.09002 * 109.46880 * 51.47461 * 9 7 6 39 39 H 1.08000 * 119.87659 * 359.95486 * 15 14 11 40 40 H 1.07992 * 119.75238 * 179.74964 * 16 15 14 41 41 H 1.08002 * 119.87143 * 180.25824 * 17 16 15 42 42 H 1.08005 * 120.12906 * 179.76167 * 18 17 16 43 43 H 0.96998 * 119.99469 * 179.97438 * 23 22 20 44 44 H 1.08991 * 109.58711 * 65.93106 * 28 10 7 45 45 H 1.09000 * 109.58565 * 186.35792 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3463 1.9999 0.5149 5 6 2.2180 1.7721 -1.4427 6 6 2.8100 3.1833 -1.4439 7 6 4.1714 3.1623 -0.7417 8 1 4.8728 2.5591 -1.3182 9 6 4.7058 4.5904 -0.6159 10 7 4.0044 2.5791 0.5964 11 16 4.5299 3.3895 1.9416 12 8 4.0107 2.6865 3.0620 13 8 4.2779 4.7676 1.7038 14 6 6.2813 3.2083 2.0085 15 6 7.0948 4.3131 1.8987 16 6 8.4731 4.1730 1.9462 17 6 9.0478 2.9224 2.1151 18 6 8.2540 1.8041 2.2270 19 6 6.8536 1.9338 2.1747 20 6 6.0279 0.7916 2.2882 21 1 5.0575 0.8711 2.7554 22 6 6.4681 -0.4419 1.7950 23 7 5.8448 -1.5414 2.1325 24 14 7.9457 -0.5182 0.6546 25 1 9.1866 -0.6454 1.4602 26 1 7.8167 -1.6929 -0.2446 27 1 8.0082 0.7231 -0.1583 28 6 3.3676 1.2605 0.7180 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.2604 1.7796 -1.9633 33 1 2.9015 1.0911 -1.9497 34 1 2.1386 3.8601 -0.9153 35 1 2.9358 3.5247 -2.4714 36 1 5.5956 4.5912 0.0137 37 1 4.9601 4.9716 -1.6049 38 1 3.9424 5.2257 -0.1668 39 1 6.6578 5.2924 1.7706 40 1 9.1039 5.0448 1.8552 41 1 10.1227 2.8254 2.1548 42 1 8.7039 0.8305 2.3546 43 1 6.1498 -2.3963 1.7903 44 1 4.0029 0.5041 0.2574 45 1 3.2178 1.0229 1.7711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867637342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:12 Heat of formation + Delta-G solvation = -112.635147 kcal Electronic energy + Delta-G solvation = -30000.119123 eV Core-core repulsion = 26108.785230 eV Total energy + Delta-G solvation = -3891.333892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.28309 -39.60141 -38.52676 -37.81402 -36.72081 -35.63429 -33.13760 -32.86364 -32.44208 -31.80929 -28.42116 -27.21119 -26.69045 -25.04656 -23.76595 -23.02803 -22.91843 -21.57147 -19.74680 -19.51373 -18.50704 -18.10147 -17.43606 -17.09588 -17.04806 -16.47684 -16.07167 -15.90669 -15.71984 -15.47987 -15.30966 -14.91554 -14.79336 -14.60192 -14.16546 -14.02886 -13.86861 -13.67812 -13.53808 -13.19235 -13.00771 -12.98423 -12.83505 -12.75385 -12.67094 -12.36624 -12.16924 -12.06394 -11.96999 -11.87059 -11.74540 -11.63861 -11.30682 -11.20836 -10.97844 -10.51721 -10.00599 -9.73793 -9.58231 -8.96998 -6.72459 -0.26265 0.34431 0.77471 1.21986 1.34285 1.43204 2.03415 2.11125 2.50529 2.79732 2.99353 3.31797 3.67836 3.69529 3.85525 3.88532 4.06530 4.19964 4.22983 4.30850 4.31294 4.42084 4.52814 4.55713 4.61187 4.69897 4.70859 4.78492 4.84397 4.89873 4.91231 4.99073 5.02445 5.07462 5.12905 5.21804 5.28104 5.37299 5.38161 5.52326 5.60841 5.69857 5.82391 5.84095 6.08565 6.29218 6.30492 6.53359 6.69878 8.06849 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011282 B = 0.006705 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.232146 B = 4175.134828 C = 5467.067163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.079 3.921 4 H 0.065 0.935 5 C -0.131 4.131 6 C -0.115 4.115 7 C 0.143 3.857 8 H 0.075 0.925 9 C -0.187 4.187 10 N -0.981 5.981 11 S 2.714 3.286 12 O -1.011 7.011 13 O -0.986 6.986 14 C -0.782 4.782 15 C 0.005 3.995 16 C -0.247 4.247 17 C -0.041 4.041 18 C -0.263 4.263 19 C 0.149 3.851 20 C -0.484 4.484 21 H 0.094 0.906 22 C 0.063 3.937 23 N -0.812 5.812 24 Si 0.953 3.047 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.250 1.250 28 C 0.140 3.860 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.109 0.891 43 H 0.299 0.701 44 H 0.061 0.939 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.066 5.761 -10.811 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.019 3.981 4 H 0.084 0.916 5 C -0.168 4.168 6 C -0.154 4.154 7 C 0.038 3.962 8 H 0.093 0.907 9 C -0.245 4.245 10 N -0.820 5.820 11 S 2.813 3.187 12 O -1.001 7.001 13 O -0.977 6.977 14 C -0.875 4.875 15 C -0.015 4.015 16 C -0.267 4.267 17 C -0.059 4.059 18 C -0.283 4.283 19 C 0.144 3.856 20 C -0.512 4.512 21 H 0.112 0.888 22 C -0.157 4.157 23 N -0.436 5.436 24 Si 0.776 3.224 25 H -0.180 1.180 26 H -0.201 1.201 27 H -0.173 1.173 28 C 0.014 3.986 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.128 0.872 36 H 0.067 0.933 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.151 0.849 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.126 0.874 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.637 5.736 -10.186 12.576 hybrid contribution 1.060 -0.823 0.128 1.349 sum -3.576 4.913 -10.058 11.751 Atomic orbital electron populations 1.23002 0.79397 1.03858 1.00881 1.87888 1.21613 1.27807 1.95245 1.22569 0.93708 0.84517 0.97305 0.91647 1.21949 1.02575 0.97185 0.95133 1.21926 0.94829 0.96374 1.02314 1.21277 0.98556 0.94389 0.81980 0.90725 1.22725 1.02568 0.94977 1.04227 1.57404 1.73566 1.30110 1.20918 1.00649 0.74228 0.71982 0.71845 1.93432 1.80377 1.74884 1.51449 1.93498 1.85819 1.32981 1.85408 1.30215 1.23826 1.00686 1.32819 1.20743 0.94398 0.96172 0.90158 1.21029 0.94323 0.97607 1.13714 1.21305 0.99690 0.92567 0.92366 1.21483 0.94109 0.98849 1.13811 1.17288 0.92738 0.90994 0.84551 1.20175 1.05246 0.92170 1.33597 0.88778 1.26729 0.99092 0.93933 0.95934 1.69680 1.38668 1.00119 1.35084 0.85729 0.78557 0.79105 0.79034 1.18020 1.20053 1.17306 1.21168 0.92752 0.83683 1.01003 0.93907 0.92106 0.88432 0.89308 0.91351 0.90970 0.87197 0.93263 0.88238 0.89242 0.84878 0.84194 0.84492 0.87381 0.88969 0.92088 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.82 113.37 1.23 1.78 16 2 O -0.41 -13.22 10.35 -148.98 -1.54 -14.76 16 3 C 0.08 2.49 2.77 30.82 0.09 2.57 16 4 H 0.07 1.97 7.79 -2.38 -0.02 1.95 16 5 C -0.13 -3.19 5.50 30.62 0.17 -3.02 16 6 C -0.12 -2.62 5.37 30.67 0.16 -2.45 16 7 C 0.14 4.29 3.51 44.97 0.16 4.45 16 8 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 9 C -0.19 -5.37 7.60 71.98 0.55 -4.82 16 10 N -0.98 -37.65 3.17 -490.01 -1.55 -39.20 16 11 S 2.71 120.62 4.49 -56.49 -0.25 120.37 16 12 O -1.01 -53.03 14.23 -128.00 -1.82 -54.86 16 13 O -0.99 -41.37 12.59 -128.00 -1.61 -42.98 16 14 C -0.78 -36.04 5.45 22.73 0.12 -35.91 16 15 C 0.00 0.20 8.20 22.22 0.18 0.38 16 16 C -0.25 -9.03 10.05 22.46 0.23 -8.81 16 17 C -0.04 -1.57 10.02 22.22 0.22 -1.35 16 18 C -0.26 -11.95 7.20 22.73 0.16 -11.79 16 19 C 0.15 7.43 5.08 -21.29 -0.11 7.32 16 20 C -0.48 -25.89 7.50 23.46 0.18 -25.71 16 21 H 0.09 5.56 4.60 -2.91 -0.01 5.55 16 22 C 0.06 3.18 5.45 85.26 0.46 3.64 16 23 N -0.81 -42.00 13.93 21.83 0.30 -41.70 16 24 Si 0.95 40.01 24.51 68.60 1.68 41.69 16 25 H -0.25 -10.14 6.45 99.48 0.64 -9.50 16 26 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 27 H -0.25 -10.59 6.99 99.48 0.70 -9.89 16 28 C 0.14 5.65 4.68 86.51 0.41 6.06 16 29 H 0.04 0.94 8.09 -2.39 -0.02 0.92 16 30 H 0.06 1.08 7.85 -2.39 -0.02 1.06 16 31 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.09 1.70 7.85 -2.39 -0.02 1.68 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.05 1.61 4.29 -2.39 -0.01 1.60 16 37 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.09 2.70 6.39 -2.39 -0.02 2.69 16 39 H 0.13 4.77 7.03 -2.91 -0.02 4.75 16 40 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 41 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 42 H 0.11 4.83 4.56 -2.91 -0.01 4.82 16 43 H 0.30 13.85 8.30 -92.71 -0.77 13.08 16 44 H 0.06 2.65 8.12 -2.39 -0.02 2.63 16 45 H 0.07 3.28 5.88 -2.39 -0.01 3.27 16 Total: -1.00 -65.56 348.73 0.34 -65.22 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: 0.93 Total: 33.88 kcal Atomic # 6 Polarization: -71.87 SS G_CDS: 4.21 Total: -67.66 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -1.25 Total: -80.90 kcal Atomic # 8 Polarization: -107.63 SS G_CDS: -4.98 Total: -112.60 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 1.68 Total: 41.69 kcal Atomic # 16 Polarization: 120.62 SS G_CDS: -0.25 Total: 120.37 kcal Total: -65.56 0.34 -65.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867637342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.418 kcal (2) G-P(sol) polarization free energy of solvation -65.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds