Wall clock time and date at job start Tue Mar 31 2020 23:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46822 * 2 1 4 4 C 1.50701 * 109.47799 * 120.00156 * 2 1 3 5 5 C 1.38224 * 120.01055 * 59.99645 * 4 2 1 6 6 C 1.38219 * 120.02221 * 179.97438 * 5 4 2 7 7 C 1.38265 * 120.05383 * 0.02807 * 6 5 4 8 8 C 1.38170 * 120.02442 * 359.97438 * 7 6 5 9 9 C 1.38432 * 120.01322 * 239.72360 * 4 2 1 10 10 F 1.35099 * 120.02854 * 0.02562 * 9 4 2 11 11 C 1.53001 * 109.46901 * 240.00268 * 2 1 3 12 12 H 1.08999 * 109.47164 * 299.99522 * 11 2 1 13 13 O 1.42903 * 109.47171 * 179.97438 * 11 2 1 14 14 C 1.50707 * 109.47316 * 59.99941 * 11 2 1 15 15 O 1.20823 * 119.99815 * 114.99650 * 14 11 2 16 16 O 1.34232 * 119.99215 * 294.99910 * 14 11 2 17 17 C 1.45200 * 116.99096 * 179.97438 * 16 14 11 18 18 C 1.50700 * 109.46794 * 179.97438 * 17 16 14 19 19 O 1.21282 * 119.99940 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00458 * 179.97438 * 18 17 16 21 21 C 1.46496 * 120.00440 * 180.02562 * 20 18 17 22 22 C 1.50706 * 109.47272 * 180.02562 * 21 20 18 23 23 H 1.07994 * 119.99710 * 0.02562 * 22 21 20 24 24 C 1.37875 * 119.99889 * 179.97438 * 22 21 20 25 25 N 1.31516 * 120.00274 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99754 * 180.02562 * 24 22 21 27 27 H 1.48489 * 109.47219 * 60.00252 * 26 24 22 28 28 H 1.48503 * 109.47094 * 180.02562 * 26 24 22 29 29 H 1.48508 * 109.47258 * 300.00073 * 26 24 22 30 30 H 1.09005 * 109.46908 * 299.99495 * 1 2 3 31 31 H 1.08997 * 109.47655 * 60.00037 * 1 2 3 32 32 H 1.09009 * 109.46870 * 179.97438 * 1 2 3 33 33 H 1.08001 * 119.98467 * 359.96404 * 5 4 2 34 34 H 1.08004 * 119.97321 * 180.02562 * 6 5 4 35 35 H 1.08003 * 119.98749 * 179.97438 * 7 6 5 36 36 H 1.08009 * 120.01360 * 179.97438 * 8 7 6 37 37 H 0.96700 * 114.00311 * 300.00378 * 13 11 2 38 38 H 1.08995 * 109.47524 * 299.99566 * 17 16 14 39 39 H 1.09002 * 109.47518 * 60.00257 * 17 16 14 40 40 H 0.97001 * 119.99558 * 0.02562 * 20 18 17 41 41 H 1.09003 * 109.47457 * 300.00404 * 21 20 18 42 42 H 1.09002 * 109.46760 * 60.00153 * 21 20 18 43 43 H 0.96997 * 120.00087 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 6 1.6987 -2.0338 1.4494 6 6 2.1599 -2.6857 2.5775 7 6 2.9550 -2.0151 3.4885 8 6 3.2898 -0.6922 3.2716 9 6 2.8331 -0.0396 2.1388 10 9 3.1641 1.2524 1.9233 11 6 2.0399 -0.7212 -1.2493 12 1 1.6766 -1.7489 -1.2493 13 8 3.4690 -0.7207 -1.2497 14 6 1.5376 -0.0107 -2.4798 15 8 2.3190 0.5268 -3.2283 16 8 0.2220 0.0248 -2.7440 17 6 -0.1900 0.7272 -3.9461 18 6 -1.6899 0.6618 -4.0770 19 8 -2.3469 0.0808 -3.2393 20 7 -2.3014 1.2497 -5.1243 21 6 -3.7595 1.1866 -5.2512 22 6 -4.1872 1.9155 -6.4990 23 1 -3.4469 2.3790 -7.1341 24 6 -5.5235 1.9897 -6.8301 25 7 -6.4250 1.4248 -6.0569 26 14 -6.0536 2.8926 -8.3771 27 1 -5.4253 2.2554 -9.5620 28 1 -7.5317 2.8287 -8.5057 29 1 -5.6254 4.3121 -8.2931 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 1.0772 -2.5584 0.7388 34 1 1.8990 -3.7199 2.7476 35 1 3.3144 -2.5254 4.3698 36 1 3.9106 -0.1683 3.9836 37 1 3.8620 0.1628 -1.2498 38 1 0.1245 1.7690 -3.8841 39 1 0.2709 0.2597 -4.8162 40 1 -1.7759 1.7147 -5.7941 41 1 -4.0741 0.1448 -5.3135 42 1 -4.2204 1.6539 -4.3809 43 1 -7.3652 1.4773 -6.2897 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870073213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:58 Heat of formation + Delta-G solvation = -198.322409 kcal Electronic energy + Delta-G solvation = -28782.411028 eV Core-core repulsion = 24321.148281 eV Total energy + Delta-G solvation = -4461.262747 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.22170 -41.10514 -39.65300 -38.83842 -37.52492 -36.41191 -34.48123 -34.28874 -32.45031 -30.90985 -30.37557 -29.22999 -27.47219 -26.44750 -24.44689 -23.08765 -22.64830 -21.61081 -20.77588 -20.00406 -18.68564 -17.91855 -17.81597 -17.18749 -16.94325 -16.75684 -16.07979 -15.93837 -15.70897 -15.53176 -15.10578 -15.05973 -14.54009 -14.47348 -14.34771 -13.96826 -13.50282 -13.44926 -13.17453 -12.88254 -12.80724 -12.51805 -12.37785 -12.21854 -12.14581 -12.02408 -11.81761 -11.47184 -11.24301 -11.06372 -10.99664 -10.92673 -10.70252 -10.39189 -10.36299 -9.49153 -9.30639 -9.23199 -8.98362 -8.81277 -8.03668 -6.22587 -4.30285 0.78695 0.84851 1.87364 2.21593 3.11280 3.21646 3.22155 3.27243 3.28502 3.71794 3.85332 3.90162 4.16842 4.23348 4.30778 4.43699 4.53582 4.62305 4.67949 4.87541 4.95004 5.05726 5.06187 5.13085 5.15970 5.20502 5.27831 5.48594 5.63847 5.67519 5.76957 5.80517 5.98955 6.04896 6.13366 6.28125 6.52749 6.99213 7.17744 7.25108 7.41535 7.46955 7.57928 7.88495 8.44818 8.66583 8.90908 9.36182 10.87406 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023954 B = 0.001990 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.645659 B =14069.128397 C =14542.055126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.080 4.080 3 H 0.091 0.909 4 C -0.097 4.097 5 C -0.082 4.082 6 C -0.126 4.126 7 C -0.095 4.095 8 C -0.153 4.153 9 C 0.103 3.897 10 F -0.139 7.139 11 C 0.131 3.869 12 H 0.141 0.859 13 O -0.526 6.526 14 C 0.433 3.567 15 O -0.501 6.501 16 O -0.319 6.319 17 C 0.043 3.957 18 C 0.500 3.500 19 O -0.533 6.533 20 N -0.706 5.706 21 C 0.252 3.748 22 C -0.547 4.547 23 H 0.064 0.936 24 C 0.064 3.936 25 N -0.884 5.884 26 Si 0.906 3.094 27 H -0.275 1.275 28 H -0.285 1.285 29 H -0.275 1.275 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.385 0.615 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.393 0.607 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.516 -5.626 17.141 27.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.099 4.099 3 H 0.109 0.891 4 C -0.098 4.098 5 C -0.100 4.100 6 C -0.144 4.144 7 C -0.113 4.113 8 C -0.171 4.171 9 C 0.084 3.916 10 F -0.117 7.117 11 C 0.070 3.930 12 H 0.158 0.842 13 O -0.331 6.331 14 C 0.274 3.726 15 O -0.388 6.388 16 O -0.234 6.234 17 C -0.035 4.035 18 C 0.283 3.717 19 O -0.410 6.410 20 N -0.356 5.356 21 C 0.132 3.868 22 C -0.585 4.585 23 H 0.082 0.918 24 C -0.140 4.140 25 N -0.521 5.521 26 Si 0.733 3.267 27 H -0.200 1.200 28 H -0.210 1.210 29 H -0.200 1.200 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.234 0.766 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.226 0.774 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.932 -6.491 17.501 27.308 hybrid contribution 0.106 1.670 -1.376 2.167 sum 20.038 -4.821 16.125 26.168 Atomic orbital electron populations 1.22023 0.90801 1.04053 1.04148 1.20742 0.98936 0.99658 0.90584 0.89056 1.19569 0.99009 0.95160 0.96085 1.20941 0.98585 0.92904 0.97614 1.21212 0.98234 1.00518 0.94408 1.21022 0.97339 0.93508 0.99416 1.21123 1.02793 0.96027 0.97195 1.17521 0.98849 0.79093 0.96166 1.91486 1.90905 1.34587 1.94759 1.21646 0.82351 1.01263 0.87780 0.84169 1.86659 1.15895 1.34575 1.96014 1.24775 0.81191 0.78509 0.88086 1.90690 1.56797 1.42680 1.48671 1.86651 1.24954 1.69168 1.42658 1.22940 0.95300 0.98456 0.86759 1.19849 0.87818 0.80815 0.83249 1.90709 1.66179 1.43035 1.41114 1.46379 1.11290 1.53932 1.24029 1.19173 0.72332 0.97940 0.97370 1.21167 0.92815 1.36302 1.08227 0.91822 1.24950 0.96284 0.95395 0.97339 1.69958 1.01685 1.42956 1.37549 0.86444 0.77595 0.80056 0.82641 1.20027 1.21028 1.20030 0.91739 0.89277 0.91319 0.84770 0.85167 0.85087 0.84807 0.76564 0.88474 0.88443 0.77430 0.95244 0.95236 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.48 37.16 0.32 -1.27 16 2 C -0.08 -0.75 2.31 -91.77 -0.21 -0.96 16 3 H 0.09 0.87 7.13 -51.93 -0.37 0.50 16 4 C -0.10 -0.87 4.44 -104.55 -0.46 -1.34 16 5 C -0.08 -0.64 8.71 -39.59 -0.34 -0.98 16 6 C -0.13 -0.83 10.04 -39.58 -0.40 -1.23 16 7 C -0.09 -0.60 10.04 -39.60 -0.40 -1.00 16 8 C -0.15 -1.16 10.03 -39.52 -0.40 -1.55 16 9 C 0.10 0.96 7.25 -39.42 -0.29 0.67 16 10 F -0.14 -1.42 16.19 2.25 0.04 -1.39 16 11 C 0.13 1.29 2.91 -27.88 -0.08 1.21 16 12 H 0.14 1.20 7.39 -51.93 -0.38 0.82 16 13 O -0.53 -5.32 12.62 -55.15 -0.70 -6.02 16 14 C 0.43 5.44 7.13 36.01 0.26 5.70 16 15 O -0.50 -7.29 16.07 -25.46 -0.41 -7.70 16 16 O -0.32 -4.51 6.98 -45.91 -0.32 -4.83 16 17 C 0.04 0.61 5.94 36.01 0.21 0.83 16 18 C 0.50 9.50 7.91 -10.99 -0.09 9.41 16 19 O -0.53 -12.24 16.50 -14.11 -0.23 -12.47 16 20 N -0.71 -14.12 5.55 -61.47 -0.34 -14.46 16 21 C 0.25 6.44 5.43 -5.19 -0.03 6.41 16 22 C -0.55 -14.43 9.28 -34.44 -0.32 -14.75 16 23 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 24 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 25 N -0.88 -25.50 13.29 55.43 0.74 -24.76 16 26 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 29 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.13 5.54 -51.93 -0.29 0.84 16 32 H 0.07 0.67 7.39 -51.92 -0.38 0.28 16 33 H 0.13 0.86 7.10 -52.49 -0.37 0.49 16 34 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 35 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 36 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 37 H 0.39 3.12 8.79 45.56 0.40 3.52 16 38 H 0.10 1.21 8.13 -51.93 -0.42 0.78 16 39 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 40 H 0.39 6.62 8.32 -40.82 -0.34 6.28 16 41 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -33.52 375.85 -7.56 -41.08 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -4.65 Total: 6.65 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -2.32 Total: 2.80 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.40 Total: -39.23 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -1.66 Total: -31.02 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.52 -7.56 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870073213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.245 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds