Wall clock time and date at job start Tue Mar 31 2020 23:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47409 * 2 1 4 4 C 1.50702 * 109.46987 * 119.99173 * 2 1 3 5 5 C 1.38225 * 120.00687 * 60.00289 * 4 2 1 6 6 C 1.38220 * 120.02081 * 180.02562 * 5 4 2 7 7 C 1.38270 * 120.05642 * 0.02562 * 6 5 4 8 8 C 1.38178 * 120.02255 * 359.97438 * 7 6 5 9 9 C 1.38433 * 120.01780 * 240.02307 * 4 2 1 10 10 F 1.35106 * 120.02319 * 0.02562 * 9 4 2 11 11 C 1.52992 * 109.47576 * 239.99655 * 2 1 3 12 12 H 1.09003 * 109.47654 * 185.00120 * 11 2 1 13 13 O 1.42900 * 109.47055 * 305.00207 * 11 2 1 14 14 C 1.50702 * 109.47170 * 64.99699 * 11 2 1 15 15 O 1.20825 * 120.00265 * 245.00325 * 14 11 2 16 16 O 1.34228 * 119.99478 * 65.00397 * 14 11 2 17 17 C 1.45210 * 116.99930 * 179.97438 * 16 14 11 18 18 C 1.50701 * 109.47165 * 180.02562 * 17 16 14 19 19 O 1.21283 * 119.99896 * 359.97438 * 18 17 16 20 20 N 1.34770 * 119.99618 * 180.02562 * 18 17 16 21 21 C 1.46502 * 119.99780 * 179.97438 * 20 18 17 22 22 C 1.50703 * 109.47393 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99867 * 0.02562 * 22 21 20 24 24 C 1.37878 * 120.00009 * 180.02562 * 22 21 20 25 25 N 1.31512 * 120.00196 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99653 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47345 * 59.99764 * 26 24 22 28 28 H 1.48502 * 109.47101 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.46978 * 299.99837 * 26 24 22 30 30 H 1.09006 * 109.47092 * 60.00555 * 1 2 3 31 31 H 1.08994 * 109.47458 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47276 * 300.01006 * 1 2 3 33 33 H 1.07994 * 119.98973 * 359.74709 * 5 4 2 34 34 H 1.08003 * 119.97247 * 180.02562 * 6 5 4 35 35 H 1.08000 * 119.99131 * 179.97438 * 7 6 5 36 36 H 1.07996 * 120.01148 * 180.02562 * 8 7 6 37 37 H 0.96701 * 114.00046 * 59.99532 * 13 11 2 38 38 H 1.09003 * 109.46419 * 299.99896 * 17 16 14 39 39 H 1.08995 * 109.46893 * 59.99540 * 17 16 14 40 40 H 0.97000 * 120.00371 * 359.97438 * 20 18 17 41 41 H 1.09000 * 109.47470 * 299.99727 * 21 20 18 42 42 H 1.09002 * 109.46942 * 59.99744 * 21 20 18 43 43 H 0.97000 * 119.99691 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 6 1.6984 -2.0336 1.4496 6 6 2.1586 -2.6851 2.5785 7 6 2.9526 -2.0141 3.4901 8 6 3.2876 -0.6912 3.2732 9 6 2.8277 -0.0376 2.1422 10 9 3.1538 1.2562 1.9296 11 6 2.0400 -0.7213 -1.2491 12 1 3.1264 -0.7995 -1.2054 13 8 1.4703 -2.0304 -1.3093 14 6 1.6414 0.0569 -2.4765 15 8 0.8689 -0.4233 -3.2719 16 8 2.1444 1.2836 -2.6861 17 6 1.7168 1.9747 -3.8895 18 6 2.3802 3.3262 -3.9552 19 8 3.1383 3.6731 -3.0744 20 7 2.1301 4.1498 -4.9923 21 6 2.7746 5.4639 -5.0559 22 6 2.3309 6.1811 -6.3049 23 1 1.6378 5.7058 -6.9832 24 6 2.8098 7.4441 -6.5815 25 7 3.6541 8.0228 -5.7558 26 14 2.2592 8.3333 -8.1293 27 1 0.7846 8.5066 -8.1027 28 1 2.9125 9.6654 -8.1939 29 1 2.6424 7.5352 -9.3216 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5140 0.8899 33 1 1.0742 -2.5573 0.7408 34 1 1.8976 -3.7192 2.7486 35 1 3.3112 -2.5241 4.3719 36 1 3.9082 -0.1674 3.9851 37 1 0.5041 -2.0373 -1.3502 38 1 1.9989 1.3889 -4.7644 39 1 0.6344 2.1012 -3.8706 40 1 1.5235 3.8725 -5.6966 41 1 2.4929 6.0496 -4.1808 42 1 3.8570 5.3372 -5.0752 43 1 3.9906 8.9115 -5.9504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870073227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:02 Heat of formation + Delta-G solvation = -198.246498 kcal Electronic energy + Delta-G solvation = -28761.378483 eV Core-core repulsion = 24300.119028 eV Total energy + Delta-G solvation = -4461.259455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.10339 -41.13307 -39.71349 -38.81967 -37.67805 -36.33125 -34.28858 -34.18267 -32.43553 -30.91292 -30.23316 -29.40637 -27.96693 -26.51800 -24.33748 -23.02303 -22.64749 -21.61170 -20.66135 -19.98847 -18.55695 -17.89127 -17.67819 -17.29207 -16.92522 -16.71495 -16.09965 -15.92787 -15.70190 -15.48102 -15.42655 -15.02157 -14.71202 -14.44207 -14.32642 -14.03338 -13.48020 -13.30827 -13.00023 -12.95196 -12.81918 -12.56298 -12.43933 -12.28155 -12.12828 -12.00526 -11.80562 -11.63823 -11.35248 -11.08934 -11.04548 -10.93084 -10.78724 -10.36493 -10.30088 -9.47562 -9.29289 -9.21410 -8.96108 -8.79811 -8.01745 -6.20971 -4.28721 0.78737 0.88890 1.87978 2.23421 3.13530 3.23091 3.23897 3.28059 3.29451 3.66477 3.86333 3.95628 4.12915 4.25946 4.32080 4.42899 4.53753 4.61478 4.66507 4.89009 4.91568 5.02107 5.05487 5.13796 5.15193 5.17798 5.28985 5.29983 5.50505 5.57248 5.71046 5.73551 5.83761 6.02192 6.07868 6.17034 6.56048 6.92116 7.19899 7.27107 7.43632 7.47221 7.59447 7.90173 8.46715 8.68537 8.93140 9.37620 10.89052 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021027 B = 0.002084 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.290648 B =13429.951779 C =14438.618713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.083 4.083 3 H 0.112 0.888 4 C -0.114 4.114 5 C -0.072 4.072 6 C -0.135 4.135 7 C -0.091 4.091 8 C -0.157 4.157 9 C 0.108 3.892 10 F -0.132 7.132 11 C 0.133 3.867 12 H 0.142 0.858 13 O -0.525 6.525 14 C 0.434 3.566 15 O -0.502 6.502 16 O -0.324 6.324 17 C 0.047 3.953 18 C 0.499 3.501 19 O -0.532 6.532 20 N -0.706 5.706 21 C 0.251 3.749 22 C -0.547 4.547 23 H 0.064 0.936 24 C 0.064 3.936 25 N -0.884 5.884 26 Si 0.906 3.094 27 H -0.275 1.275 28 H -0.285 1.285 29 H -0.275 1.275 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.383 0.617 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.393 0.607 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.196 -23.097 16.407 29.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.102 4.102 3 H 0.130 0.870 4 C -0.115 4.115 5 C -0.090 4.090 6 C -0.153 4.153 7 C -0.110 4.110 8 C -0.176 4.176 9 C 0.088 3.912 10 F -0.110 7.110 11 C 0.072 3.928 12 H 0.159 0.841 13 O -0.332 6.332 14 C 0.276 3.724 15 O -0.390 6.390 16 O -0.238 6.238 17 C -0.030 4.030 18 C 0.282 3.718 19 O -0.409 6.409 20 N -0.356 5.356 21 C 0.131 3.869 22 C -0.585 4.585 23 H 0.082 0.918 24 C -0.140 4.140 25 N -0.521 5.521 26 Si 0.733 3.267 27 H -0.200 1.200 28 H -0.210 1.210 29 H -0.200 1.200 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.159 0.841 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.233 0.767 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.226 0.774 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.123 -22.867 16.820 28.845 hybrid contribution -1.060 0.897 -1.417 1.984 sum -6.183 -21.970 15.403 27.535 Atomic orbital electron populations 1.21921 0.92944 1.02645 1.03531 1.20722 0.97465 1.01222 0.90754 0.86980 1.19612 1.00322 0.95309 0.96243 1.21131 0.98405 0.92692 0.96766 1.21232 0.98910 1.00473 0.94656 1.21047 0.97064 0.93499 0.99347 1.21156 1.02987 0.96035 0.97444 1.17628 0.98401 0.79284 0.95853 1.91551 1.90821 1.33984 1.94684 1.21495 1.01069 0.82451 0.87828 0.84066 1.86672 1.26726 1.24204 1.95620 1.24711 0.78476 0.80719 0.88473 1.90685 1.33212 1.69098 1.45998 1.86583 1.65393 1.28780 1.43065 1.22922 1.00683 0.92983 0.86459 1.19860 0.83171 0.85210 0.83595 1.90723 1.36375 1.75624 1.38199 1.46369 1.47377 1.19114 1.22782 1.19179 0.93481 0.76590 0.97610 1.21166 1.28810 1.01543 1.06972 0.91818 1.24955 0.94698 0.97091 0.97250 1.69961 1.30383 1.15387 1.36395 0.86441 0.78866 0.78758 0.82646 1.20037 1.21031 1.20027 0.91781 0.91703 0.90821 0.84140 0.85361 0.85161 0.84691 0.76684 0.88413 0.88467 0.77438 0.95231 0.95236 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.40 37.15 0.31 -0.86 16 2 C -0.08 -0.77 2.44 -91.78 -0.22 -0.99 16 3 H 0.11 1.26 7.10 -51.93 -0.37 0.89 16 4 C -0.11 -1.02 4.79 -104.55 -0.50 -1.52 16 5 C -0.07 -0.52 8.43 -39.59 -0.33 -0.86 16 6 C -0.13 -0.86 10.04 -39.58 -0.40 -1.25 16 7 C -0.09 -0.59 10.04 -39.59 -0.40 -0.99 16 8 C -0.16 -1.27 10.03 -39.51 -0.40 -1.67 16 9 C 0.11 1.08 7.25 -39.42 -0.29 0.80 16 10 F -0.13 -1.62 16.19 2.25 0.04 -1.58 16 11 C 0.13 1.30 3.21 -27.89 -0.09 1.21 16 12 H 0.14 1.34 8.14 -51.93 -0.42 0.92 16 13 O -0.53 -4.50 10.34 -55.14 -0.57 -5.07 16 14 C 0.43 5.52 6.25 36.01 0.23 5.74 16 15 O -0.50 -7.06 16.07 -25.46 -0.41 -7.47 16 16 O -0.32 -4.91 9.72 -45.90 -0.45 -5.36 16 17 C 0.05 0.70 5.94 36.01 0.21 0.91 16 18 C 0.50 9.88 7.91 -10.99 -0.09 9.80 16 19 O -0.53 -12.90 16.50 -14.10 -0.23 -13.14 16 20 N -0.71 -14.47 5.55 -61.47 -0.34 -14.81 16 21 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16 22 C -0.55 -14.59 9.28 -34.44 -0.32 -14.91 16 23 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 24 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 25 N -0.88 -25.78 13.29 55.43 0.74 -25.04 16 26 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 30 H 0.06 0.55 7.38 -51.93 -0.38 0.16 16 31 H 0.06 0.36 5.96 -51.93 -0.31 0.05 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.14 0.83 5.74 -52.49 -0.30 0.53 16 34 H 0.13 0.54 8.06 -52.48 -0.42 0.11 16 35 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.38 2.40 6.88 45.56 0.31 2.71 16 38 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 39 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 40 H 0.39 6.73 8.32 -40.82 -0.34 6.39 16 41 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 373.72 15.07 5.63 5.63 Total: -1.00 -34.25 373.72 -7.75 -42.00 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -4.73 Total: 5.64 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -2.41 Total: 3.60 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.40 Total: -39.85 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -1.66 Total: -31.04 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.25 -7.75 -42.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870073227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.247 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds