Wall clock time and date at job start Tue Mar 31 2020 23:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47409 * 2 1 4 4 C 1.50702 * 109.46987 * 119.99173 * 2 1 3 5 5 C 1.38225 * 120.00687 * 60.00289 * 4 2 1 6 6 C 1.38220 * 120.02081 * 180.02562 * 5 4 2 7 7 C 1.38270 * 120.05642 * 0.02562 * 6 5 4 8 8 C 1.38178 * 120.02255 * 359.97438 * 7 6 5 9 9 C 1.38433 * 120.01780 * 240.02307 * 4 2 1 10 10 F 1.35106 * 120.02319 * 0.02562 * 9 4 2 11 11 C 1.52992 * 109.47576 * 239.99655 * 2 1 3 12 12 H 1.09003 * 109.47654 * 185.00120 * 11 2 1 13 13 O 1.42900 * 109.47055 * 305.00207 * 11 2 1 14 14 C 1.50702 * 109.47170 * 64.99699 * 11 2 1 15 15 O 1.20825 * 120.00265 * 245.00325 * 14 11 2 16 16 O 1.34228 * 119.99478 * 65.00397 * 14 11 2 17 17 C 1.45210 * 116.99930 * 179.97438 * 16 14 11 18 18 C 1.50701 * 109.47165 * 180.02562 * 17 16 14 19 19 O 1.21283 * 119.99896 * 359.97438 * 18 17 16 20 20 N 1.34770 * 119.99618 * 180.02562 * 18 17 16 21 21 C 1.46502 * 119.99780 * 179.97438 * 20 18 17 22 22 C 1.50703 * 109.47393 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99867 * 0.02562 * 22 21 20 24 24 C 1.37878 * 120.00009 * 180.02562 * 22 21 20 25 25 N 1.31512 * 120.00196 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99653 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47345 * 59.99764 * 26 24 22 28 28 H 1.48502 * 109.47101 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.46978 * 299.99837 * 26 24 22 30 30 H 1.09006 * 109.47092 * 60.00555 * 1 2 3 31 31 H 1.08994 * 109.47458 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47276 * 300.01006 * 1 2 3 33 33 H 1.07994 * 119.98973 * 359.74709 * 5 4 2 34 34 H 1.08003 * 119.97247 * 180.02562 * 6 5 4 35 35 H 1.08000 * 119.99131 * 179.97438 * 7 6 5 36 36 H 1.07996 * 120.01148 * 180.02562 * 8 7 6 37 37 H 0.96701 * 114.00046 * 59.99532 * 13 11 2 38 38 H 1.09003 * 109.46419 * 299.99896 * 17 16 14 39 39 H 1.08995 * 109.46893 * 59.99540 * 17 16 14 40 40 H 0.97000 * 120.00371 * 359.97438 * 20 18 17 41 41 H 1.09000 * 109.47470 * 299.99727 * 21 20 18 42 42 H 1.09002 * 109.46942 * 59.99744 * 21 20 18 43 43 H 0.97000 * 119.99691 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 6 1.6984 -2.0336 1.4496 6 6 2.1586 -2.6851 2.5785 7 6 2.9526 -2.0141 3.4901 8 6 3.2876 -0.6912 3.2732 9 6 2.8277 -0.0376 2.1422 10 9 3.1538 1.2562 1.9296 11 6 2.0400 -0.7213 -1.2491 12 1 3.1264 -0.7995 -1.2054 13 8 1.4703 -2.0304 -1.3093 14 6 1.6414 0.0569 -2.4765 15 8 0.8689 -0.4233 -3.2719 16 8 2.1444 1.2836 -2.6861 17 6 1.7168 1.9747 -3.8895 18 6 2.3802 3.3262 -3.9552 19 8 3.1383 3.6731 -3.0744 20 7 2.1301 4.1498 -4.9923 21 6 2.7746 5.4639 -5.0559 22 6 2.3309 6.1811 -6.3049 23 1 1.6378 5.7058 -6.9832 24 6 2.8098 7.4441 -6.5815 25 7 3.6541 8.0228 -5.7558 26 14 2.2592 8.3333 -8.1293 27 1 0.7846 8.5066 -8.1027 28 1 2.9125 9.6654 -8.1939 29 1 2.6424 7.5352 -9.3216 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5140 0.8899 33 1 1.0742 -2.5573 0.7408 34 1 1.8976 -3.7192 2.7486 35 1 3.3112 -2.5241 4.3719 36 1 3.9082 -0.1674 3.9851 37 1 0.5041 -2.0373 -1.3502 38 1 1.9989 1.3889 -4.7644 39 1 0.6344 2.1012 -3.8706 40 1 1.5235 3.8725 -5.6966 41 1 2.4929 6.0496 -4.1808 42 1 3.8570 5.3372 -5.0752 43 1 3.9906 8.9115 -5.9504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870073227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:01 Heat of formation + Delta-G solvation = -220.964074 kcal Electronic energy + Delta-G solvation = -28762.363591 eV Core-core repulsion = 24300.119028 eV Total energy + Delta-G solvation = -4462.244563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.91545 -42.14258 -40.69815 -40.15323 -38.54384 -37.40251 -36.21211 -34.86127 -34.43905 -31.52580 -31.18417 -30.49192 -29.16049 -28.03771 -25.11760 -24.55926 -23.60677 -22.52491 -21.69690 -21.42235 -19.60927 -19.09490 -18.64822 -18.33951 -18.06565 -17.60153 -17.45815 -17.09453 -16.81569 -16.63688 -16.40302 -16.34727 -15.94446 -15.81230 -15.12051 -14.88276 -14.74489 -14.39670 -14.19105 -14.11573 -13.93017 -13.68644 -13.61427 -13.38154 -13.04265 -12.97776 -12.94589 -12.82179 -12.69341 -12.27380 -12.25460 -12.05734 -11.97577 -11.87133 -11.54239 -11.15124 -10.91816 -10.82155 -9.96005 -9.86645 -9.59144 -8.30711 -6.47756 0.18499 0.31146 0.87476 1.12879 1.43544 1.46978 1.51988 1.55507 2.30450 2.49215 2.67770 2.96709 3.04295 3.30414 3.40226 3.47561 3.63032 3.71657 3.76613 3.95039 3.99070 4.01035 4.14187 4.26845 4.37822 4.45814 4.49477 4.66068 4.87225 5.00951 5.03328 5.09839 5.14045 5.16682 5.19527 5.27582 5.39324 5.45627 5.53731 5.60632 5.80250 5.99905 6.26284 6.49825 6.60826 6.75103 7.18515 7.33405 8.81135 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021027 B = 0.002084 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.290648 B =13429.951779 C =14438.618713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.078 4.078 3 H 0.083 0.917 4 C -0.121 4.121 5 C -0.074 4.074 6 C -0.129 4.129 7 C -0.089 4.089 8 C -0.165 4.165 9 C 0.071 3.929 10 F -0.156 7.156 11 C 0.143 3.857 12 H 0.143 0.857 13 O -0.521 6.521 14 C 0.438 3.562 15 O -0.513 6.513 16 O -0.345 6.345 17 C 0.058 3.942 18 C 0.498 3.502 19 O -0.583 6.583 20 N -0.698 5.698 21 C 0.267 3.733 22 C -0.558 4.558 23 H 0.087 0.913 24 C 0.004 3.996 25 N -0.930 5.930 26 Si 0.986 3.014 27 H -0.262 1.262 28 H -0.286 1.286 29 H -0.262 1.262 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.142 0.858 37 H 0.395 0.605 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.413 0.587 41 H -0.008 1.008 42 H -0.008 1.008 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 -25.820 15.682 31.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 H 0.102 0.898 4 C -0.122 4.122 5 C -0.092 4.092 6 C -0.147 4.147 7 C -0.107 4.107 8 C -0.184 4.184 9 C 0.052 3.948 10 F -0.135 7.135 11 C 0.082 3.918 12 H 0.160 0.840 13 O -0.329 6.329 14 C 0.281 3.719 15 O -0.401 6.401 16 O -0.261 6.261 17 C -0.018 4.018 18 C 0.284 3.716 19 O -0.464 6.464 20 N -0.350 5.350 21 C 0.144 3.856 22 C -0.596 4.596 23 H 0.105 0.895 24 C -0.196 4.196 25 N -0.568 5.568 26 Si 0.809 3.191 27 H -0.186 1.186 28 H -0.212 1.212 29 H -0.186 1.186 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.176 0.824 36 H 0.160 0.840 37 H 0.247 0.753 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.249 0.751 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.071 -25.646 16.078 31.083 hybrid contribution -0.456 1.633 -1.083 2.011 sum -7.526 -24.013 14.995 29.293 Atomic orbital electron populations 1.21926 0.91628 1.04209 1.02988 1.20602 0.98533 0.99676 0.90893 0.89843 1.19631 1.00621 0.96103 0.95841 1.21358 0.98461 0.91831 0.97563 1.21631 0.97643 1.01684 0.93728 1.21416 0.96369 0.92665 1.00238 1.21385 1.03058 0.96991 0.96961 1.18055 1.00346 0.78826 0.97580 1.91485 1.91302 1.35696 1.94991 1.21439 1.01219 0.82544 0.86602 0.84009 1.86669 1.27896 1.22969 1.95397 1.25254 0.77879 0.79745 0.88982 1.90672 1.33748 1.69069 1.46604 1.86591 1.66178 1.30106 1.43208 1.22789 1.01431 0.89985 0.87630 1.20703 0.82120 0.86701 0.82087 1.90701 1.38647 1.77064 1.39944 1.46039 1.47448 1.17535 1.23956 1.18625 0.91656 0.78843 0.96437 1.21580 1.28990 1.01903 1.07120 0.89528 1.26076 0.94495 0.98125 1.00940 1.70129 1.31938 1.15920 1.38831 0.85186 0.78830 0.77044 0.78029 1.18622 1.21183 1.18643 0.92767 0.89041 0.90915 0.82521 0.82456 0.82356 0.83995 0.75309 0.85755 0.85553 0.75086 0.99016 0.99049 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.40 71.98 0.60 -1.56 16 2 C -0.08 -1.45 2.44 -11.54 -0.03 -1.48 16 3 H 0.08 2.04 7.10 -2.38 -0.02 2.02 16 4 C -0.12 -2.12 4.79 -19.82 -0.09 -2.22 16 5 C -0.07 -0.92 8.43 22.26 0.19 -0.73 16 6 C -0.13 -1.24 10.04 22.27 0.22 -1.02 16 7 C -0.09 -0.94 10.04 22.26 0.22 -0.72 16 8 C -0.17 -2.61 10.03 22.31 0.22 -2.38 16 9 C 0.07 1.48 7.25 22.37 0.16 1.64 16 10 F -0.16 -4.21 16.19 44.97 0.73 -3.48 16 11 C 0.14 2.70 3.21 29.85 0.10 2.79 16 12 H 0.14 2.67 8.14 -2.39 -0.02 2.65 16 13 O -0.52 -7.71 10.34 -129.95 -1.34 -9.06 16 14 C 0.44 10.72 6.25 71.24 0.45 11.16 16 15 O -0.51 -13.40 16.07 28.39 0.46 -12.94 16 16 O -0.35 -10.44 9.72 -45.05 -0.44 -10.88 16 17 C 0.06 1.67 5.94 71.24 0.42 2.09 16 18 C 0.50 20.10 7.91 87.66 0.69 20.79 16 19 O -0.58 -29.73 16.50 15.76 0.26 -29.47 16 20 N -0.70 -28.93 5.55 -466.78 -2.59 -31.52 16 21 C 0.27 14.50 5.43 85.63 0.46 14.96 16 22 C -0.56 -29.94 9.28 25.60 0.24 -29.70 16 23 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 24 C 0.00 0.19 5.46 84.66 0.46 0.65 16 25 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 26 Si 0.99 41.93 29.54 68.60 2.03 43.96 16 27 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 28 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 29 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 30 H 0.05 0.89 7.38 -2.38 -0.02 0.87 16 31 H 0.09 0.78 5.96 -2.39 -0.01 0.77 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.16 1.34 5.74 -2.91 -0.02 1.32 16 34 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 35 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 36 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.39 3.78 6.88 -74.06 -0.51 3.27 16 38 H 0.12 2.94 8.13 -2.39 -0.02 2.92 16 39 H 0.13 2.91 8.13 -2.39 -0.02 2.89 16 40 H 0.41 13.66 8.32 -92.71 -0.77 12.89 16 41 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 43 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -77.95 373.72 3.50 -74.45 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -0.21 Total: 20.20 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 4.32 Total: 14.29 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -2.30 Total: -87.07 kcal Atomic # 8 Polarization: -61.29 SS G_CDS: -1.07 Total: -62.35 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.73 Total: -3.48 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -77.95 3.50 -74.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870073227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.518 kcal (2) G-P(sol) polarization free energy of solvation -77.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds