Wall clock time and date at job start Tue Mar 31 2020 23:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47082 * 2 1 4 4 C 1.50702 * 109.46955 * 240.00559 * 2 1 3 5 5 C 1.38218 * 120.01214 * 300.02269 * 4 2 1 6 6 C 1.38225 * 120.02313 * 179.97438 * 5 4 2 7 7 C 1.38270 * 120.05340 * 359.97438 * 6 5 4 8 8 C 1.38175 * 120.02272 * 359.97438 * 7 6 5 9 9 C 1.38436 * 120.01380 * 119.99829 * 4 2 1 10 10 F 1.35106 * 120.02572 * 0.02562 * 9 4 2 11 11 C 1.52999 * 109.47445 * 120.00557 * 2 1 3 12 12 H 1.09006 * 109.46672 * 59.99928 * 11 2 1 13 13 O 1.42897 * 109.47388 * 179.97438 * 11 2 1 14 14 C 1.50697 * 109.47210 * 300.00252 * 11 2 1 15 15 O 1.20828 * 119.99764 * 245.00334 * 14 11 2 16 16 O 1.34228 * 120.00182 * 64.99305 * 14 11 2 17 17 C 1.45202 * 116.99882 * 180.02562 * 16 14 11 18 18 C 1.50705 * 109.47151 * 180.02562 * 17 16 14 19 19 O 1.21276 * 119.99741 * 0.02562 * 18 17 16 20 20 N 1.34770 * 119.99833 * 179.97438 * 18 17 16 21 21 C 1.46506 * 119.99984 * 180.02562 * 20 18 17 22 22 C 1.50689 * 109.47479 * 180.02562 * 21 20 18 23 23 H 1.08005 * 120.00133 * 359.97438 * 22 21 20 24 24 C 1.37875 * 120.00289 * 180.02562 * 22 21 20 25 25 N 1.31521 * 120.00306 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00093 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46933 * 90.00299 * 26 24 22 28 28 H 1.48499 * 109.47612 * 210.00412 * 26 24 22 29 29 H 1.48504 * 109.47062 * 330.00733 * 26 24 22 30 30 H 1.08996 * 109.46827 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46572 * 299.99071 * 1 2 3 32 32 H 1.08993 * 109.47324 * 59.99227 * 1 2 3 33 33 H 1.08000 * 119.98639 * 359.97438 * 5 4 2 34 34 H 1.08003 * 119.97189 * 180.02562 * 6 5 4 35 35 H 1.07999 * 119.98207 * 180.27551 * 7 6 5 36 36 H 1.08001 * 120.00487 * 180.02562 * 8 7 6 37 37 H 0.96693 * 113.99727 * 59.99509 * 13 11 2 38 38 H 1.09000 * 109.47256 * 299.99887 * 17 16 14 39 39 H 1.08997 * 109.47122 * 60.00280 * 17 16 14 40 40 H 0.96997 * 120.00652 * 0.02562 * 20 18 17 41 41 H 1.09007 * 109.47016 * 300.00630 * 21 20 18 42 42 H 1.08995 * 109.46826 * 59.99646 * 21 20 18 43 43 H 0.97000 * 120.00091 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 1.6982 -2.0334 -1.4499 6 6 2.1583 -2.6850 -2.5788 7 6 2.9528 -2.0140 -3.4900 8 6 3.2873 -0.6910 -3.2734 9 6 2.8282 -0.0377 -2.1420 10 9 3.1555 1.2556 -1.9286 11 6 2.0401 -0.7214 1.2491 12 1 1.6768 -1.7491 1.2490 13 8 3.4691 -0.7219 1.2488 14 6 1.5378 -0.0111 2.4797 15 8 2.3192 0.5264 3.2283 16 8 0.2223 0.0245 2.7440 17 6 -0.1896 0.7267 3.9463 18 6 -1.6896 0.6614 4.0773 19 8 -2.3465 0.0799 3.2400 20 7 -2.3007 1.2483 5.1253 21 6 -3.7588 1.1844 5.2529 22 6 -4.1863 1.9132 6.5006 23 1 -3.4460 2.3774 7.1354 24 6 -5.5225 1.9867 6.8324 25 7 -5.8957 2.6233 7.9211 26 14 -6.8030 1.1834 5.7350 27 1 -7.0256 -0.2167 6.1771 28 1 -8.0777 1.9398 5.8258 29 1 -6.3236 1.1883 4.3295 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5137 0.8901 32 1 -0.3633 0.5139 -0.8898 33 1 1.0773 -2.5583 -0.7390 34 1 1.8964 -3.7188 -2.7495 35 1 3.3081 -2.5229 -4.3739 36 1 3.9076 -0.1671 -3.9856 37 1 3.8627 0.1613 1.2486 38 1 0.2713 0.2590 4.8163 39 1 0.1250 1.7685 3.8845 40 1 -1.7752 1.7132 5.7952 41 1 -4.2205 1.6519 4.3831 42 1 -4.0726 0.1424 5.3147 43 1 -6.8358 2.6753 8.1543 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870073235.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:04 Heat of formation + Delta-G solvation = -216.724129 kcal Electronic energy + Delta-G solvation = -28854.749039 eV Core-core repulsion = 24392.688333 eV Total energy + Delta-G solvation = -4462.060705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.91932 -42.13104 -40.63178 -40.13414 -38.43455 -37.46305 -36.19803 -35.21914 -34.46038 -31.51226 -31.37158 -30.64187 -29.09645 -27.83523 -25.17129 -24.17100 -23.61031 -22.51525 -21.72693 -21.54492 -19.73132 -19.21592 -18.72563 -18.48306 -18.00729 -17.74053 -17.48877 -16.99753 -16.78106 -16.59918 -16.40402 -16.21249 -15.86859 -15.62942 -15.08979 -14.96769 -14.67872 -14.58023 -14.44717 -14.13723 -14.07934 -13.84716 -13.64172 -13.34285 -13.14448 -13.08879 -12.91092 -12.82251 -12.70579 -12.26533 -11.98335 -11.93242 -11.82227 -11.73901 -11.67379 -11.27669 -10.94598 -10.92326 -10.03362 -9.86982 -9.58500 -8.40152 -6.47987 0.20092 0.28941 0.88153 1.10593 1.34081 1.36934 1.48139 1.52266 2.28091 2.40574 2.65574 2.95226 3.00123 3.25299 3.41964 3.49269 3.60066 3.68819 3.79508 3.97003 4.02197 4.04212 4.17513 4.27252 4.32169 4.43945 4.52696 4.74549 4.82226 4.94442 4.99558 5.00985 5.09689 5.12729 5.23169 5.23792 5.38212 5.40630 5.43341 5.52347 5.98315 6.04881 6.23608 6.48544 6.52652 6.71662 7.11227 7.26775 8.74370 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.002140 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.488224 B =13082.305080 C =13752.947780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.070 4.070 3 H 0.084 0.916 4 C -0.109 4.109 5 C -0.092 4.092 6 C -0.125 4.125 7 C -0.093 4.093 8 C -0.159 4.159 9 C 0.078 3.922 10 F -0.151 7.151 11 C 0.139 3.861 12 H 0.157 0.843 13 O -0.531 6.531 14 C 0.437 3.563 15 O -0.521 6.521 16 O -0.329 6.329 17 C 0.051 3.949 18 C 0.506 3.494 19 O -0.571 6.571 20 N -0.699 5.699 21 C 0.233 3.767 22 C -0.549 4.549 23 H 0.060 0.940 24 C 0.025 3.975 25 N -0.931 5.931 26 Si 0.939 3.061 27 H -0.264 1.264 28 H -0.275 1.275 29 H -0.257 1.257 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.146 0.854 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.147 0.853 37 H 0.393 0.607 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.412 0.588 41 H 0.018 0.982 42 H 0.017 0.983 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.458 -10.032 -23.369 32.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 H 0.103 0.897 4 C -0.110 4.110 5 C -0.110 4.110 6 C -0.143 4.143 7 C -0.111 4.111 8 C -0.178 4.178 9 C 0.059 3.941 10 F -0.130 7.130 11 C 0.078 3.922 12 H 0.174 0.826 13 O -0.338 6.338 14 C 0.280 3.720 15 O -0.409 6.409 16 O -0.244 6.244 17 C -0.026 4.026 18 C 0.292 3.708 19 O -0.451 6.451 20 N -0.350 5.350 21 C 0.110 3.890 22 C -0.587 4.587 23 H 0.078 0.922 24 C -0.176 4.176 25 N -0.570 5.570 26 Si 0.762 3.238 27 H -0.189 1.189 28 H -0.200 1.200 29 H -0.181 1.181 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.164 0.836 34 H 0.172 0.828 35 H 0.176 0.824 36 H 0.165 0.835 37 H 0.243 0.757 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.248 0.752 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.968 -10.787 -23.581 32.729 hybrid contribution -0.428 1.373 0.716 1.606 sum 19.541 -9.414 -22.866 31.517 Atomic orbital electron populations 1.21949 0.91537 1.04112 1.02969 1.20587 0.98114 0.99433 0.90760 0.89721 1.19555 0.99786 0.95781 0.95832 1.21184 0.98844 0.92516 0.98479 1.21572 0.97396 1.01620 0.93722 1.21399 0.96531 0.92992 1.00136 1.21393 1.02751 0.96723 0.96920 1.17828 1.00113 0.78864 0.97306 1.91451 1.91250 1.35336 1.94977 1.21738 0.82229 1.01717 0.86519 0.82556 1.86645 1.15931 1.35400 1.95833 1.25313 0.80264 0.77966 0.88432 1.90691 1.57019 1.43669 1.49555 1.86659 1.26007 1.69304 1.42410 1.22780 0.91327 1.00399 0.88071 1.20480 0.89838 0.78923 0.81577 1.90680 1.67616 1.44457 1.42310 1.45878 1.08890 1.54869 1.25400 1.19159 0.77739 0.96148 0.95941 1.21284 0.93872 1.35717 1.07807 0.92193 1.25628 1.00582 0.95112 0.96243 1.69986 1.17945 1.43085 1.25956 0.85841 0.78621 0.79205 0.80135 1.18938 1.20039 1.18083 0.90629 0.91428 0.91761 0.83592 0.82757 0.82380 0.83543 0.75676 0.86120 0.86107 0.75225 0.96401 0.96489 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.48 71.98 0.61 -2.20 16 2 C -0.07 -1.19 2.31 -11.54 -0.03 -1.22 16 3 H 0.08 1.54 7.13 -2.39 -0.02 1.53 16 4 C -0.11 -1.75 4.43 -19.82 -0.09 -1.83 16 5 C -0.09 -1.17 8.71 22.26 0.19 -0.98 16 6 C -0.13 -1.22 10.04 22.27 0.22 -1.00 16 7 C -0.09 -0.88 10.04 22.26 0.22 -0.66 16 8 C -0.16 -2.07 10.03 22.31 0.22 -1.85 16 9 C 0.08 1.34 7.25 22.37 0.16 1.51 16 10 F -0.15 -3.03 16.20 44.97 0.73 -2.30 16 11 C 0.14 2.44 2.91 29.85 0.09 2.53 16 12 H 0.16 2.23 7.39 -2.38 -0.02 2.21 16 13 O -0.53 -9.74 12.62 -129.96 -1.64 -11.38 16 14 C 0.44 10.02 7.13 71.23 0.51 10.53 16 15 O -0.52 -14.07 16.07 28.38 0.46 -13.61 16 16 O -0.33 -8.41 6.98 -45.04 -0.31 -8.73 16 17 C 0.05 1.30 5.94 71.24 0.42 1.73 16 18 C 0.51 17.67 7.91 87.66 0.69 18.36 16 19 O -0.57 -24.22 16.50 15.78 0.26 -23.96 16 20 N -0.70 -26.24 5.55 -466.80 -2.59 -28.83 16 21 C 0.23 10.94 4.50 85.63 0.38 11.33 16 22 C -0.55 -29.47 9.83 25.60 0.25 -29.22 16 23 H 0.06 3.38 7.84 -2.91 -0.02 3.36 16 24 C 0.02 1.37 5.47 84.65 0.46 1.83 16 25 N -0.93 -54.86 13.96 21.45 0.30 -54.56 16 26 Si 0.94 42.90 27.47 68.60 1.88 44.79 16 27 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 28 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 29 H -0.26 -11.50 6.54 99.48 0.65 -10.85 16 30 H 0.07 1.29 7.39 -2.39 -0.02 1.27 16 31 H 0.07 1.59 5.54 -2.39 -0.01 1.58 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.15 1.40 7.10 -2.91 -0.02 1.38 16 34 H 0.15 0.72 8.06 -2.91 -0.02 0.69 16 35 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 36 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 37 H 0.39 5.81 8.79 -74.06 -0.65 5.16 16 38 H 0.12 2.63 8.13 -2.39 -0.02 2.61 16 39 H 0.12 2.61 8.13 -2.39 -0.02 2.59 16 40 H 0.41 13.32 8.32 -92.71 -0.77 12.55 16 41 H 0.02 0.89 7.20 -2.38 -0.02 0.87 16 42 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 43 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -72.09 372.25 3.02 -69.07 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -0.40 Total: 20.65 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 4.33 Total: 8.85 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -2.29 Total: -83.39 kcal Atomic # 8 Polarization: -56.44 SS G_CDS: -1.24 Total: -57.68 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.73 Total: -2.30 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.79 kcal Total: -72.09 3.02 -69.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870073235.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.654 kcal (2) G-P(sol) polarization free energy of solvation -72.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds