Wall clock time and date at job start Tue Mar 31 2020 23:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47056 * 2 1 4 4 C 1.50699 * 109.47172 * 239.99821 * 2 1 3 5 5 C 1.38216 * 120.01501 * 300.02415 * 4 2 1 6 6 C 1.38226 * 120.02514 * 179.97438 * 5 4 2 7 7 C 1.38265 * 120.05338 * 0.02562 * 6 5 4 8 8 C 1.38176 * 120.02279 * 359.74109 * 7 6 5 9 9 C 1.38436 * 120.00926 * 119.99778 * 4 2 1 10 10 F 1.35104 * 120.02854 * 0.02562 * 9 4 2 11 11 C 1.53002 * 109.46986 * 119.99677 * 2 1 3 12 12 H 1.09003 * 109.46879 * 179.97438 * 11 2 1 13 13 O 1.42898 * 109.46980 * 60.00697 * 11 2 1 14 14 C 1.50694 * 109.47447 * 300.00382 * 11 2 1 15 15 O 1.20823 * 120.00213 * 115.00338 * 14 11 2 16 16 O 1.34228 * 119.99693 * 294.99587 * 14 11 2 17 17 C 1.45208 * 116.99902 * 179.97438 * 16 14 11 18 18 C 1.50703 * 109.46864 * 180.02562 * 17 16 14 19 19 O 1.21271 * 120.00146 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99454 * 180.02562 * 18 17 16 21 21 C 1.46502 * 119.99813 * 179.97438 * 20 18 17 22 22 C 1.50692 * 109.47227 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00181 * 359.97438 * 22 21 20 24 24 C 1.37878 * 120.00240 * 180.02562 * 22 21 20 25 25 N 1.31517 * 119.99700 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00403 * 179.97438 * 24 22 21 27 27 H 1.48510 * 109.46956 * 359.97438 * 26 24 22 28 28 H 1.48505 * 109.47390 * 119.99663 * 26 24 22 29 29 H 1.48498 * 109.47235 * 240.00248 * 26 24 22 30 30 H 1.09001 * 109.47308 * 59.99930 * 1 2 3 31 31 H 1.09003 * 109.47056 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47235 * 299.99681 * 1 2 3 33 33 H 1.08001 * 119.98628 * 359.97438 * 5 4 2 34 34 H 1.08001 * 119.97063 * 179.97438 * 6 5 4 35 35 H 1.07993 * 119.98889 * 180.02562 * 7 6 5 36 36 H 1.07999 * 120.01677 * 180.27805 * 8 7 6 37 37 H 0.96705 * 113.99787 * 299.99000 * 13 11 2 38 38 H 1.08999 * 109.46955 * 300.00165 * 17 16 14 39 39 H 1.09001 * 109.46889 * 60.00126 * 17 16 14 40 40 H 0.96993 * 120.00167 * 359.97438 * 20 18 17 41 41 H 1.09004 * 109.46942 * 299.99985 * 21 20 18 42 42 H 1.08998 * 109.46921 * 59.99702 * 21 20 18 43 43 H 0.97000 * 119.99493 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.6982 -2.0336 -1.4497 6 6 2.1584 -2.6852 -2.5785 7 6 2.9538 -2.0147 -3.4892 8 6 3.2851 -0.6906 -3.2745 9 6 2.8282 -0.0379 -2.1418 10 9 3.1554 1.2555 -1.9286 11 6 2.0399 -0.7212 1.2493 12 1 3.1300 -0.7216 1.2491 13 8 1.5637 -2.0685 1.2493 14 6 1.5376 -0.0109 2.4797 15 8 0.7704 -0.5684 3.2283 16 8 1.9425 1.2413 2.7441 17 6 1.4176 1.8639 3.9463 18 6 1.9783 3.2567 4.0765 19 8 2.7451 3.6824 3.2390 20 7 1.6283 4.0287 5.1244 21 6 2.1738 5.3824 5.2513 22 6 1.6290 6.0286 6.4989 23 1 0.9444 5.4854 7.1336 24 6 2.0035 7.3136 6.8296 25 7 2.8367 7.9753 6.0565 26 14 1.3276 8.1149 8.3757 27 1 0.4162 7.1674 9.0664 28 1 2.4503 8.4710 9.2802 29 1 0.5782 9.3436 8.0094 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.0773 -2.5584 -0.7387 34 1 1.8971 -3.7193 -2.7487 35 1 3.3124 -2.5248 -4.3710 36 1 3.9027 -0.1656 -3.9883 37 1 0.5997 -2.1449 1.2493 38 1 0.3306 1.9146 3.8842 39 1 1.7048 1.2734 4.8163 40 1 1.0153 3.6880 5.7944 41 1 3.2609 5.3317 5.3130 42 1 1.8864 5.9730 4.3815 43 1 3.1004 8.8792 6.2894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870073238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:08 Heat of formation + Delta-G solvation = -220.342830 kcal Electronic energy + Delta-G solvation = -28757.011476 eV Core-core repulsion = 24294.793852 eV Total energy + Delta-G solvation = -4462.217624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.91454 -42.14973 -40.70301 -40.15266 -38.52486 -37.39418 -36.21289 -34.87328 -34.43955 -31.53695 -31.18493 -30.50568 -29.12637 -28.02670 -25.14348 -24.56066 -23.60065 -22.52517 -21.69495 -21.43089 -19.59995 -19.09174 -18.64506 -18.35893 -18.07569 -17.58733 -17.46853 -17.09766 -16.81528 -16.61195 -16.40285 -16.35060 -15.92552 -15.81675 -15.09937 -14.87689 -14.75045 -14.38491 -14.20032 -14.12246 -13.93932 -13.71141 -13.64419 -13.38123 -13.04233 -12.95518 -12.92621 -12.81865 -12.77109 -12.26935 -12.23838 -12.04634 -11.96687 -11.87448 -11.48735 -11.13362 -10.91321 -10.84864 -9.95906 -9.86237 -9.58707 -8.31330 -6.48044 0.18879 0.31731 0.88184 1.13208 1.43549 1.43980 1.52191 1.57742 2.30326 2.49146 2.68346 2.96313 3.03994 3.30132 3.41093 3.47600 3.62901 3.70568 3.77932 3.95149 3.99315 4.01474 4.14305 4.26223 4.38112 4.46045 4.49456 4.65603 4.86806 5.01008 5.03225 5.09249 5.14375 5.16775 5.19537 5.27669 5.39679 5.45760 5.54099 5.60710 5.80252 6.00158 6.26393 6.49992 6.61186 6.75248 7.18487 7.33420 8.81005 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021847 B = 0.002059 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.305699 B =13593.702243 C =14554.206374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 H 0.084 0.916 4 C -0.121 4.121 5 C -0.073 4.073 6 C -0.130 4.130 7 C -0.089 4.089 8 C -0.165 4.165 9 C 0.071 3.929 10 F -0.156 7.156 11 C 0.143 3.857 12 H 0.143 0.857 13 O -0.520 6.520 14 C 0.439 3.561 15 O -0.513 6.513 16 O -0.345 6.345 17 C 0.058 3.942 18 C 0.498 3.502 19 O -0.583 6.583 20 N -0.698 5.698 21 C 0.266 3.734 22 C -0.556 4.556 23 H 0.087 0.913 24 C 0.003 3.997 25 N -0.930 5.930 26 Si 0.986 3.014 27 H -0.252 1.252 28 H -0.279 1.279 29 H -0.279 1.279 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.142 0.858 37 H 0.394 0.606 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.413 0.587 41 H -0.008 1.008 42 H -0.008 1.008 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.041 -25.991 -16.602 31.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 H 0.103 0.897 4 C -0.122 4.122 5 C -0.091 4.091 6 C -0.147 4.147 7 C -0.107 4.107 8 C -0.184 4.184 9 C 0.052 3.948 10 F -0.134 7.134 11 C 0.081 3.919 12 H 0.160 0.840 13 O -0.329 6.329 14 C 0.282 3.718 15 O -0.401 6.401 16 O -0.261 6.261 17 C -0.018 4.018 18 C 0.284 3.716 19 O -0.463 6.463 20 N -0.350 5.350 21 C 0.144 3.856 22 C -0.594 4.594 23 H 0.105 0.895 24 C -0.197 4.197 25 N -0.569 5.569 26 Si 0.809 3.191 27 H -0.176 1.176 28 H -0.205 1.205 29 H -0.205 1.205 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.176 0.824 36 H 0.160 0.840 37 H 0.247 0.753 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.249 0.751 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.017 -25.740 -16.949 31.225 hybrid contribution -0.557 1.566 1.077 1.981 sum -5.574 -24.174 -15.872 29.451 Atomic orbital electron populations 1.21930 0.91785 1.04108 1.02893 1.20594 0.98385 0.99764 0.90920 0.89719 1.19613 1.00611 0.96113 0.95814 1.21370 0.98478 0.91817 0.97440 1.21630 0.97646 1.01692 0.93770 1.21410 0.96379 0.92677 1.00243 1.21382 1.03133 0.96959 0.96932 1.18042 1.00346 0.78835 0.97543 1.91481 1.91269 1.35716 1.94984 1.21438 1.01459 0.82322 0.86646 0.83995 1.86688 1.29326 1.21383 1.95486 1.25221 0.78461 0.79597 0.88488 1.90672 1.33806 1.66333 1.49289 1.86591 1.66575 1.29527 1.43370 1.22787 1.00983 0.90347 0.87716 1.20703 0.81651 0.87487 0.81756 1.90698 1.37522 1.75342 1.42781 1.46040 1.47905 1.15972 1.25073 1.18631 0.92830 0.77923 0.96227 1.21641 1.29243 1.00233 1.08285 0.89518 1.26076 0.94910 0.97666 1.01026 1.70143 1.34243 1.12621 1.39844 0.85088 0.78186 0.78225 0.77573 1.17562 1.20516 1.20511 0.90897 0.89180 0.92969 0.82537 0.82487 0.82386 0.83975 0.75342 0.85568 0.85756 0.75094 0.99026 0.99000 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.45 71.98 0.61 -1.61 16 2 C -0.08 -1.44 2.50 -11.54 -0.03 -1.47 16 3 H 0.08 2.05 7.13 -2.39 -0.02 2.03 16 4 C -0.12 -2.09 4.79 -19.82 -0.09 -2.19 16 5 C -0.07 -0.89 8.30 22.26 0.18 -0.71 16 6 C -0.13 -1.23 10.04 22.27 0.22 -1.01 16 7 C -0.09 -0.93 10.04 22.26 0.22 -0.71 16 8 C -0.17 -2.56 10.03 22.31 0.22 -2.33 16 9 C 0.07 1.47 7.25 22.38 0.16 1.63 16 10 F -0.16 -4.10 16.19 44.97 0.73 -3.38 16 11 C 0.14 2.68 3.28 29.85 0.10 2.77 16 12 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 13 O -0.52 -7.70 10.28 -129.95 -1.34 -9.03 16 14 C 0.44 10.66 6.01 71.23 0.43 11.09 16 15 O -0.51 -13.31 16.07 28.39 0.46 -12.85 16 16 O -0.35 -10.36 9.75 -45.04 -0.44 -10.80 16 17 C 0.06 1.66 5.94 71.24 0.42 2.08 16 18 C 0.50 20.02 7.91 87.66 0.69 20.71 16 19 O -0.58 -29.61 16.50 15.80 0.26 -29.35 16 20 N -0.70 -28.84 5.55 -466.80 -2.59 -31.43 16 21 C 0.27 14.44 5.43 85.63 0.46 14.90 16 22 C -0.56 -29.80 9.28 25.60 0.24 -29.56 16 23 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 24 C 0.00 0.16 5.46 84.65 0.46 0.62 16 25 N -0.93 -55.77 13.29 21.45 0.28 -55.49 16 26 Si 0.99 41.95 29.54 68.60 2.03 43.98 16 27 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 28 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 29 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 0.81 6.03 -2.39 -0.01 0.79 16 32 H 0.05 0.89 7.22 -2.39 -0.02 0.88 16 33 H 0.16 1.28 5.51 -2.91 -0.02 1.27 16 34 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 35 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 36 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.39 3.71 6.75 -74.05 -0.50 3.21 16 38 H 0.13 2.89 8.13 -2.39 -0.02 2.87 16 39 H 0.12 2.93 8.13 -2.39 -0.02 2.91 16 40 H 0.41 13.63 8.32 -92.71 -0.77 12.86 16 41 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -77.84 373.06 3.51 -74.33 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -0.19 Total: 19.80 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 4.31 Total: 14.23 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -2.31 Total: -86.92 kcal Atomic # 8 Polarization: -60.97 SS G_CDS: -1.06 Total: -62.03 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.73 Total: -3.38 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -77.84 3.51 -74.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870073238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.012 kcal (2) G-P(sol) polarization free energy of solvation -77.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds