Wall clock time and date at job start Tue Mar 31 2020 22:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47247 * 2 1 4 4 H 1.09001 * 109.46995 * 305.45681 * 3 2 1 5 5 N 1.46497 * 109.47340 * 65.45441 * 3 2 1 6 6 S 1.65601 * 119.99948 * 215.13712 * 5 3 2 7 7 O 1.42095 * 104.28016 * 307.31735 * 6 5 3 8 8 O 1.42102 * 104.27704 * 179.45744 * 6 5 3 9 9 C 1.81405 * 104.44980 * 63.39051 * 6 5 3 10 10 C 1.53001 * 109.47228 * 175.04254 * 9 6 5 11 11 C 1.53002 * 109.46830 * 179.97438 * 10 9 6 12 12 C 1.50700 * 109.46810 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00088 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99965 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00062 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00058 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47491 * 89.99472 * 16 14 12 18 18 H 1.48502 * 109.47156 * 210.00043 * 16 14 12 19 19 H 1.48508 * 109.47044 * 329.99629 * 16 14 12 20 20 C 1.50700 * 109.47336 * 185.45851 * 3 2 1 21 21 O 1.21256 * 120.00049 * 259.99742 * 20 3 2 22 22 C 1.47163 * 120.00309 * 79.99455 * 20 3 2 23 23 C 1.39860 * 120.17181 * 359.72999 * 22 20 3 24 24 C 1.37885 * 119.82326 * 179.74265 * 23 22 20 25 25 C 1.38399 * 120.17477 * 0.53328 * 24 23 22 26 26 C 1.38408 * 120.34909 * 359.71496 * 25 24 23 27 27 C 1.37884 * 120.16955 * 0.02821 * 26 25 24 28 28 H 1.08995 * 109.46629 * 64.60349 * 1 2 3 29 29 H 1.09000 * 109.47283 * 184.60283 * 1 2 3 30 30 H 1.09000 * 109.46919 * 304.60549 * 1 2 3 31 31 H 1.08999 * 109.47329 * 239.99765 * 2 1 3 32 32 H 1.09003 * 109.47132 * 119.99534 * 2 1 3 33 33 H 0.96995 * 120.00128 * 35.14209 * 5 3 2 34 34 H 1.09001 * 109.46902 * 295.04326 * 9 6 5 35 35 H 1.08998 * 109.47151 * 55.03683 * 9 6 5 36 36 H 1.08998 * 109.46461 * 299.99391 * 10 9 6 37 37 H 1.08995 * 109.46834 * 59.99898 * 10 9 6 38 38 H 1.08992 * 109.47073 * 299.99800 * 11 10 9 39 39 H 1.09005 * 109.46865 * 60.00228 * 11 10 9 40 40 H 0.96999 * 119.99839 * 179.97438 * 15 14 12 41 41 H 1.08000 * 120.08624 * 359.97438 * 23 22 20 42 42 H 1.07999 * 119.90827 * 180.27411 * 24 23 22 43 43 H 1.08000 * 119.82707 * 179.70368 * 25 24 23 44 44 H 1.07997 * 119.91080 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.08615 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5991 1.9837 -0.8371 5 7 1.6619 2.0942 1.2564 6 16 1.2620 3.7011 1.2679 7 8 2.3583 4.3397 0.6279 8 8 0.9465 3.9740 2.6263 9 6 -0.2261 3.8047 0.2356 10 6 -0.7702 5.2344 0.2671 11 6 -2.0249 5.3218 -0.6040 12 6 -2.5611 6.7298 -0.5725 13 1 -2.0572 7.4867 0.0103 14 6 -3.6945 7.0521 -1.2884 15 7 -4.1628 8.2807 -1.2605 16 14 -4.5658 5.7432 -2.2970 17 1 -5.5888 5.0703 -1.4569 18 1 -5.2250 6.3771 -3.4670 19 1 -3.5761 4.7416 -2.7690 20 6 3.5410 1.4446 -0.1352 21 8 4.2378 1.5950 0.8457 22 6 4.1610 1.2642 -1.4575 23 6 3.3608 1.0847 -2.5905 24 6 3.9493 0.9216 -3.8268 25 6 5.3281 0.9241 -3.9467 26 6 6.1269 1.0960 -2.8296 27 6 5.5535 1.2656 -1.5871 28 1 -0.3632 0.4407 -0.9283 29 1 -0.3634 -1.0243 0.0825 30 1 -0.3633 0.5836 0.8459 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6458 1.5845 2.0814 34 1 0.0237 3.5336 -0.7901 35 1 -0.9823 3.1196 0.6186 36 1 -1.0200 5.5054 1.2929 37 1 -0.0138 5.9194 -0.1158 38 1 -1.7746 5.0509 -1.6297 39 1 -2.7814 4.6366 -0.2214 40 1 -4.9600 8.5074 -1.7645 41 1 2.2848 1.0777 -2.4978 42 1 3.3326 0.7874 -4.7032 43 1 5.7831 0.7911 -4.9171 44 1 7.2021 1.0971 -2.9313 45 1 6.1781 1.3991 -0.7162 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872515862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:02 Heat of formation + Delta-G solvation = -97.474475 kcal Electronic energy + Delta-G solvation = -27400.432360 eV Core-core repulsion = 23509.755884 eV Total energy + Delta-G solvation = -3890.676476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.55424 -38.59858 -36.97927 -36.46254 -35.82234 -34.86026 -32.31279 -32.23100 -31.64698 -31.31394 -28.43663 -27.62695 -24.16686 -23.67725 -22.86388 -22.17886 -20.58955 -20.24571 -19.40158 -17.99147 -17.43124 -17.02298 -16.75763 -16.26200 -15.87878 -15.76284 -15.36138 -14.92550 -14.70051 -14.46956 -14.36805 -14.22995 -14.16072 -13.82444 -13.05534 -12.95978 -12.82654 -12.48089 -12.40674 -12.26665 -12.15942 -12.05986 -11.96079 -11.88295 -11.62274 -11.51582 -11.40015 -11.33003 -11.01892 -10.97971 -10.81044 -10.12552 -9.90606 -9.70684 -9.37210 -9.34326 -9.32234 -9.26636 -8.61235 -6.10541 -4.10045 0.29452 0.34628 1.00266 2.09575 2.66215 3.23972 3.31275 3.32881 3.44659 3.55157 3.83511 4.25555 4.28578 4.37653 4.38837 4.47986 4.56281 4.60513 4.68055 4.82754 4.92606 4.99363 5.01201 5.04071 5.13923 5.22901 5.26796 5.34271 5.47451 5.56661 5.60445 5.67662 5.71584 5.89827 5.93520 6.04319 6.07305 6.09947 6.21525 6.50236 6.62554 6.75211 7.08635 7.22943 7.24288 7.68385 8.45411 8.94111 9.50248 11.02829 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.003130 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.622831 B = 8944.879109 C = 9811.664907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.123 4.123 3 C 0.112 3.888 4 H 0.111 0.889 5 N -1.106 6.106 6 S 2.595 3.405 7 O -0.955 6.955 8 O -0.954 6.954 9 C -0.616 4.616 10 C -0.097 4.097 11 C -0.003 4.003 12 C -0.528 4.528 13 H 0.075 0.925 14 C 0.067 3.933 15 N -0.900 5.900 16 Si 0.881 3.119 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.266 1.266 20 C 0.385 3.615 21 O -0.430 6.430 22 C -0.164 4.164 23 C -0.078 4.078 24 C -0.130 4.130 25 C -0.090 4.090 26 C -0.132 4.132 27 C -0.061 4.061 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.420 0.580 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.020 0.980 39 H 0.016 0.984 40 H 0.264 0.736 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.084 -22.911 -4.159 28.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.162 4.162 3 C 0.002 3.998 4 H 0.129 0.871 5 N -0.863 5.863 6 S 2.690 3.310 7 O -0.944 6.944 8 O -0.944 6.944 9 C -0.748 4.748 10 C -0.137 4.137 11 C -0.042 4.042 12 C -0.566 4.566 13 H 0.093 0.907 14 C -0.134 4.134 15 N -0.538 5.538 16 Si 0.708 3.292 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.191 1.191 20 C 0.259 3.741 21 O -0.302 6.302 22 C -0.166 4.166 23 C -0.096 4.096 24 C -0.148 4.148 25 C -0.108 4.108 26 C -0.150 4.150 27 C -0.079 4.079 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.255 0.745 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.038 0.962 39 H 0.034 0.966 40 H 0.074 0.926 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 16.813 -21.932 -3.373 27.840 hybrid contribution -1.066 -1.054 -0.784 1.692 sum 15.747 -22.986 -4.157 28.171 Atomic orbital electron populations 1.21847 0.93944 1.02740 1.03033 1.21761 0.97588 0.92788 1.04018 1.21176 0.93459 0.97428 0.87710 0.87117 1.55672 1.84408 1.31330 1.14884 1.05549 0.77127 0.72489 0.75799 1.93603 1.49478 1.73253 1.78094 1.93597 1.85957 1.82398 1.32476 1.30646 1.19717 1.09062 1.15365 1.21321 1.00823 0.88477 1.03053 1.19522 0.91865 0.98183 0.94609 1.21134 1.11054 0.94150 1.30241 0.90721 1.25029 0.96871 0.95296 0.96225 1.69910 1.23356 1.18396 1.42176 0.86773 0.80040 0.82223 0.80188 1.20217 1.21266 1.19054 1.22914 0.91359 0.72111 0.87731 1.90509 1.65275 1.34183 1.40244 1.20492 0.94726 1.06485 0.94853 1.21523 1.00032 0.96065 0.91955 1.21176 0.95129 1.00953 0.97551 1.21457 0.93959 0.96523 0.98860 1.21182 1.00378 1.01040 0.92392 1.21445 0.93821 0.94386 0.98224 0.91879 0.91749 0.91745 0.89771 0.90341 0.74473 0.85544 0.84971 0.90768 0.91047 0.96180 0.96567 0.92601 0.84924 0.85126 0.85498 0.85330 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.86 37.16 0.37 -0.57 16 2 C -0.12 -0.76 5.36 -26.73 -0.14 -0.91 16 3 C 0.11 1.03 1.67 -69.09 -0.12 0.92 16 4 H 0.11 0.83 6.04 -51.93 -0.31 0.52 16 5 N -1.11 -12.00 4.33 -5.88 -0.03 -12.03 16 6 S 2.60 38.04 5.38 -107.50 -0.58 37.46 16 7 O -0.95 -17.16 17.85 -57.54 -1.03 -18.19 16 8 O -0.95 -16.95 18.08 -57.54 -1.04 -17.99 16 9 C -0.62 -8.44 5.86 37.16 0.22 -8.22 16 10 C -0.10 -1.85 5.16 -26.73 -0.14 -1.99 16 11 C 0.00 -0.07 4.04 -27.88 -0.11 -0.18 16 12 C -0.53 -14.83 9.66 -34.44 -0.33 -15.17 16 13 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 16 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 20 C 0.39 4.49 6.36 -30.69 -0.20 4.29 16 21 O -0.43 -6.34 16.55 5.58 0.09 -6.25 16 22 C -0.16 -1.66 5.87 -105.06 -0.62 -2.28 16 23 C -0.08 -0.61 8.82 -39.10 -0.35 -0.95 16 24 C -0.13 -0.89 10.03 -39.65 -0.40 -1.29 16 25 C -0.09 -0.60 10.04 -39.46 -0.40 -1.00 16 26 C -0.13 -1.00 10.03 -39.65 -0.40 -1.40 16 27 C -0.06 -0.59 9.60 -39.11 -0.38 -0.97 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 31 H 0.08 0.40 7.33 -51.93 -0.38 0.02 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.42 3.87 8.80 -34.47 -0.30 3.57 16 34 H 0.13 1.41 7.51 -51.92 -0.39 1.02 16 35 H 0.13 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 39 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 41 H 0.13 0.73 6.24 -52.49 -0.33 0.40 16 42 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 45 H 0.13 1.30 7.65 -52.48 -0.40 0.90 16 LS Contribution 387.50 15.07 5.84 5.84 Total: -1.00 -38.13 387.50 -10.39 -48.52 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.67 Total: 0.93 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -3.08 Total: -27.89 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.75 Total: -38.74 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -1.97 Total: -42.42 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Atomic # 16 Polarization: 38.04 SS G_CDS: -0.58 Total: 37.46 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.13 -10.39 -48.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872515862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.959 kcal (2) G-P(sol) polarization free energy of solvation -38.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds