Wall clock time and date at job start Tue Mar 31 2020 22:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47247 * 2 1 4 4 H 1.09001 * 109.46995 * 305.45681 * 3 2 1 5 5 N 1.46497 * 109.47340 * 65.45441 * 3 2 1 6 6 S 1.65601 * 119.99948 * 215.13712 * 5 3 2 7 7 O 1.42095 * 104.28016 * 307.31735 * 6 5 3 8 8 O 1.42102 * 104.27704 * 179.45744 * 6 5 3 9 9 C 1.81405 * 104.44980 * 63.39051 * 6 5 3 10 10 C 1.53001 * 109.47228 * 175.04254 * 9 6 5 11 11 C 1.53002 * 109.46830 * 179.97438 * 10 9 6 12 12 C 1.50700 * 109.46810 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00088 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99965 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00062 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00058 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47491 * 89.99472 * 16 14 12 18 18 H 1.48502 * 109.47156 * 210.00043 * 16 14 12 19 19 H 1.48508 * 109.47044 * 329.99629 * 16 14 12 20 20 C 1.50700 * 109.47336 * 185.45851 * 3 2 1 21 21 O 1.21256 * 120.00049 * 259.99742 * 20 3 2 22 22 C 1.47163 * 120.00309 * 79.99455 * 20 3 2 23 23 C 1.39860 * 120.17181 * 359.72999 * 22 20 3 24 24 C 1.37885 * 119.82326 * 179.74265 * 23 22 20 25 25 C 1.38399 * 120.17477 * 0.53328 * 24 23 22 26 26 C 1.38408 * 120.34909 * 359.71496 * 25 24 23 27 27 C 1.37884 * 120.16955 * 0.02821 * 26 25 24 28 28 H 1.08995 * 109.46629 * 64.60349 * 1 2 3 29 29 H 1.09000 * 109.47283 * 184.60283 * 1 2 3 30 30 H 1.09000 * 109.46919 * 304.60549 * 1 2 3 31 31 H 1.08999 * 109.47329 * 239.99765 * 2 1 3 32 32 H 1.09003 * 109.47132 * 119.99534 * 2 1 3 33 33 H 0.96995 * 120.00128 * 35.14209 * 5 3 2 34 34 H 1.09001 * 109.46902 * 295.04326 * 9 6 5 35 35 H 1.08998 * 109.47151 * 55.03683 * 9 6 5 36 36 H 1.08998 * 109.46461 * 299.99391 * 10 9 6 37 37 H 1.08995 * 109.46834 * 59.99898 * 10 9 6 38 38 H 1.08992 * 109.47073 * 299.99800 * 11 10 9 39 39 H 1.09005 * 109.46865 * 60.00228 * 11 10 9 40 40 H 0.96999 * 119.99839 * 179.97438 * 15 14 12 41 41 H 1.08000 * 120.08624 * 359.97438 * 23 22 20 42 42 H 1.07999 * 119.90827 * 180.27411 * 24 23 22 43 43 H 1.08000 * 119.82707 * 179.70368 * 25 24 23 44 44 H 1.07997 * 119.91080 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.08615 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5991 1.9837 -0.8371 5 7 1.6619 2.0942 1.2564 6 16 1.2620 3.7011 1.2679 7 8 2.3583 4.3397 0.6279 8 8 0.9465 3.9740 2.6263 9 6 -0.2261 3.8047 0.2356 10 6 -0.7702 5.2344 0.2671 11 6 -2.0249 5.3218 -0.6040 12 6 -2.5611 6.7298 -0.5725 13 1 -2.0572 7.4867 0.0103 14 6 -3.6945 7.0521 -1.2884 15 7 -4.1628 8.2807 -1.2605 16 14 -4.5658 5.7432 -2.2970 17 1 -5.5888 5.0703 -1.4569 18 1 -5.2250 6.3771 -3.4670 19 1 -3.5761 4.7416 -2.7690 20 6 3.5410 1.4446 -0.1352 21 8 4.2378 1.5950 0.8457 22 6 4.1610 1.2642 -1.4575 23 6 3.3608 1.0847 -2.5905 24 6 3.9493 0.9216 -3.8268 25 6 5.3281 0.9241 -3.9467 26 6 6.1269 1.0960 -2.8296 27 6 5.5535 1.2656 -1.5871 28 1 -0.3632 0.4407 -0.9283 29 1 -0.3634 -1.0243 0.0825 30 1 -0.3633 0.5836 0.8459 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6458 1.5845 2.0814 34 1 0.0237 3.5336 -0.7901 35 1 -0.9823 3.1196 0.6186 36 1 -1.0200 5.5054 1.2929 37 1 -0.0138 5.9194 -0.1158 38 1 -1.7746 5.0509 -1.6297 39 1 -2.7814 4.6366 -0.2214 40 1 -4.9600 8.5074 -1.7645 41 1 2.2848 1.0777 -2.4978 42 1 3.3326 0.7874 -4.7032 43 1 5.7831 0.7911 -4.9171 44 1 7.2021 1.0971 -2.9313 45 1 6.1781 1.3991 -0.7162 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872515862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:01 Heat of formation + Delta-G solvation = -125.101219 kcal Electronic energy + Delta-G solvation = -27401.630346 eV Core-core repulsion = 23509.755884 eV Total energy + Delta-G solvation = -3891.874462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.30420 -39.24965 -38.25310 -37.25563 -37.09981 -36.50530 -34.24371 -32.99248 -32.22332 -31.87780 -30.17016 -28.29005 -25.43255 -24.75781 -23.41814 -22.74264 -22.25475 -20.99630 -20.48419 -18.97110 -18.89946 -18.28744 -17.79934 -17.26971 -16.82930 -16.65899 -16.25487 -16.16658 -15.75305 -15.66085 -15.33226 -14.99874 -14.92948 -14.82037 -14.34290 -14.06982 -13.73109 -13.56357 -13.46585 -13.28713 -13.26164 -13.20734 -13.18615 -12.93020 -12.67071 -12.59452 -12.56357 -12.11070 -11.94681 -11.82722 -11.78407 -11.73115 -11.61363 -11.38615 -11.16068 -10.75077 -10.20252 -9.93552 -9.93238 -8.27343 -6.33941 -0.85450 -0.33517 0.43856 1.36971 1.40067 1.43302 1.54797 1.65674 2.39616 2.68751 2.81696 2.86273 3.08166 3.18858 3.58946 3.69855 3.80387 3.85890 3.91750 4.01529 4.08275 4.20280 4.28911 4.34359 4.48085 4.51377 4.56929 4.60878 4.69294 4.82985 4.87678 4.93198 4.96838 5.07848 5.18672 5.26815 5.35486 5.36557 5.47830 5.49024 5.51865 5.53687 5.64999 5.95118 5.97442 6.27470 6.44766 6.74910 7.30835 8.89935 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.003130 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.622831 B = 8944.879109 C = 9811.664907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.115 4.115 3 C 0.103 3.897 4 H 0.135 0.865 5 N -1.095 6.095 6 S 2.605 3.395 7 O -0.995 6.995 8 O -0.994 6.994 9 C -0.601 4.601 10 C -0.104 4.104 11 C -0.002 4.002 12 C -0.546 4.546 13 H 0.025 0.975 14 C -0.002 4.002 15 N -0.956 5.956 16 Si 0.958 3.042 17 H -0.265 1.265 18 H -0.288 1.288 19 H -0.230 1.230 20 C 0.380 3.620 21 O -0.479 6.479 22 C -0.191 4.191 23 C -0.077 4.077 24 C -0.132 4.132 25 C -0.087 4.087 26 C -0.139 4.139 27 C -0.086 4.086 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.428 0.572 34 H 0.164 0.836 35 H 0.168 0.832 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.039 0.961 39 H 0.035 0.965 40 H 0.266 0.734 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.155 0.845 44 H 0.145 0.855 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.976 -26.690 -7.259 31.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.153 4.153 3 C -0.005 4.005 4 H 0.153 0.847 5 N -0.854 5.854 6 S 2.703 3.297 7 O -0.985 6.985 8 O -0.984 6.984 9 C -0.734 4.734 10 C -0.144 4.144 11 C -0.041 4.041 12 C -0.584 4.584 13 H 0.044 0.956 14 C -0.198 4.198 15 N -0.596 5.596 16 Si 0.780 3.220 17 H -0.190 1.190 18 H -0.214 1.214 19 H -0.152 1.152 20 C 0.257 3.743 21 O -0.355 6.355 22 C -0.193 4.193 23 C -0.095 4.095 24 C -0.150 4.150 25 C -0.105 4.105 26 C -0.157 4.157 27 C -0.104 4.104 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.264 0.736 34 H 0.182 0.818 35 H 0.185 0.815 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.177 0.823 42 H 0.178 0.822 43 H 0.173 0.827 44 H 0.163 0.837 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.738 -25.729 -6.455 30.844 hybrid contribution -0.634 0.182 0.162 0.679 sum 15.104 -25.548 -6.293 30.338 Atomic orbital electron populations 1.21916 0.93082 1.03499 1.03479 1.21774 0.98137 0.90481 1.04956 1.21571 0.92048 0.99600 0.87311 0.84741 1.55270 1.84032 1.29855 1.16267 1.04932 0.77004 0.73002 0.74812 1.93556 1.51518 1.74888 1.78499 1.93540 1.86435 1.83565 1.34855 1.30478 1.19220 1.06113 1.17541 1.21190 0.99547 0.92015 1.01630 1.19495 0.93451 0.94748 0.96394 1.21583 1.11138 0.96288 1.29390 0.95635 1.26179 0.97846 0.98051 0.97773 1.70100 1.24297 1.21388 1.43831 0.85558 0.79248 0.79261 0.77977 1.19026 1.21431 1.15242 1.23522 0.92541 0.70380 0.87842 1.90489 1.66451 1.36890 1.41703 1.20572 0.95110 1.08550 0.95060 1.21854 1.01241 0.95007 0.91403 1.21598 0.95532 0.99749 0.98110 1.21867 0.94235 0.94833 0.99566 1.21428 1.01571 1.00729 0.91935 1.21533 0.94172 0.95926 0.98800 0.90611 0.90791 0.92264 0.87743 0.90625 0.73552 0.81801 0.81461 0.92103 0.92187 0.94312 0.94650 0.92489 0.82253 0.82234 0.82731 0.83716 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.86 71.98 0.71 -0.50 16 2 C -0.11 -1.06 5.36 30.59 0.16 -0.89 16 3 C 0.10 1.67 1.67 44.24 0.07 1.74 16 4 H 0.14 1.48 6.04 -2.39 -0.01 1.47 16 5 N -1.09 -22.26 4.33 -172.53 -0.75 -23.01 16 6 S 2.61 74.48 5.38 -56.49 -0.30 74.18 16 7 O -0.99 -36.15 17.85 -127.65 -2.28 -38.43 16 8 O -0.99 -35.75 18.08 -127.65 -2.31 -38.06 16 9 C -0.60 -14.41 5.86 71.98 0.42 -13.99 16 10 C -0.10 -3.85 5.16 30.60 0.16 -3.69 16 11 C 0.00 -0.10 4.04 29.85 0.12 0.02 16 12 C -0.55 -31.09 9.66 25.60 0.25 -30.84 16 13 H 0.03 1.63 7.99 -2.91 -0.02 1.61 16 14 C 0.00 -0.12 5.47 84.65 0.46 0.34 16 15 N -0.96 -59.93 13.96 21.45 0.30 -59.63 16 16 Si 0.96 41.55 27.47 68.60 1.88 43.43 16 17 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 18 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.23 -8.59 6.54 99.48 0.65 -7.94 16 20 C 0.38 8.73 6.36 28.03 0.18 8.91 16 21 O -0.48 -14.87 16.55 -2.95 -0.05 -14.91 16 22 C -0.19 -3.73 5.87 -20.15 -0.12 -3.85 16 23 C -0.08 -0.97 8.82 22.58 0.20 -0.77 16 24 C -0.13 -1.31 10.03 22.22 0.22 -1.09 16 25 C -0.09 -0.91 10.04 22.35 0.22 -0.68 16 26 C -0.14 -1.95 10.03 22.23 0.22 -1.73 16 27 C -0.09 -1.71 9.60 22.58 0.22 -1.49 16 28 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.51 7.65 -2.39 -0.02 0.49 16 31 H 0.10 0.58 7.33 -2.39 -0.02 0.56 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.43 7.53 8.80 -96.75 -0.85 6.68 16 34 H 0.16 2.74 7.51 -2.39 -0.02 2.73 16 35 H 0.17 2.92 8.14 -2.39 -0.02 2.90 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 39 H 0.04 1.39 7.57 -2.38 -0.02 1.38 16 40 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.16 0.98 6.24 -2.91 -0.02 0.97 16 42 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 43 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 44 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 45 H 0.12 2.56 7.65 -2.91 -0.02 2.53 16 Total: -1.00 -88.66 387.50 0.09 -88.57 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.09 Total: 16.39 kcal Atomic # 6 Polarization: -52.02 SS G_CDS: 3.50 Total: -48.52 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -0.45 Total: -82.64 kcal Atomic # 8 Polarization: -86.77 SS G_CDS: -4.63 Total: -91.40 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.88 Total: 43.43 kcal Atomic # 16 Polarization: 74.48 SS G_CDS: -0.30 Total: 74.18 kcal Total: -88.66 0.09 -88.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872515862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.536 kcal (2) G-P(sol) polarization free energy of solvation -88.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds