Wall clock time and date at job start Tue Mar 31 2020 23:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00009 * 2 1 4 4 C 1.52999 * 109.54483 * 296.73361 * 3 2 1 5 5 H 1.09002 * 109.47533 * 190.03891 * 4 3 2 6 6 C 1.53007 * 109.47129 * 310.03903 * 4 3 2 7 7 N 1.46503 * 109.47012 * 70.03605 * 4 3 2 8 8 C 1.34783 * 119.99887 * 170.02823 * 7 4 3 9 9 O 1.21762 * 120.00096 * 0.02562 * 8 7 4 10 10 C 1.46232 * 120.00171 * 180.02562 * 8 7 4 11 11 S 1.75673 * 125.22671 * 0.02562 * 10 8 7 12 12 C 1.75469 * 92.09168 * 179.97438 * 11 10 8 13 13 C 1.32768 * 111.36155 * 359.71174 * 12 11 10 14 14 C 1.39545 * 125.23093 * 180.02562 * 10 8 7 15 15 C 1.40534 * 123.71490 * 0.02562 * 14 10 8 16 16 H 1.08007 * 119.99608 * 342.14297 * 15 14 10 17 17 C 1.40307 * 120.00138 * 162.14502 * 15 14 10 18 18 N 1.30641 * 120.00024 * 334.20399 * 17 15 14 19 19 Si 1.86803 * 119.99934 * 154.21007 * 17 15 14 20 20 H 1.48499 * 109.46851 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.46981 * 299.99346 * 19 17 15 22 22 H 1.48498 * 109.47588 * 59.99695 * 19 17 15 23 23 C 1.53181 * 109.54249 * 56.90663 * 3 2 1 24 24 C 1.53106 * 109.15543 * 63.06719 * 23 3 2 25 25 O 1.42907 * 109.48907 * 57.47231 * 24 23 3 26 26 C 1.42904 * 114.09648 * 298.89191 * 25 24 23 27 27 C 1.53092 * 109.41797 * 61.15423 * 26 25 24 28 28 H 1.09000 * 109.47045 * 188.02419 * 1 2 3 29 29 H 1.08992 * 109.47125 * 308.02774 * 1 2 3 30 30 H 1.09001 * 109.46816 * 68.03163 * 1 2 3 31 31 H 1.09002 * 109.46923 * 59.99614 * 6 4 3 32 32 H 1.08992 * 109.46989 * 179.97438 * 6 4 3 33 33 H 1.08996 * 109.46888 * 299.99984 * 6 4 3 34 34 H 0.96997 * 120.00225 * 350.02784 * 7 4 3 35 35 H 1.07993 * 124.31918 * 180.02562 * 12 11 10 36 36 H 1.08000 * 122.78590 * 180.27949 * 13 12 11 37 37 H 0.96994 * 119.99431 * 355.74379 * 18 17 15 38 38 H 1.09001 * 109.52326 * 182.87860 * 23 3 2 39 39 H 1.08992 * 109.52538 * 303.07393 * 23 3 2 40 40 H 1.09002 * 109.40616 * 297.49218 * 24 23 3 41 41 H 1.08998 * 109.49503 * 177.50952 * 24 23 3 42 42 H 1.09001 * 109.48242 * 301.17387 * 26 25 24 43 43 H 1.08994 * 109.49183 * 181.14352 * 26 25 24 44 44 H 1.08996 * 109.52371 * 182.48758 * 27 26 25 45 45 H 1.09003 * 109.52243 * 62.29960 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6259 2.0368 -1.2877 5 1 2.2078 2.9547 -1.3718 6 6 1.9156 1.1373 -2.4911 7 7 0.1984 2.3647 -1.2556 8 6 -0.3259 3.1845 -2.1882 9 8 0.3868 3.6522 -3.0577 10 6 -1.7506 3.5123 -2.1559 11 16 -2.9005 2.9178 -0.9682 12 6 -4.2232 3.7970 -1.7141 13 6 -3.8108 4.4855 -2.7717 14 6 -2.4058 4.3454 -3.0636 15 6 -1.7654 4.9827 -4.1401 16 1 -0.6901 5.0842 -4.1452 17 6 -2.5228 5.4871 -5.2080 18 7 -3.6893 4.9676 -5.4842 19 14 -1.8633 6.9012 -6.2350 20 1 -2.8464 7.2447 -7.2936 21 1 -1.6397 8.0831 -5.3642 22 1 -0.5794 6.4997 -6.8639 23 6 1.4986 2.0941 1.2094 24 6 1.9573 1.3981 2.4937 25 8 3.3825 1.2934 2.4963 26 6 3.9131 0.5254 1.4143 27 6 3.5350 1.1875 0.0867 28 1 -0.3633 -1.0176 0.1435 29 1 -0.3633 0.6330 0.8094 30 1 -0.3633 0.3845 -0.9531 31 1 1.3338 0.2194 -2.4070 32 1 1.6414 1.6582 -3.4084 33 1 2.9776 0.8933 -2.5149 34 1 -0.3694 1.9919 -0.5632 35 1 -5.2418 3.7840 -1.3555 36 1 -4.4735 5.0965 -3.3665 37 1 -4.0046 4.1941 -4.9913 38 1 1.9019 3.1064 1.1813 39 1 0.4097 2.1340 1.1841 40 1 1.5195 0.4010 2.5414 41 1 1.6338 1.9788 3.3575 42 1 3.5009 -0.4831 1.4478 43 1 4.9986 0.4775 1.5003 44 1 3.9009 0.5797 -0.7407 45 1 3.9807 2.1809 0.0351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875796959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:39 Heat of formation + Delta-G solvation = -102.313139 kcal Electronic energy + Delta-G solvation = -28722.722495 eV Core-core repulsion = 24831.836198 eV Total energy + Delta-G solvation = -3890.886296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.78367 -38.42427 -37.33859 -36.38871 -34.18946 -33.11902 -32.51360 -31.38282 -29.96654 -28.79141 -26.90767 -25.95338 -24.99420 -23.55118 -22.71889 -21.54998 -20.20792 -19.85067 -19.11333 -17.98482 -16.66713 -16.35728 -16.09253 -15.93379 -15.65474 -15.47038 -14.76311 -14.55104 -14.23693 -14.16121 -13.91593 -13.64695 -13.23847 -13.08756 -12.91011 -12.72072 -12.50061 -12.30607 -12.19124 -11.95552 -11.64058 -11.55444 -11.41700 -11.32557 -11.11782 -11.02238 -10.73285 -10.58088 -10.49282 -10.42206 -10.19033 -9.84769 -9.80749 -9.33463 -9.16832 -8.46629 -8.29267 -7.81969 -7.46327 -7.42417 -4.65128 1.99606 2.88335 2.99469 3.06060 3.27532 3.50914 3.62328 3.65130 3.76712 3.84285 3.95425 4.34746 4.55861 4.61511 4.67165 4.87399 5.05184 5.12651 5.20256 5.28367 5.38551 5.45432 5.48057 5.54665 5.61306 5.62592 5.74024 5.77370 5.80998 5.86707 5.93877 6.01422 6.07874 6.25218 6.41136 6.63602 6.73028 6.91836 7.06983 7.12274 7.14719 7.17983 7.28980 7.69620 7.88034 8.35447 8.41765 8.70490 9.53161 9.64872 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017220 B = 0.003512 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.669549 B = 7971.233753 C = 8884.648527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.370 6.370 3 C 0.112 3.888 4 C 0.134 3.866 5 H 0.079 0.921 6 C -0.157 4.157 7 N -0.753 5.753 8 C 0.599 3.401 9 O -0.563 6.563 10 C -0.446 4.446 11 S -0.048 6.048 12 C -0.183 4.183 13 C -0.144 4.144 14 C 0.110 3.890 15 C -0.422 4.422 16 H 0.115 0.885 17 C 0.030 3.970 18 N -0.768 5.768 19 Si 1.073 2.927 20 H -0.271 1.271 21 H -0.270 1.270 22 H -0.268 1.268 23 C -0.184 4.184 24 C 0.067 3.933 25 O -0.384 6.384 26 C 0.065 3.935 27 C -0.138 4.138 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.389 0.611 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.302 0.698 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.665 -6.503 9.732 13.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.289 6.289 3 C 0.072 3.928 4 C 0.029 3.971 5 H 0.097 0.903 6 C -0.216 4.216 7 N -0.411 5.411 8 C 0.397 3.603 9 O -0.447 6.447 10 C -0.565 4.565 11 S 0.207 5.793 12 C -0.317 4.317 13 C -0.177 4.177 14 C 0.100 3.900 15 C -0.452 4.452 16 H 0.133 0.867 17 C -0.196 4.196 18 N -0.390 5.390 19 Si 0.894 3.106 20 H -0.196 1.196 21 H -0.195 1.195 22 H -0.193 1.193 23 C -0.221 4.221 24 C -0.010 4.010 25 O -0.303 6.303 26 C -0.012 4.012 27 C -0.176 4.176 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.227 0.773 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.105 0.895 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.065 -6.231 9.229 13.188 hybrid contribution -0.830 -0.257 0.272 0.911 sum 6.235 -6.488 9.501 13.086 Atomic orbital electron populations 1.23227 0.81440 1.02819 1.01710 1.87899 1.19588 1.26559 1.94874 1.21748 0.94039 0.83597 0.93456 1.21231 0.83848 0.97913 0.94124 0.90322 1.22096 1.00739 0.99705 0.99034 1.46496 1.08427 1.52790 1.33414 1.16792 0.86144 0.77077 0.80267 1.90628 1.61323 1.55248 1.37491 1.22272 0.95221 1.25944 1.13031 1.82644 1.01744 1.57423 1.37453 1.24908 1.01022 1.04244 1.01523 1.21630 0.96640 1.01540 0.97876 1.17854 0.89223 0.89593 0.93307 1.21120 0.99393 1.23887 1.00777 0.86696 1.27634 0.93218 1.01139 0.97562 1.70470 1.17089 1.17660 1.33829 0.83516 0.76829 0.74239 0.75991 1.19577 1.19481 1.19321 1.22793 1.02497 1.01180 0.95679 1.22488 0.81329 0.99991 0.97153 1.87901 1.20688 1.73630 1.48078 1.22524 0.98838 0.94433 0.85403 1.22177 0.92611 1.03195 0.99569 0.89581 0.93615 0.91586 0.92422 0.90988 0.92602 0.77257 0.84147 0.85044 0.88407 0.89621 0.90136 0.92739 0.88916 0.92315 0.88898 0.89506 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 8.92 101.05 0.90 0.96 16 2 O -0.37 -4.94 8.34 -35.23 -0.29 -5.24 16 3 C 0.11 1.47 0.37 -90.44 -0.03 1.44 16 4 C 0.13 2.20 1.76 -67.93 -0.12 2.08 16 5 H 0.08 1.39 8.01 -51.93 -0.42 0.97 16 6 C -0.16 -2.57 8.77 37.16 0.33 -2.25 16 7 N -0.75 -14.22 3.52 -55.24 -0.19 -14.42 16 8 C 0.60 14.35 7.52 -13.05 -0.10 14.25 16 9 O -0.56 -15.05 13.15 5.13 0.07 -14.99 16 10 C -0.45 -11.00 6.51 -35.89 -0.23 -11.23 16 11 S -0.05 -0.97 22.25 -107.50 -2.39 -3.37 16 12 C -0.18 -3.76 11.07 28.86 0.32 -3.44 16 13 C -0.14 -3.32 8.26 -39.12 -0.32 -3.65 16 14 C 0.11 2.86 5.50 -106.21 -0.58 2.28 16 15 C -0.42 -11.18 8.55 -37.94 -0.32 -11.51 16 16 H 0.12 3.24 5.93 -52.48 -0.31 2.93 16 17 C 0.03 0.72 5.17 -17.28 -0.09 0.64 16 18 N -0.77 -18.86 12.41 55.57 0.69 -18.17 16 19 Si 1.07 20.83 30.01 -169.99 -5.10 15.73 16 20 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 21 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 22 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 23 C -0.18 -2.32 4.24 -26.58 -0.11 -2.44 16 24 C 0.07 0.76 6.69 37.21 0.25 1.00 16 25 O -0.38 -4.71 10.77 -35.23 -0.38 -5.08 16 26 C 0.06 0.68 6.70 37.21 0.25 0.93 16 27 C -0.14 -1.54 4.90 -26.59 -0.13 -1.67 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.55 5.57 -51.93 -0.29 0.26 16 30 H 0.07 1.01 5.24 -51.93 -0.27 0.74 16 31 H 0.06 0.94 6.76 -51.93 -0.35 0.58 16 32 H 0.07 1.40 6.92 -51.93 -0.36 1.05 16 33 H 0.06 0.76 6.84 -51.93 -0.36 0.41 16 34 H 0.39 6.72 3.25 -40.82 -0.13 6.58 16 35 H 0.14 2.40 8.06 -52.49 -0.42 1.98 16 36 H 0.13 2.99 6.53 -52.49 -0.34 2.65 16 37 H 0.30 7.51 6.27 -40.82 -0.26 7.25 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.06 5.02 -51.93 -0.26 0.79 16 40 H 0.05 0.60 7.82 -51.93 -0.41 0.19 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.09 0.91 6.91 -51.93 -0.36 0.55 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -29.00 354.34 -8.12 -37.11 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -5.85 Total: 15.69 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 0.00 Total: -12.62 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.50 Total: -32.58 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.61 Total: -25.31 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.10 Total: 15.73 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -2.39 Total: -3.37 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.00 -8.12 -37.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875796959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.202 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds