Wall clock time and date at job start Tue Mar 31 2020 23:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00009 * 2 1 4 4 C 1.52999 * 109.54483 * 296.73361 * 3 2 1 5 5 H 1.09002 * 109.47533 * 190.03891 * 4 3 2 6 6 C 1.53007 * 109.47129 * 310.03903 * 4 3 2 7 7 N 1.46503 * 109.47012 * 70.03605 * 4 3 2 8 8 C 1.34783 * 119.99887 * 170.02823 * 7 4 3 9 9 O 1.21762 * 120.00096 * 0.02562 * 8 7 4 10 10 C 1.46232 * 120.00171 * 180.02562 * 8 7 4 11 11 S 1.75673 * 125.22671 * 0.02562 * 10 8 7 12 12 C 1.75469 * 92.09168 * 179.97438 * 11 10 8 13 13 C 1.32768 * 111.36155 * 359.71174 * 12 11 10 14 14 C 1.39545 * 125.23093 * 180.02562 * 10 8 7 15 15 C 1.40534 * 123.71490 * 0.02562 * 14 10 8 16 16 H 1.08007 * 119.99608 * 342.14297 * 15 14 10 17 17 C 1.40307 * 120.00138 * 162.14502 * 15 14 10 18 18 N 1.30641 * 120.00024 * 334.20399 * 17 15 14 19 19 Si 1.86803 * 119.99934 * 154.21007 * 17 15 14 20 20 H 1.48499 * 109.46851 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.46981 * 299.99346 * 19 17 15 22 22 H 1.48498 * 109.47588 * 59.99695 * 19 17 15 23 23 C 1.53181 * 109.54249 * 56.90663 * 3 2 1 24 24 C 1.53106 * 109.15543 * 63.06719 * 23 3 2 25 25 O 1.42907 * 109.48907 * 57.47231 * 24 23 3 26 26 C 1.42904 * 114.09648 * 298.89191 * 25 24 23 27 27 C 1.53092 * 109.41797 * 61.15423 * 26 25 24 28 28 H 1.09000 * 109.47045 * 188.02419 * 1 2 3 29 29 H 1.08992 * 109.47125 * 308.02774 * 1 2 3 30 30 H 1.09001 * 109.46816 * 68.03163 * 1 2 3 31 31 H 1.09002 * 109.46923 * 59.99614 * 6 4 3 32 32 H 1.08992 * 109.46989 * 179.97438 * 6 4 3 33 33 H 1.08996 * 109.46888 * 299.99984 * 6 4 3 34 34 H 0.96997 * 120.00225 * 350.02784 * 7 4 3 35 35 H 1.07993 * 124.31918 * 180.02562 * 12 11 10 36 36 H 1.08000 * 122.78590 * 180.27949 * 13 12 11 37 37 H 0.96994 * 119.99431 * 355.74379 * 18 17 15 38 38 H 1.09001 * 109.52326 * 182.87860 * 23 3 2 39 39 H 1.08992 * 109.52538 * 303.07393 * 23 3 2 40 40 H 1.09002 * 109.40616 * 297.49218 * 24 23 3 41 41 H 1.08998 * 109.49503 * 177.50952 * 24 23 3 42 42 H 1.09001 * 109.48242 * 301.17387 * 26 25 24 43 43 H 1.08994 * 109.49183 * 181.14352 * 26 25 24 44 44 H 1.08996 * 109.52371 * 182.48758 * 27 26 25 45 45 H 1.09003 * 109.52243 * 62.29960 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6259 2.0368 -1.2877 5 1 2.2078 2.9547 -1.3718 6 6 1.9156 1.1373 -2.4911 7 7 0.1984 2.3647 -1.2556 8 6 -0.3259 3.1845 -2.1882 9 8 0.3868 3.6522 -3.0577 10 6 -1.7506 3.5123 -2.1559 11 16 -2.9005 2.9178 -0.9682 12 6 -4.2232 3.7970 -1.7141 13 6 -3.8108 4.4855 -2.7717 14 6 -2.4058 4.3454 -3.0636 15 6 -1.7654 4.9827 -4.1401 16 1 -0.6901 5.0842 -4.1452 17 6 -2.5228 5.4871 -5.2080 18 7 -3.6893 4.9676 -5.4842 19 14 -1.8633 6.9012 -6.2350 20 1 -2.8464 7.2447 -7.2936 21 1 -1.6397 8.0831 -5.3642 22 1 -0.5794 6.4997 -6.8639 23 6 1.4986 2.0941 1.2094 24 6 1.9573 1.3981 2.4937 25 8 3.3825 1.2934 2.4963 26 6 3.9131 0.5254 1.4143 27 6 3.5350 1.1875 0.0867 28 1 -0.3633 -1.0176 0.1435 29 1 -0.3633 0.6330 0.8094 30 1 -0.3633 0.3845 -0.9531 31 1 1.3338 0.2194 -2.4070 32 1 1.6414 1.6582 -3.4084 33 1 2.9776 0.8933 -2.5149 34 1 -0.3694 1.9919 -0.5632 35 1 -5.2418 3.7840 -1.3555 36 1 -4.4735 5.0965 -3.3665 37 1 -4.0046 4.1941 -4.9913 38 1 1.9019 3.1064 1.1813 39 1 0.4097 2.1340 1.1841 40 1 1.5195 0.4010 2.5414 41 1 1.6338 1.9788 3.3575 42 1 3.5009 -0.4831 1.4478 43 1 4.9986 0.4775 1.5003 44 1 3.9009 0.5797 -0.7407 45 1 3.9807 2.1809 0.0351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875796959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:38 Heat of formation + Delta-G solvation = -120.310203 kcal Electronic energy + Delta-G solvation = -28723.502906 eV Core-core repulsion = 24831.836198 eV Total energy + Delta-G solvation = -3891.666708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.94710 -40.00330 -38.61410 -38.05325 -35.64015 -34.93976 -33.76717 -32.35750 -31.42879 -30.47560 -28.04645 -27.63933 -26.22895 -24.56367 -24.33336 -22.93750 -21.66288 -21.17341 -20.91293 -19.56981 -18.26873 -17.60183 -17.31495 -17.01874 -16.72447 -16.66649 -16.11221 -16.06052 -15.70061 -15.56277 -15.41432 -15.30198 -14.91333 -14.43383 -14.13080 -13.84283 -13.79254 -13.75285 -13.60023 -13.40711 -13.22999 -12.83141 -12.79204 -12.71280 -12.53466 -12.30924 -12.13796 -12.05949 -11.92173 -11.69802 -11.55716 -11.37241 -10.98509 -10.79694 -10.48722 -10.24787 -9.97521 -9.67769 -9.33479 -9.17590 -6.56750 0.18552 1.17972 1.34854 1.45055 1.65697 1.77186 1.88883 2.21652 2.41630 2.47307 2.61486 2.93257 3.13774 3.41833 3.54741 3.66189 3.95315 4.14640 4.16817 4.20446 4.24381 4.27597 4.38838 4.41335 4.50794 4.56376 4.60552 4.64308 4.72777 4.76136 4.80559 4.85219 4.96261 5.00558 5.02412 5.14357 5.16889 5.22945 5.30804 5.32925 5.66415 5.83653 5.91007 6.05219 6.21935 6.46485 6.57850 6.87984 7.68281 7.75154 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017220 B = 0.003512 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.669549 B = 7971.233753 C = 8884.648527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.368 6.368 3 C 0.119 3.881 4 C 0.130 3.870 5 H 0.062 0.938 6 C -0.149 4.149 7 N -0.736 5.736 8 C 0.589 3.411 9 O -0.601 6.601 10 C -0.482 4.482 11 S 0.018 5.982 12 C -0.166 4.166 13 C -0.174 4.174 14 C 0.087 3.913 15 C -0.464 4.464 16 H 0.086 0.914 17 C 0.005 3.995 18 N -0.777 5.777 19 Si 1.117 2.883 20 H -0.256 1.256 21 H -0.259 1.259 22 H -0.268 1.268 23 C -0.183 4.183 24 C 0.071 3.929 25 O -0.397 6.397 26 C 0.066 3.934 27 C -0.137 4.137 28 H 0.111 0.889 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.032 0.968 33 H 0.085 0.915 34 H 0.399 0.601 35 H 0.184 0.816 36 H 0.130 0.870 37 H 0.292 0.708 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.108 0.892 42 H 0.061 0.939 43 H 0.116 0.884 44 H 0.097 0.903 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.621 -7.651 11.798 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.287 6.287 3 C 0.078 3.922 4 C 0.025 3.975 5 H 0.081 0.919 6 C -0.207 4.207 7 N -0.393 5.393 8 C 0.387 3.613 9 O -0.487 6.487 10 C -0.600 4.600 11 S 0.274 5.726 12 C -0.300 4.300 13 C -0.207 4.207 14 C 0.077 3.923 15 C -0.494 4.494 16 H 0.104 0.896 17 C -0.216 4.216 18 N -0.399 5.399 19 Si 0.933 3.067 20 H -0.180 1.180 21 H -0.184 1.184 22 H -0.193 1.193 23 C -0.221 4.221 24 C -0.006 4.006 25 O -0.316 6.316 26 C -0.011 4.011 27 C -0.175 4.175 28 H 0.129 0.871 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.239 0.761 35 H 0.201 0.799 36 H 0.148 0.852 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.126 0.874 42 H 0.079 0.921 43 H 0.134 0.866 44 H 0.115 0.885 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.018 -7.429 11.352 15.274 hybrid contribution -0.790 -0.057 -0.218 0.822 sum 6.227 -7.486 11.134 14.791 Atomic orbital electron populations 1.23278 0.81221 1.04487 1.00472 1.87915 1.19842 1.26256 1.94679 1.21714 0.95543 0.83313 0.91585 1.21445 0.81941 0.97753 0.96368 0.91946 1.22000 1.02622 0.99015 0.97113 1.46329 1.09751 1.51096 1.32128 1.17026 0.86214 0.77466 0.80644 1.90600 1.62243 1.56721 1.39137 1.22832 0.96761 1.25913 1.14517 1.82241 0.99553 1.55920 1.34843 1.25463 1.03002 1.01767 0.99776 1.21503 0.95519 1.03904 0.99769 1.18323 0.91026 0.89496 0.93459 1.21085 0.98283 1.27141 1.02852 0.89611 1.28784 0.92811 1.02413 0.97622 1.70553 1.17572 1.17719 1.34031 0.83000 0.76522 0.71987 0.75193 1.17984 1.18368 1.19254 1.22780 1.02056 1.00845 0.96392 1.22530 0.81103 1.00363 0.96600 1.87896 1.21034 1.73966 1.48670 1.22648 1.00202 0.94026 0.84199 1.22233 0.90754 1.03754 1.00782 0.87111 0.92647 0.94328 0.92273 0.94871 0.89676 0.76132 0.79900 0.85233 0.89478 0.90565 0.90710 0.92043 0.87427 0.92067 0.86613 0.88505 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 8.92 113.37 1.01 1.05 16 2 O -0.37 -9.03 8.34 -148.98 -1.24 -10.27 16 3 C 0.12 2.96 0.37 -10.68 0.00 2.96 16 4 C 0.13 4.28 1.76 44.99 0.08 4.36 16 5 H 0.06 2.28 8.01 -2.39 -0.02 2.26 16 6 C -0.15 -4.94 8.77 71.98 0.63 -4.31 16 7 N -0.74 -28.20 3.52 -446.87 -1.57 -29.77 16 8 C 0.59 29.32 7.52 86.32 0.65 29.97 16 9 O -0.60 -34.11 13.15 -4.55 -0.06 -34.17 16 10 C -0.48 -24.26 6.51 24.66 0.16 -24.10 16 11 S 0.02 0.72 22.25 -56.49 -1.26 -0.54 16 12 C -0.17 -6.49 11.07 66.64 0.74 -5.75 16 13 C -0.17 -8.09 8.26 22.60 0.19 -7.90 16 14 C 0.09 4.68 5.50 -20.89 -0.11 4.57 16 15 C -0.46 -25.93 8.55 23.33 0.20 -25.73 16 16 H 0.09 5.20 5.93 -2.91 -0.02 5.19 16 17 C 0.00 0.25 5.17 85.37 0.44 0.69 16 18 N -0.78 -39.16 12.41 21.89 0.27 -38.89 16 19 Si 1.12 43.04 30.01 68.60 2.06 45.10 16 20 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 21 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 22 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 23 C -0.18 -4.35 4.24 30.69 0.13 -4.22 16 24 C 0.07 1.41 6.69 72.02 0.48 1.89 16 25 O -0.40 -8.66 10.77 -148.98 -1.60 -10.27 16 26 C 0.07 1.18 6.70 72.01 0.48 1.67 16 27 C -0.14 -2.80 4.90 30.68 0.15 -2.65 16 28 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.06 1.20 5.57 -2.39 -0.01 1.19 16 30 H 0.04 1.14 5.24 -2.39 -0.01 1.12 16 31 H 0.06 1.91 6.76 -2.39 -0.02 1.89 16 32 H 0.03 1.34 6.92 -2.39 -0.02 1.33 16 33 H 0.08 2.26 6.84 -2.39 -0.02 2.24 16 34 H 0.40 13.57 3.25 -92.71 -0.30 13.27 16 35 H 0.18 5.53 8.06 -2.91 -0.02 5.50 16 36 H 0.13 6.00 6.53 -2.91 -0.02 5.98 16 37 H 0.29 15.03 6.27 -92.71 -0.58 14.45 16 38 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.07 1.84 5.02 -2.39 -0.01 1.83 16 40 H 0.06 1.16 7.82 -2.39 -0.02 1.14 16 41 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.06 1.10 7.82 -2.39 -0.02 1.08 16 43 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.10 1.78 6.91 -2.39 -0.02 1.76 16 45 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -66.35 354.34 2.74 -63.62 By element: Atomic # 1 Polarization: 41.77 SS G_CDS: 0.92 Total: 42.70 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 5.22 Total: -27.50 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: -1.30 Total: -68.66 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -2.91 Total: -54.71 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.06 Total: 45.10 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -1.26 Total: -0.54 kcal Total: -66.35 2.74 -63.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875796959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.694 kcal (2) G-P(sol) polarization free energy of solvation -66.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds