Wall clock time and date at job start Tue Mar 31 2020 23:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00195 * 2 1 4 4 C 1.53005 * 109.54600 * 63.22657 * 3 2 1 5 5 H 1.09001 * 109.47272 * 169.95546 * 4 3 2 6 6 C 1.52996 * 109.46849 * 49.94810 * 4 3 2 7 7 N 1.46508 * 109.46645 * 289.95512 * 4 3 2 8 8 C 1.34777 * 119.99371 * 191.19967 * 7 4 3 9 9 O 1.21763 * 120.00259 * 359.97438 * 8 7 4 10 10 C 1.46239 * 119.99681 * 179.97438 * 8 7 4 11 11 S 1.75663 * 125.22896 * 0.02562 * 10 8 7 12 12 C 1.75474 * 92.09231 * 180.02562 * 11 10 8 13 13 C 1.32764 * 111.36438 * 359.97438 * 12 11 10 14 14 C 1.39544 * 125.22757 * 179.71676 * 10 8 7 15 15 C 1.40537 * 123.71445 * 359.97438 * 14 10 8 16 16 H 1.08000 * 120.00362 * 21.55547 * 15 14 10 17 17 C 1.40311 * 119.99983 * 201.55482 * 15 14 10 18 18 N 1.30636 * 119.99975 * 10.49677 * 17 15 14 19 19 Si 1.86805 * 119.99997 * 190.49512 * 17 15 14 20 20 H 1.48496 * 109.46843 * 89.99872 * 19 17 15 21 21 H 1.48497 * 109.47321 * 210.00168 * 19 17 15 22 22 H 1.48508 * 109.47022 * 330.00141 * 19 17 15 23 23 C 1.53182 * 109.61844 * 183.44920 * 3 2 1 24 24 C 1.53089 * 109.16144 * 62.93021 * 23 3 2 25 25 O 1.42897 * 109.41691 * 57.60919 * 24 23 3 26 26 C 1.42907 * 114.09803 * 298.83888 * 25 24 23 27 27 C 1.53097 * 109.41319 * 61.16203 * 26 25 24 28 28 H 1.09003 * 109.47053 * 171.95702 * 1 2 3 29 29 H 1.08997 * 109.47586 * 291.96470 * 1 2 3 30 30 H 1.09003 * 109.46882 * 51.96398 * 1 2 3 31 31 H 1.09001 * 109.47784 * 300.00422 * 6 4 3 32 32 H 1.09006 * 109.47147 * 60.00823 * 6 4 3 33 33 H 1.09003 * 109.46893 * 179.97438 * 6 4 3 34 34 H 0.97000 * 120.00260 * 11.19806 * 7 4 3 35 35 H 1.08007 * 124.31515 * 179.97438 * 12 11 10 36 36 H 1.08000 * 122.78380 * 179.97438 * 13 12 11 37 37 H 0.97006 * 120.00110 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.51860 * 182.83405 * 23 3 2 39 39 H 1.08994 * 109.51872 * 303.02467 * 23 3 2 40 40 H 1.09009 * 109.47753 * 297.62547 * 24 23 3 41 41 H 1.09001 * 109.48958 * 177.60214 * 24 23 3 42 42 H 1.09001 * 109.48166 * 301.17618 * 26 25 24 43 43 H 1.08997 * 109.49004 * 181.14716 * 26 25 24 44 44 H 1.09002 * 109.52235 * 182.48391 * 27 26 25 45 45 H 1.09001 * 109.57515 * 62.32258 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6251 2.0372 1.2873 5 1 2.2071 2.9550 1.3715 6 6 1.9137 1.1380 2.4910 7 7 0.1977 2.3653 1.2540 8 6 -0.3222 3.2050 2.1712 9 8 0.3943 3.6904 3.0277 10 6 -1.7470 3.5330 2.1377 11 16 -2.9022 2.9134 0.9684 12 6 -4.2213 3.8097 1.7004 13 6 -3.8052 4.5158 2.7449 14 6 -2.3989 4.3815 3.0334 15 6 -1.7548 5.0364 4.0970 16 1 -0.6862 5.1903 4.0688 17 6 -2.5001 5.4905 5.1957 18 7 -3.7483 5.1300 5.3321 19 14 -1.7074 6.6104 6.4634 20 1 -1.9013 8.0270 6.0625 21 1 -2.3361 6.3805 7.7890 22 1 -0.2546 6.3138 6.5464 23 6 3.5352 1.1894 -0.0868 24 6 3.9140 0.5269 -1.4139 25 8 3.3823 1.2934 -2.4964 26 6 1.9570 1.3962 -2.4937 27 6 1.4995 2.0938 -1.2100 28 1 -0.3633 -1.0176 -0.1438 29 1 -0.3634 0.3844 0.9530 30 1 -0.3633 0.6332 -0.8094 31 1 1.3318 0.2202 2.4068 32 1 2.9758 0.8938 2.5158 33 1 1.6398 1.6595 3.4081 34 1 -0.3732 1.9783 0.5719 35 1 -5.2415 3.7895 1.3463 36 1 -4.4661 5.1362 3.3320 37 1 -4.2637 5.4442 6.0915 38 1 3.9795 2.1834 -0.0360 39 1 3.9020 0.5826 0.7410 40 1 3.5031 -0.4823 -1.4467 41 1 4.9996 0.4802 -1.5003 42 1 1.5205 0.3985 -2.5407 43 1 1.6326 1.9759 -3.3578 44 1 0.4105 2.1337 -1.1854 45 1 1.9019 3.1063 -1.1813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875796960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:43 Heat of formation + Delta-G solvation = -97.336477 kcal Electronic energy + Delta-G solvation = -28686.176651 eV Core-core repulsion = 24795.506159 eV Total energy + Delta-G solvation = -3890.670492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.75555 -38.38294 -37.26280 -36.03318 -34.15072 -33.11183 -32.49098 -31.35139 -29.91834 -28.80285 -26.90038 -26.18812 -25.03273 -23.52485 -22.49959 -21.36326 -20.18920 -19.76259 -18.80397 -17.81796 -16.55102 -16.16045 -15.96816 -15.79742 -15.62132 -15.34611 -15.32683 -14.66460 -14.35788 -14.07718 -13.77574 -13.57566 -13.19947 -12.87830 -12.69186 -12.50602 -12.45498 -12.33155 -12.07264 -11.87076 -11.61202 -11.51559 -11.43081 -11.32576 -11.21083 -11.01879 -10.92205 -10.54570 -10.47605 -10.38621 -10.17210 -9.78391 -9.69463 -9.34468 -9.25784 -8.40813 -8.26415 -7.54631 -7.21218 -7.09992 -4.58099 2.11357 2.92609 2.96432 3.04332 3.07063 3.58817 3.66880 3.75922 3.79320 3.81225 3.98486 4.39477 4.58892 4.64691 4.70205 4.90351 5.15337 5.21929 5.23832 5.30893 5.41517 5.48206 5.51054 5.57299 5.64225 5.65330 5.77277 5.83812 5.89210 5.96444 5.99176 6.04991 6.10957 6.31309 6.63481 6.66169 6.78429 7.09537 7.12996 7.15305 7.17260 7.27184 7.43516 7.65407 8.31207 8.38884 8.55344 8.73708 9.56053 9.80298 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017008 B = 0.003536 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.845620 B = 7916.744483 C = 8901.311764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.371 6.371 3 C 0.111 3.889 4 C 0.134 3.866 5 H 0.080 0.920 6 C -0.158 4.158 7 N -0.753 5.753 8 C 0.600 3.400 9 O -0.561 6.561 10 C -0.433 4.433 11 S -0.062 6.062 12 C -0.204 4.204 13 C -0.099 4.099 14 C 0.140 3.860 15 C -0.375 4.375 16 H 0.113 0.887 17 C 0.067 3.933 18 N -0.776 5.776 19 Si 0.925 3.075 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.253 1.253 23 C -0.138 4.138 24 C 0.065 3.935 25 O -0.385 6.385 26 C 0.067 3.933 27 C -0.184 4.184 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.390 0.610 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.289 0.711 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.423 -6.497 -9.020 12.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.290 6.290 3 C 0.072 3.928 4 C 0.028 3.972 5 H 0.098 0.902 6 C -0.216 4.216 7 N -0.411 5.411 8 C 0.397 3.603 9 O -0.444 6.444 10 C -0.552 4.552 11 S 0.193 5.807 12 C -0.337 4.337 13 C -0.131 4.131 14 C 0.129 3.871 15 C -0.405 4.405 16 H 0.131 0.869 17 C -0.155 4.155 18 N -0.400 5.400 19 Si 0.748 3.252 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.177 1.177 23 C -0.176 4.176 24 C -0.012 4.012 25 O -0.303 6.303 26 C -0.010 4.010 27 C -0.222 4.222 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.229 0.771 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.073 0.927 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.042 -7.180 -9.611 13.910 hybrid contribution -0.925 1.268 1.690 2.307 sum 6.116 -5.912 -7.920 11.623 Atomic orbital electron populations 1.23234 0.81397 1.02850 1.01752 1.87895 1.19615 1.26562 1.94878 1.21749 0.94013 0.83601 0.93485 1.21237 0.83893 0.97958 0.94094 0.90210 1.22098 1.00747 0.99742 0.98994 1.46530 1.08392 1.51304 1.34882 1.16860 0.86257 0.77112 0.80069 1.90641 1.61087 1.54929 1.37774 1.22535 0.95025 1.23792 1.13839 1.82605 1.02237 1.56764 1.39118 1.24920 1.00628 1.05379 1.02816 1.21796 0.96584 0.99647 0.95048 1.17933 0.89689 0.88252 0.91260 1.20108 0.97718 1.24108 0.98609 0.86880 1.26411 0.94412 0.94890 0.99783 1.69665 1.08717 1.33871 1.27746 0.86004 0.81142 0.79842 0.78243 1.18866 1.19924 1.17683 1.22176 0.92646 1.03180 0.99548 1.22523 0.98797 0.94456 0.85418 1.87898 1.20701 1.73692 1.48044 1.22492 0.81294 0.99990 0.97189 1.22795 1.02577 1.01153 0.95631 0.89565 0.91546 0.93552 0.92375 0.92621 0.91045 0.77124 0.84483 0.83522 0.90029 0.89483 0.89531 0.92326 0.88934 0.92721 0.88925 0.90081 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 8.91 101.05 0.90 0.95 16 2 O -0.37 -4.94 8.35 -35.23 -0.29 -5.24 16 3 C 0.11 1.47 0.37 -90.43 -0.03 1.44 16 4 C 0.13 2.18 1.75 -67.93 -0.12 2.06 16 5 H 0.08 1.40 7.98 -51.93 -0.41 0.99 16 6 C -0.16 -2.56 8.79 37.16 0.33 -2.23 16 7 N -0.75 -14.20 3.53 -55.24 -0.19 -14.39 16 8 C 0.60 14.32 7.53 -13.05 -0.10 14.22 16 9 O -0.56 -14.91 13.27 5.13 0.07 -14.84 16 10 C -0.43 -10.74 6.51 -35.88 -0.23 -10.97 16 11 S -0.06 -1.28 22.25 -107.50 -2.39 -3.67 16 12 C -0.20 -4.34 11.07 28.86 0.32 -4.02 16 13 C -0.10 -2.36 9.06 -39.12 -0.35 -2.71 16 14 C 0.14 3.67 5.69 -106.21 -0.60 3.06 16 15 C -0.37 -9.96 8.56 -37.94 -0.32 -10.28 16 16 H 0.11 3.16 5.96 -52.49 -0.31 2.85 16 17 C 0.07 1.61 5.39 -17.28 -0.09 1.52 16 18 N -0.78 -18.43 10.74 55.57 0.60 -17.83 16 19 Si 0.92 18.26 29.58 -169.99 -5.03 13.24 16 20 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.25 -5.19 7.11 56.52 0.40 -4.79 16 23 C -0.14 -1.54 4.91 -26.59 -0.13 -1.67 16 24 C 0.06 0.68 6.69 37.20 0.25 0.93 16 25 O -0.38 -4.72 10.77 -35.23 -0.38 -5.10 16 26 C 0.07 0.76 6.70 37.21 0.25 1.01 16 27 C -0.18 -2.33 4.23 -26.59 -0.11 -2.44 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.01 5.22 -51.93 -0.27 0.74 16 30 H 0.05 0.56 5.57 -51.93 -0.29 0.27 16 31 H 0.06 0.94 6.76 -51.93 -0.35 0.59 16 32 H 0.05 0.76 6.84 -51.93 -0.36 0.40 16 33 H 0.07 1.38 7.02 -51.93 -0.36 1.02 16 34 H 0.39 6.74 3.22 -40.82 -0.13 6.61 16 35 H 0.14 2.47 8.06 -52.48 -0.42 2.05 16 36 H 0.15 3.49 6.30 -52.49 -0.33 3.16 16 37 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 0.90 6.91 -51.93 -0.36 0.54 16 40 H 0.06 0.62 7.82 -51.92 -0.41 0.21 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.60 7.82 -51.93 -0.41 0.19 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.08 1.06 5.04 -51.93 -0.26 0.80 16 45 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 355.49 15.07 5.36 5.36 Total: -1.00 -28.79 355.49 -8.25 -37.04 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -5.92 Total: 14.59 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -0.06 Total: -9.15 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.40 Total: -32.22 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.61 Total: -25.18 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.24 kcal Atomic # 16 Polarization: -1.28 SS G_CDS: -2.39 Total: -3.67 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.79 -8.25 -37.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875796960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.293 kcal (2) G-P(sol) polarization free energy of solvation -28.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds