Wall clock time and date at job start Tue Mar 31 2020 23:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00195 * 2 1 4 4 C 1.53005 * 109.54600 * 63.22657 * 3 2 1 5 5 H 1.09001 * 109.47272 * 169.95546 * 4 3 2 6 6 C 1.52996 * 109.46849 * 49.94810 * 4 3 2 7 7 N 1.46508 * 109.46645 * 289.95512 * 4 3 2 8 8 C 1.34777 * 119.99371 * 191.19967 * 7 4 3 9 9 O 1.21763 * 120.00259 * 359.97438 * 8 7 4 10 10 C 1.46239 * 119.99681 * 179.97438 * 8 7 4 11 11 S 1.75663 * 125.22896 * 0.02562 * 10 8 7 12 12 C 1.75474 * 92.09231 * 180.02562 * 11 10 8 13 13 C 1.32764 * 111.36438 * 359.97438 * 12 11 10 14 14 C 1.39544 * 125.22757 * 179.71676 * 10 8 7 15 15 C 1.40537 * 123.71445 * 359.97438 * 14 10 8 16 16 H 1.08000 * 120.00362 * 21.55547 * 15 14 10 17 17 C 1.40311 * 119.99983 * 201.55482 * 15 14 10 18 18 N 1.30636 * 119.99975 * 10.49677 * 17 15 14 19 19 Si 1.86805 * 119.99997 * 190.49512 * 17 15 14 20 20 H 1.48496 * 109.46843 * 89.99872 * 19 17 15 21 21 H 1.48497 * 109.47321 * 210.00168 * 19 17 15 22 22 H 1.48508 * 109.47022 * 330.00141 * 19 17 15 23 23 C 1.53182 * 109.61844 * 183.44920 * 3 2 1 24 24 C 1.53089 * 109.16144 * 62.93021 * 23 3 2 25 25 O 1.42897 * 109.41691 * 57.60919 * 24 23 3 26 26 C 1.42907 * 114.09803 * 298.83888 * 25 24 23 27 27 C 1.53097 * 109.41319 * 61.16203 * 26 25 24 28 28 H 1.09003 * 109.47053 * 171.95702 * 1 2 3 29 29 H 1.08997 * 109.47586 * 291.96470 * 1 2 3 30 30 H 1.09003 * 109.46882 * 51.96398 * 1 2 3 31 31 H 1.09001 * 109.47784 * 300.00422 * 6 4 3 32 32 H 1.09006 * 109.47147 * 60.00823 * 6 4 3 33 33 H 1.09003 * 109.46893 * 179.97438 * 6 4 3 34 34 H 0.97000 * 120.00260 * 11.19806 * 7 4 3 35 35 H 1.08007 * 124.31515 * 179.97438 * 12 11 10 36 36 H 1.08000 * 122.78380 * 179.97438 * 13 12 11 37 37 H 0.97006 * 120.00110 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.51860 * 182.83405 * 23 3 2 39 39 H 1.08994 * 109.51872 * 303.02467 * 23 3 2 40 40 H 1.09009 * 109.47753 * 297.62547 * 24 23 3 41 41 H 1.09001 * 109.48958 * 177.60214 * 24 23 3 42 42 H 1.09001 * 109.48166 * 301.17618 * 26 25 24 43 43 H 1.08997 * 109.49004 * 181.14716 * 26 25 24 44 44 H 1.09002 * 109.52235 * 182.48391 * 27 26 25 45 45 H 1.09001 * 109.57515 * 62.32258 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6251 2.0372 1.2873 5 1 2.2071 2.9550 1.3715 6 6 1.9137 1.1380 2.4910 7 7 0.1977 2.3653 1.2540 8 6 -0.3222 3.2050 2.1712 9 8 0.3943 3.6904 3.0277 10 6 -1.7470 3.5330 2.1377 11 16 -2.9022 2.9134 0.9684 12 6 -4.2213 3.8097 1.7004 13 6 -3.8052 4.5158 2.7449 14 6 -2.3989 4.3815 3.0334 15 6 -1.7548 5.0364 4.0970 16 1 -0.6862 5.1903 4.0688 17 6 -2.5001 5.4905 5.1957 18 7 -3.7483 5.1300 5.3321 19 14 -1.7074 6.6104 6.4634 20 1 -1.9013 8.0270 6.0625 21 1 -2.3361 6.3805 7.7890 22 1 -0.2546 6.3138 6.5464 23 6 3.5352 1.1894 -0.0868 24 6 3.9140 0.5269 -1.4139 25 8 3.3823 1.2934 -2.4964 26 6 1.9570 1.3962 -2.4937 27 6 1.4995 2.0938 -1.2100 28 1 -0.3633 -1.0176 -0.1438 29 1 -0.3634 0.3844 0.9530 30 1 -0.3633 0.6332 -0.8094 31 1 1.3318 0.2202 2.4068 32 1 2.9758 0.8938 2.5158 33 1 1.6398 1.6595 3.4081 34 1 -0.3732 1.9783 0.5719 35 1 -5.2415 3.7895 1.3463 36 1 -4.4661 5.1362 3.3320 37 1 -4.2637 5.4442 6.0915 38 1 3.9795 2.1834 -0.0360 39 1 3.9020 0.5826 0.7410 40 1 3.5031 -0.4823 -1.4467 41 1 4.9996 0.4802 -1.5003 42 1 1.5205 0.3985 -2.5407 43 1 1.6326 1.9759 -3.3578 44 1 0.4105 2.1337 -1.1854 45 1 1.9019 3.1063 -1.1813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875796960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:42 Heat of formation + Delta-G solvation = -115.178884 kcal Electronic energy + Delta-G solvation = -28686.950356 eV Core-core repulsion = 24795.506159 eV Total energy + Delta-G solvation = -3891.444197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.91396 -39.93596 -38.47582 -37.77057 -35.59628 -34.93742 -33.73758 -32.32621 -31.36586 -30.51078 -28.15909 -27.77190 -26.23055 -24.48694 -24.12310 -22.78488 -21.61068 -21.12746 -20.60609 -19.39565 -17.88055 -17.50191 -17.37205 -16.97959 -16.88137 -16.67650 -16.57211 -15.95866 -15.69933 -15.49005 -15.34178 -15.22239 -14.41872 -14.22899 -14.05184 -13.86611 -13.73401 -13.68458 -13.53468 -13.39149 -13.16510 -12.99366 -12.81738 -12.73492 -12.65638 -12.28437 -12.13225 -12.08244 -12.04051 -11.64481 -11.44593 -11.34497 -11.09226 -10.76777 -10.44840 -10.19567 -9.92803 -9.38000 -8.97935 -8.88703 -6.47876 0.29058 1.31416 1.32763 1.34300 1.45843 1.75697 1.95979 2.15222 2.45913 2.52565 2.64645 2.95523 3.30523 3.45166 3.58087 3.69319 3.98228 4.19232 4.23211 4.26941 4.29717 4.35724 4.42160 4.43938 4.56350 4.59175 4.66785 4.75809 4.77021 4.79635 4.83551 4.96458 4.99754 5.03001 5.05982 5.18459 5.24597 5.29049 5.36869 5.55439 5.72620 5.81872 6.08229 6.24169 6.37783 6.55334 6.68988 6.93238 7.73561 8.03987 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017008 B = 0.003536 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.845620 B = 7916.744483 C = 8901.311764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.368 6.368 3 C 0.118 3.882 4 C 0.129 3.871 5 H 0.064 0.936 6 C -0.150 4.150 7 N -0.736 5.736 8 C 0.591 3.409 9 O -0.599 6.599 10 C -0.471 4.471 11 S 0.001 5.999 12 C -0.190 4.190 13 C -0.129 4.129 14 C 0.111 3.889 15 C -0.415 4.415 16 H 0.085 0.915 17 C 0.036 3.964 18 N -0.791 5.791 19 Si 0.988 3.012 20 H -0.250 1.250 21 H -0.254 1.254 22 H -0.273 1.273 23 C -0.137 4.137 24 C 0.066 3.934 25 O -0.397 6.397 26 C 0.071 3.929 27 C -0.183 4.183 28 H 0.111 0.889 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.032 0.968 34 H 0.399 0.601 35 H 0.177 0.823 36 H 0.143 0.857 37 H 0.301 0.699 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.116 0.884 42 H 0.061 0.939 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.272 -7.639 -10.485 14.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.287 6.287 3 C 0.078 3.922 4 C 0.024 3.976 5 H 0.082 0.918 6 C -0.208 4.208 7 N -0.393 5.393 8 C 0.387 3.613 9 O -0.485 6.485 10 C -0.589 4.589 11 S 0.256 5.744 12 C -0.324 4.324 13 C -0.161 4.161 14 C 0.100 3.900 15 C -0.446 4.446 16 H 0.103 0.897 17 C -0.184 4.184 18 N -0.415 5.415 19 Si 0.808 3.192 20 H -0.174 1.174 21 H -0.178 1.178 22 H -0.197 1.197 23 C -0.175 4.175 24 C -0.011 4.011 25 O -0.316 6.316 26 C -0.006 4.006 27 C -0.221 4.221 28 H 0.129 0.871 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.239 0.761 35 H 0.194 0.806 36 H 0.161 0.839 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.125 0.875 44 H 0.093 0.907 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.874 -8.364 -11.125 15.523 hybrid contribution -0.887 1.516 2.053 2.701 sum 5.987 -6.848 -9.072 12.847 Atomic orbital electron populations 1.23284 0.81193 1.04494 1.00517 1.87910 1.19850 1.26262 1.94686 1.21714 0.95512 0.83313 0.91630 1.21450 0.81990 0.97804 0.96327 0.91835 1.22005 1.02621 0.99057 0.97090 1.46365 1.09715 1.49660 1.33601 1.17050 0.86242 0.77543 0.80434 1.90609 1.61966 1.56459 1.39444 1.23031 0.96542 1.24102 1.15258 1.82186 1.00082 1.55329 1.36754 1.25434 1.02553 1.03227 1.01212 1.21682 0.95682 1.01835 0.96922 1.18383 0.91289 0.88597 0.91703 1.20073 0.96819 1.26993 1.00720 0.89695 1.27054 0.94925 0.95708 1.00717 1.69642 1.09280 1.33917 1.28660 0.85097 0.78977 0.78474 0.76634 1.17433 1.17760 1.19710 1.22232 0.90785 1.03738 1.00755 1.22647 1.00155 0.94054 0.84225 1.87892 1.21037 1.74033 1.48647 1.22531 0.81074 1.00353 0.96637 1.22782 1.02117 1.00822 0.96367 0.87101 0.94254 0.92644 0.92211 0.89704 0.94841 0.76054 0.80584 0.83940 0.88722 0.89362 0.88498 0.92076 0.86650 0.92029 0.87465 0.90696 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 8.91 113.37 1.01 1.04 16 2 O -0.37 -9.09 8.35 -148.98 -1.24 -10.34 16 3 C 0.12 2.98 0.37 -10.67 0.00 2.98 16 4 C 0.13 4.28 1.75 44.99 0.08 4.35 16 5 H 0.06 2.32 7.98 -2.39 -0.02 2.30 16 6 C -0.15 -4.93 8.79 71.98 0.63 -4.30 16 7 N -0.74 -28.38 3.53 -446.87 -1.58 -29.96 16 8 C 0.59 29.48 7.53 86.32 0.65 30.13 16 9 O -0.60 -33.95 13.27 -4.55 -0.06 -34.01 16 10 C -0.47 -24.00 6.51 24.67 0.16 -23.84 16 11 S 0.00 0.05 22.25 -56.49 -1.26 -1.20 16 12 C -0.19 -7.83 11.07 66.64 0.74 -7.09 16 13 C -0.13 -6.23 9.06 22.61 0.20 -6.03 16 14 C 0.11 6.08 5.69 -20.89 -0.12 5.96 16 15 C -0.42 -23.31 8.56 23.34 0.20 -23.11 16 16 H 0.09 5.13 5.96 -2.91 -0.02 5.11 16 17 C 0.04 1.79 5.39 85.37 0.46 2.25 16 18 N -0.79 -38.09 10.74 21.89 0.24 -37.86 16 19 Si 0.99 38.32 29.58 68.60 2.03 40.35 16 20 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 21 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 C -0.14 -2.81 4.91 30.68 0.15 -2.66 16 24 C 0.07 1.19 6.69 72.01 0.48 1.68 16 25 O -0.40 -8.76 10.77 -148.98 -1.60 -10.37 16 26 C 0.07 1.43 6.70 72.01 0.48 1.91 16 27 C -0.18 -4.41 4.23 30.69 0.13 -4.28 16 28 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.04 1.17 5.22 -2.39 -0.01 1.16 16 30 H 0.06 1.22 5.57 -2.39 -0.01 1.21 16 31 H 0.06 1.92 6.76 -2.39 -0.02 1.91 16 32 H 0.08 2.25 6.84 -2.38 -0.02 2.23 16 33 H 0.03 1.35 7.02 -2.39 -0.02 1.33 16 34 H 0.40 13.74 3.22 -92.71 -0.30 13.45 16 35 H 0.18 5.75 8.06 -2.91 -0.02 5.73 16 36 H 0.14 6.89 6.30 -2.91 -0.02 6.88 16 37 H 0.30 12.74 8.29 -92.70 -0.77 11.97 16 38 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.10 1.79 6.91 -2.39 -0.02 1.77 16 40 H 0.06 1.10 7.82 -2.38 -0.02 1.09 16 41 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.06 1.17 7.82 -2.39 -0.02 1.16 16 43 H 0.11 1.84 8.14 -2.39 -0.02 1.83 16 44 H 0.07 1.87 5.04 -2.39 -0.01 1.86 16 45 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -65.74 355.49 2.52 -63.23 By element: Atomic # 1 Polarization: 40.44 SS G_CDS: 0.74 Total: 41.17 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 5.26 Total: -21.02 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -1.34 Total: -67.81 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -2.91 Total: -54.72 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -1.26 Total: -1.20 kcal Total: -65.74 2.52 -63.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875796960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.952 kcal (2) G-P(sol) polarization free energy of solvation -65.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds