Wall clock time and date at job start Tue Mar 31 2020 23:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.62996 * 2 1 4 4 C 1.53239 * 109.62406 * 120.39012 * 2 1 3 5 5 N 1.46899 * 109.34143 * 66.07607 * 4 2 1 6 6 C 1.38505 * 110.99755 * 187.25313 * 5 4 2 7 7 C 1.39895 * 120.50464 * 180.02562 * 6 5 4 8 8 C 1.39032 * 118.22494 * 179.97438 * 7 6 5 9 9 C 1.48436 * 120.50211 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99901 * 180.02562 * 9 8 7 11 11 O 1.21480 * 120.00323 * 359.97438 * 9 8 7 12 12 N 1.33349 * 118.99605 * 0.02562 * 8 7 6 13 13 C 1.31662 * 120.92099 * 359.97438 * 12 8 7 14 14 Cl 1.73593 * 119.01244 * 179.97438 * 13 12 8 15 15 N 1.32001 * 121.97159 * 0.02562 * 13 12 8 16 16 C 1.46899 * 111.27165 * 63.10130 * 5 4 2 17 17 C 1.53237 * 109.33840 * 296.89427 * 16 5 4 18 18 H 1.08993 * 109.63012 * 294.12377 * 17 16 5 19 19 C 1.52997 * 109.78674 * 173.63282 * 17 16 5 20 20 N 1.47077 * 108.51967 * 53.83343 * 17 16 5 21 21 C 1.36932 * 120.88458 * 128.79388 * 20 17 16 22 22 H 1.08001 * 120.00228 * 231.71048 * 21 20 17 23 23 C 1.38814 * 120.00047 * 51.70742 * 21 20 17 24 24 N 1.31623 * 120.00017 * 205.82361 * 23 21 20 25 25 Si 1.86799 * 119.99855 * 25.82023 * 23 21 20 26 26 H 1.48500 * 109.47119 * 94.77101 * 25 23 21 27 27 H 1.48504 * 109.47043 * 214.76201 * 25 23 21 28 28 H 1.48496 * 109.47413 * 334.76639 * 25 23 21 29 29 H 1.09006 * 109.46921 * 299.61605 * 1 2 3 30 30 H 1.09004 * 109.46941 * 59.60902 * 1 2 3 31 31 H 1.09000 * 109.47604 * 179.61258 * 1 2 3 32 32 H 1.08995 * 109.49449 * 306.11002 * 4 2 1 33 33 H 1.09007 * 109.50896 * 186.04586 * 4 2 1 34 34 H 1.08006 * 120.88928 * 359.95658 * 7 6 5 35 35 H 0.97005 * 120.00058 * 0.02562 * 10 9 8 36 36 H 0.97008 * 120.00375 * 180.02562 * 10 9 8 37 37 H 1.08995 * 109.48961 * 56.85812 * 16 5 4 38 38 H 1.08998 * 109.49158 * 176.93425 * 16 5 4 39 39 H 1.08995 * 109.47490 * 293.07479 * 19 17 16 40 40 H 1.09004 * 109.46903 * 53.07803 * 19 17 16 41 41 H 1.09002 * 109.46983 * 173.06928 * 19 17 16 42 42 H 0.97001 * 119.99931 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0447 -0.7302 1.2451 5 7 1.6786 -2.1504 1.1622 6 6 1.9831 -2.8110 2.3409 7 6 1.7163 -4.1773 2.4786 8 6 2.0417 -4.7928 3.6820 9 6 1.7800 -6.2401 3.8830 10 7 2.0990 -6.8263 5.0539 11 8 1.2775 -6.8959 2.9924 12 7 2.5914 -4.0632 4.6534 13 6 2.8267 -2.7788 4.4842 14 17 3.5436 -1.8761 5.7822 15 7 2.5328 -2.1569 3.3576 16 6 2.3223 -2.8005 0.0129 17 6 1.8189 -2.1553 -1.2826 18 1 0.7568 -2.3653 -1.4076 19 6 2.5972 -2.7135 -2.4757 20 7 2.0279 -0.7022 -1.1926 21 6 2.6694 -0.0211 -2.1925 22 1 3.4990 0.6290 -1.9569 23 6 2.2533 -0.1662 -3.5088 24 7 3.1029 0.0360 -4.4936 25 14 0.4878 -0.6487 -3.8825 26 1 -0.3176 0.5740 -4.1301 27 1 0.4561 -1.5148 -5.0884 28 1 -0.0784 -1.3889 -2.7264 29 1 -0.3633 0.5079 0.8935 30 1 -0.3633 0.5199 -0.8865 31 1 -0.3634 -1.0276 -0.0069 32 1 1.5965 -0.2904 2.1359 33 1 3.1293 -0.6367 1.2996 34 1 1.2693 -4.7390 1.6716 35 1 2.4992 -6.3024 5.7655 36 1 1.9283 -7.7722 5.1852 37 1 3.4030 -2.6782 0.0842 38 1 2.0754 -3.8622 0.0103 39 1 3.6362 -2.3897 -2.4154 40 1 2.5545 -3.8026 -2.4599 41 1 2.1552 -2.3460 -3.4018 42 1 2.8120 -0.0650 -5.4135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882518533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:59 Heat of formation + Delta-G solvation = 34.128266 kcal Electronic energy + Delta-G solvation = -27979.742168 eV Core-core repulsion = 24021.481116 eV Total energy + Delta-G solvation = -3958.261052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.120 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.71153 -40.76153 -40.05724 -38.08582 -37.16306 -35.13396 -34.58203 -34.28627 -33.54604 -32.32031 -30.04433 -28.13471 -27.45950 -26.13835 -25.41409 -24.10696 -22.95916 -22.05898 -20.43977 -19.65756 -19.30216 -18.60742 -17.99403 -17.25058 -17.05578 -17.04187 -16.74906 -16.42794 -16.13665 -15.98917 -15.54616 -15.40769 -15.23204 -14.90702 -14.72369 -14.19569 -13.83573 -13.50222 -13.12114 -13.02714 -12.88805 -12.65891 -12.60148 -12.46948 -12.35351 -12.29370 -12.07735 -11.87813 -11.78829 -11.76622 -11.61199 -11.28044 -11.03751 -10.82079 -10.74078 -10.42933 -9.69770 -8.45160 -8.21161 -5.70086 -0.82171 -0.47740 0.16270 1.36567 1.43340 1.45837 1.55252 1.94285 2.12002 2.44331 2.44743 2.93490 3.02073 3.21265 3.31483 3.50126 3.76320 3.98684 4.04283 4.11220 4.20772 4.33523 4.39847 4.46946 4.61149 4.68218 4.69415 4.81902 4.85798 4.92708 5.09491 5.16599 5.26593 5.28490 5.46288 5.59178 5.65679 5.75818 5.77404 5.99447 6.18329 6.33282 6.52514 7.07365 7.08319 7.61505 8.19993 8.96603 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.003563 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.357455 B = 7856.304644 C = 8925.362761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.157 3.843 3 H 0.071 0.929 4 C 0.072 3.928 5 N -0.459 5.459 6 C 0.379 3.621 7 C -0.182 4.182 8 C 0.153 3.847 9 C 0.585 3.415 10 N -0.805 5.805 11 O -0.554 6.554 12 N -0.504 5.504 13 C 0.382 3.618 14 Cl 0.045 6.955 15 N -0.545 5.545 16 C 0.059 3.941 17 C 0.164 3.836 18 H 0.046 0.954 19 C -0.131 4.131 20 N -0.604 5.604 21 C -0.268 4.268 22 H 0.029 0.971 23 C 0.027 3.973 24 N -0.930 5.930 25 Si 0.909 3.091 26 H -0.303 1.303 27 H -0.300 1.300 28 H -0.232 1.232 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.041 0.959 34 H 0.174 0.826 35 H 0.423 0.577 36 H 0.421 0.579 37 H 0.046 0.954 38 H 0.107 0.893 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.039 0.961 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.325 -11.440 21.866 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.051 3.949 3 H 0.089 0.911 4 C -0.056 4.056 5 N -0.174 5.174 6 C 0.137 3.863 7 C -0.209 4.209 8 C 0.008 3.992 9 C 0.366 3.634 10 N -0.370 5.370 11 O -0.431 6.431 12 N -0.227 5.227 13 C 0.086 3.914 14 Cl 0.072 6.928 15 N -0.269 5.269 16 C -0.067 4.067 17 C 0.058 3.942 18 H 0.064 0.936 19 C -0.188 4.188 20 N -0.329 5.329 21 C -0.397 4.397 22 H 0.047 0.953 23 C -0.173 4.173 24 N -0.571 5.571 25 Si 0.737 3.263 26 H -0.231 1.231 27 H -0.227 1.227 28 H -0.156 1.156 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.060 0.940 34 H 0.192 0.808 35 H 0.255 0.745 36 H 0.256 0.744 37 H 0.064 0.936 38 H 0.125 0.875 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.639 -11.154 21.736 24.573 hybrid contribution -0.107 0.085 -0.911 0.921 sum -2.746 -11.069 20.826 23.744 Atomic orbital electron populations 1.22059 0.96637 1.01381 1.00527 1.20989 0.93218 0.95364 0.85351 0.91107 1.22445 0.99087 0.84423 0.99599 1.58723 1.52974 1.05441 1.00292 1.20230 0.86208 0.89453 0.90431 1.22543 1.03405 0.94161 1.00776 1.21355 0.93605 0.94946 0.89287 1.17514 0.78022 0.84414 0.83495 1.43452 1.63104 1.15210 1.15209 1.90874 1.44776 1.63842 1.43572 1.67772 1.16385 1.06215 1.32310 1.22827 0.93147 0.86695 0.88719 1.98450 1.79635 1.71889 1.42783 1.67796 1.15831 1.41666 1.01615 1.22899 0.96538 0.99070 0.88241 1.20949 0.97323 0.83767 0.92117 0.93613 1.21779 1.00450 0.99555 0.97061 1.44526 1.66785 1.01860 1.19703 1.18196 1.09656 1.25874 0.86017 0.95294 1.26202 0.99183 0.96193 0.95724 1.70043 1.35476 1.51771 0.99806 0.86465 0.84205 0.77488 0.78162 1.23078 1.22732 1.15575 0.91232 0.94904 0.92906 0.88536 0.94032 0.80811 0.74475 0.74447 0.93588 0.87475 0.93417 0.90568 0.94244 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 9.22 71.98 0.66 -4.26 16 2 C 0.16 5.78 3.31 44.96 0.15 5.93 16 3 H 0.07 2.73 7.95 -2.39 -0.02 2.71 16 4 C 0.07 2.28 4.23 86.38 0.37 2.65 16 5 N -0.46 -13.66 4.16 -700.32 -2.91 -16.58 16 6 C 0.38 10.28 6.41 133.30 0.85 11.14 16 7 C -0.18 -4.38 8.79 22.86 0.20 -4.18 16 8 C 0.15 3.33 6.79 41.82 0.28 3.62 16 9 C 0.58 11.54 8.10 86.96 0.70 12.25 16 10 N -0.81 -8.89 8.87 -175.20 -1.55 -10.44 16 11 O -0.55 -14.48 17.25 -3.65 -0.06 -14.54 16 12 N -0.50 -10.69 9.66 -180.19 -1.74 -12.44 16 13 C 0.38 9.05 8.17 180.86 1.48 10.53 16 14 Cl 0.04 0.87 29.26 -2.72 -0.08 0.79 16 15 N -0.54 -14.74 8.77 -188.34 -1.65 -16.40 16 16 C 0.06 1.82 4.72 86.38 0.41 2.23 16 17 C 0.16 6.23 2.05 44.96 0.09 6.33 16 18 H 0.05 1.78 5.98 -2.39 -0.01 1.77 16 19 C -0.13 -5.19 7.84 71.98 0.56 -4.63 16 20 N -0.60 -26.21 1.98 -650.67 -1.29 -27.50 16 21 C -0.27 -14.21 8.71 84.03 0.73 -13.48 16 22 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 23 C 0.03 1.46 3.76 84.86 0.32 1.78 16 24 N -0.93 -54.75 13.97 21.65 0.30 -54.45 16 25 Si 0.91 43.35 25.41 68.60 1.74 45.10 16 26 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 27 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 28 H -0.23 -10.20 5.18 99.48 0.52 -9.68 16 29 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.05 1.78 7.09 -2.39 -0.02 1.76 16 32 H 0.10 2.80 7.67 -2.39 -0.02 2.78 16 33 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.17 3.95 6.89 -2.91 -0.02 3.92 16 35 H 0.42 3.42 8.21 -92.70 -0.76 2.66 16 36 H 0.42 2.87 8.93 -92.70 -0.83 2.04 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.11 2.70 6.70 -2.39 -0.02 2.69 16 39 H 0.05 2.10 7.68 -2.39 -0.02 2.08 16 40 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.04 1.76 3.78 -2.39 -0.01 1.75 16 42 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -64.63 348.79 -1.11 -65.75 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -0.68 Total: 10.80 kcal Atomic # 6 Polarization: 23.09 SS G_CDS: 6.81 Total: 29.91 kcal Atomic # 7 Polarization: -128.95 SS G_CDS: -8.85 Total: -137.80 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.06 Total: -14.54 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.74 Total: 45.10 kcal Atomic # 17 Polarization: 0.87 SS G_CDS: -0.08 Total: 0.79 kcal Total: -64.63 -1.11 -65.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.875 kcal (2) G-P(sol) polarization free energy of solvation -64.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds