Wall clock time and date at job start Tue Mar 31 2020 23:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.62417 * 2 1 4 4 C 1.53242 * 109.62881 * 239.62041 * 2 1 3 5 5 N 1.46900 * 109.33793 * 186.26205 * 4 2 1 6 6 C 1.38507 * 110.99910 * 187.25406 * 5 4 2 7 7 C 1.39903 * 120.50320 * 180.02562 * 6 5 4 8 8 C 1.39033 * 118.21829 * 179.97438 * 7 6 5 9 9 C 1.48439 * 120.49776 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99731 * 180.02562 * 9 8 7 11 11 O 1.21474 * 120.00335 * 359.97438 * 9 8 7 12 12 N 1.33343 * 118.99934 * 359.97438 * 8 7 6 13 13 C 1.31656 * 120.92063 * 0.02562 * 12 8 7 14 14 Cl 1.73601 * 119.01397 * 179.97438 * 13 12 8 15 15 N 1.31996 * 121.97653 * 0.02562 * 13 12 8 16 16 C 1.46900 * 111.27094 * 63.10672 * 5 4 2 17 17 C 1.53236 * 109.33656 * 296.89118 * 16 5 4 18 18 H 1.09000 * 109.63259 * 173.53743 * 17 16 5 19 19 C 1.52998 * 109.79272 * 294.02804 * 17 16 5 20 20 N 1.47078 * 109.79294 * 120.49051 * 2 1 3 21 21 C 1.36935 * 120.87763 * 350.97049 * 20 2 1 22 22 H 1.07993 * 120.00475 * 26.18518 * 21 20 2 23 23 C 1.38820 * 119.99573 * 206.18330 * 21 20 2 24 24 N 1.31612 * 119.99982 * 17.48467 * 23 21 20 25 25 Si 1.86806 * 119.99622 * 197.48542 * 23 21 20 26 26 H 1.48500 * 109.46748 * 89.99962 * 25 23 21 27 27 H 1.48493 * 109.46803 * 210.00105 * 25 23 21 28 28 H 1.48502 * 109.47200 * 329.99998 * 25 23 21 29 29 H 1.09009 * 109.46823 * 180.37905 * 1 2 3 30 30 H 1.08998 * 109.47314 * 300.37997 * 1 2 3 31 31 H 1.08996 * 109.47521 * 60.38600 * 1 2 3 32 32 H 1.09000 * 109.49526 * 66.30198 * 4 2 1 33 33 H 1.09003 * 109.49407 * 306.22093 * 4 2 1 34 34 H 1.07995 * 120.88860 * 359.97438 * 7 6 5 35 35 H 0.96996 * 119.99948 * 359.97438 * 10 9 8 36 36 H 0.97000 * 119.99776 * 179.97438 * 10 9 8 37 37 H 1.08997 * 109.49215 * 56.85183 * 16 5 4 38 38 H 1.08999 * 109.49356 * 176.93915 * 16 5 4 39 39 H 1.09000 * 109.47617 * 179.12638 * 19 17 16 40 40 H 1.09002 * 109.47068 * 299.12598 * 19 17 16 41 41 H 1.08997 * 109.47315 * 59.12112 * 19 17 16 42 42 H 0.97003 * 119.99629 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0447 -0.7300 -1.2452 5 7 3.5059 -0.8580 -1.1647 6 6 4.0253 -1.3666 -2.3437 7 6 5.4023 -1.5705 -2.4834 8 6 5.8721 -2.0836 -3.6871 9 6 7.3234 -2.3205 -3.8898 10 7 7.7679 -2.8178 -5.0610 11 8 8.1106 -2.0652 -3.0006 12 7 4.9992 -2.3608 -4.6563 13 6 3.7103 -2.1545 -4.4852 14 17 2.6178 -2.5322 -5.7804 15 7 3.2237 -1.6680 -3.3587 16 6 3.9063 -1.6804 -0.0152 17 6 3.4678 -0.9894 1.2803 18 1 3.6589 -1.6465 2.1287 19 6 4.2427 0.3178 1.4581 20 7 2.0280 -0.7022 1.1925 21 6 1.1738 -1.0782 2.1946 22 1 0.1319 -1.2597 1.9763 23 6 1.6473 -1.2260 3.4911 24 7 2.7983 -0.6891 3.8366 25 14 0.6509 -2.1869 4.7455 26 1 1.0480 -3.6172 4.7023 27 1 0.9072 -1.6427 6.1031 28 1 -0.7947 -2.0647 4.4280 29 1 -0.3633 -1.0277 0.0068 30 1 -0.3634 0.5197 0.8865 31 1 -0.3634 0.5078 -0.8934 32 1 1.7779 -0.1617 -2.1363 33 1 1.5950 -1.7215 -1.2975 34 1 6.0821 -1.3355 -1.6778 35 1 7.1393 -3.0213 -5.7712 36 1 8.7163 -2.9722 -5.1936 37 1 3.4306 -2.6587 -0.0846 38 1 4.9895 -1.8014 -0.0142 39 1 3.9158 0.8125 2.3727 40 1 5.3092 0.1021 1.5229 41 1 4.0552 0.9702 0.6052 42 1 3.1293 -0.7927 4.7425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882518534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:05 Heat of formation + Delta-G solvation = 51.839385 kcal Electronic energy + Delta-G solvation = -27873.153387 eV Core-core repulsion = 23915.660347 eV Total energy + Delta-G solvation = -3957.493040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.120 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.55245 -39.58102 -38.69441 -37.04308 -35.58092 -34.08861 -33.22402 -32.75621 -31.75170 -30.72333 -27.95494 -26.78477 -25.80296 -24.94347 -23.80524 -23.02359 -21.14915 -20.81874 -18.83895 -18.63007 -18.18948 -17.10590 -16.36940 -16.13474 -15.79285 -15.72615 -15.33395 -14.93901 -14.73379 -14.42974 -14.09186 -13.97744 -13.87133 -13.43885 -13.06153 -12.13824 -12.03861 -11.76664 -11.69427 -11.55328 -11.25885 -11.22059 -11.11930 -11.00055 -10.83410 -10.71346 -10.62661 -10.54507 -10.15771 -10.12256 -10.04433 -9.86848 -9.66840 -9.58619 -9.42446 -8.60457 -8.29771 -6.78581 -5.85104 -3.26692 0.26253 0.67634 1.19064 2.44803 2.90938 3.32209 3.35092 3.42219 3.42617 3.55860 3.98952 4.34706 4.42459 4.58010 4.94486 5.11964 5.15820 5.28806 5.50663 5.59071 5.75991 5.80168 5.92088 5.99124 6.10308 6.22626 6.24510 6.33554 6.43238 6.46663 6.66744 6.78747 6.86536 6.90716 6.96485 7.04872 7.12074 7.15414 7.51749 7.66189 7.69622 7.83940 7.85671 8.34613 9.13833 9.75413 10.31862 11.22806 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.003475 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.299264 B = 8054.582022 C = 9297.658813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.167 3.833 3 H 0.036 0.964 4 C 0.055 3.945 5 N -0.452 5.452 6 C 0.387 3.613 7 C -0.181 4.181 8 C 0.148 3.852 9 C 0.584 3.416 10 N -0.831 5.831 11 O -0.521 6.521 12 N -0.521 5.521 13 C 0.391 3.609 14 Cl 0.023 6.977 15 N -0.534 5.534 16 C 0.042 3.958 17 C 0.196 3.804 18 H 0.107 0.893 19 C -0.140 4.140 20 N -0.585 5.585 21 C -0.252 4.252 22 H 0.074 0.926 23 C 0.004 3.996 24 N -0.898 5.898 25 Si 0.900 3.100 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.280 1.280 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.168 0.832 35 H 0.413 0.587 36 H 0.408 0.592 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.026 0.974 41 H 0.031 0.969 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.979 -3.357 -17.623 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.054 0.946 4 C -0.073 4.073 5 N -0.167 5.167 6 C 0.144 3.856 7 C -0.208 4.208 8 C 0.004 3.996 9 C 0.365 3.635 10 N -0.395 5.395 11 O -0.395 6.395 12 N -0.245 5.245 13 C 0.095 3.905 14 Cl 0.051 6.949 15 N -0.258 5.258 16 C -0.084 4.084 17 C 0.089 3.911 18 H 0.125 0.875 19 C -0.199 4.199 20 N -0.308 5.308 21 C -0.381 4.381 22 H 0.092 0.908 23 C -0.195 4.195 24 N -0.543 5.543 25 Si 0.730 3.270 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.186 0.814 35 H 0.244 0.756 36 H 0.239 0.761 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.045 0.955 41 H 0.050 0.950 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.886 -2.890 -17.414 18.316 hybrid contribution -0.232 -1.030 0.538 1.185 sum 4.654 -3.920 -16.876 17.939 Atomic orbital electron populations 1.21765 0.95282 1.01664 1.00686 1.20557 0.93056 0.94250 0.86126 0.94626 1.22797 0.82430 1.01470 1.00566 1.58792 1.14776 1.43286 0.99808 1.20424 0.89378 0.84763 0.91009 1.22500 0.95977 1.02297 1.00022 1.21096 0.93638 0.95151 0.89671 1.17646 0.85856 0.77163 0.82815 1.43592 1.12850 1.66582 1.16524 1.90877 1.55287 1.50955 1.42361 1.67664 1.02252 1.21784 1.32776 1.22533 0.86504 0.92970 0.88530 1.98434 1.60345 1.91885 1.44267 1.67848 1.40318 1.16498 1.01174 1.23323 1.00199 0.94556 0.90359 1.20502 0.83319 0.95745 0.91506 0.87501 1.22018 0.96962 0.99018 1.01890 1.44328 1.03261 1.65012 1.18193 1.19214 0.92947 1.39519 0.86464 0.90834 1.24999 0.97681 1.00052 0.96720 1.69988 1.21107 1.44792 1.18371 0.86323 0.79722 0.79984 0.80926 1.21585 1.21825 1.20537 0.92675 0.91567 0.93912 0.90334 0.92798 0.81424 0.75618 0.76086 0.93365 0.90507 0.90189 0.95499 0.94984 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.94 37.15 0.29 -2.11 16 2 C 0.17 3.27 3.25 -67.49 -0.22 3.05 16 3 H 0.04 0.75 7.63 -51.93 -0.40 0.35 16 4 C 0.06 0.96 4.13 -3.70 -0.02 0.95 16 5 N -0.45 -7.75 4.15 -172.70 -0.72 -8.46 16 6 C 0.39 6.11 6.41 -154.87 -0.99 5.11 16 7 C -0.18 -2.60 8.80 -38.66 -0.34 -2.94 16 8 C 0.15 1.94 6.78 -82.71 -0.56 1.38 16 9 C 0.58 7.01 8.10 -12.05 -0.10 6.91 16 10 N -0.83 -6.42 8.87 30.67 0.27 -6.15 16 11 O -0.52 -7.83 17.25 5.39 0.09 -7.73 16 12 N -0.52 -6.64 9.66 -8.30 -0.08 -6.72 16 13 C 0.39 5.38 8.17 -92.10 -0.75 4.63 16 14 Cl 0.02 0.26 29.26 -51.86 -1.52 -1.26 16 15 N -0.53 -8.23 8.77 -10.88 -0.10 -8.33 16 16 C 0.04 0.75 4.82 -3.70 -0.02 0.73 16 17 C 0.20 4.22 2.34 -67.49 -0.16 4.06 16 18 H 0.11 2.61 6.10 -51.93 -0.32 2.30 16 19 C -0.14 -2.95 8.97 37.16 0.33 -2.61 16 20 N -0.58 -13.28 2.73 -157.01 -0.43 -13.71 16 21 C -0.25 -6.31 8.74 -15.06 -0.13 -6.44 16 22 H 0.07 1.82 6.17 -52.49 -0.32 1.49 16 23 C 0.00 0.11 4.93 -17.43 -0.09 0.02 16 24 N -0.90 -23.86 9.77 55.49 0.54 -23.32 16 25 Si 0.90 20.66 29.59 -169.99 -5.03 15.63 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.05 0.99 7.56 -51.92 -0.39 0.60 16 30 H 0.07 1.25 7.58 -51.93 -0.39 0.86 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.30 7.67 -51.93 -0.40 0.90 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.17 2.36 6.89 -52.49 -0.36 2.00 16 35 H 0.41 2.63 8.21 -40.82 -0.34 2.30 16 36 H 0.41 2.27 8.93 -40.82 -0.36 1.91 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.24 6.70 -51.93 -0.35 0.89 16 39 H 0.08 1.94 6.90 -51.93 -0.36 1.58 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.03 0.65 7.10 -51.93 -0.37 0.28 16 42 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 353.09 15.07 5.32 5.32 Total: -1.00 -28.00 353.09 -9.57 -37.57 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.18 Total: 4.42 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: -2.74 Total: 12.74 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: -0.51 Total: -66.69 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.09 Total: -7.73 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.00 -9.57 -37.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.407 kcal (2) G-P(sol) polarization free energy of solvation -27.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds