Wall clock time and date at job start Tue Mar 31 2020 23:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.62417 * 2 1 4 4 C 1.53242 * 109.62881 * 239.62041 * 2 1 3 5 5 N 1.46900 * 109.33793 * 186.26205 * 4 2 1 6 6 C 1.38507 * 110.99910 * 187.25406 * 5 4 2 7 7 C 1.39903 * 120.50320 * 180.02562 * 6 5 4 8 8 C 1.39033 * 118.21829 * 179.97438 * 7 6 5 9 9 C 1.48439 * 120.49776 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99731 * 180.02562 * 9 8 7 11 11 O 1.21474 * 120.00335 * 359.97438 * 9 8 7 12 12 N 1.33343 * 118.99934 * 359.97438 * 8 7 6 13 13 C 1.31656 * 120.92063 * 0.02562 * 12 8 7 14 14 Cl 1.73601 * 119.01397 * 179.97438 * 13 12 8 15 15 N 1.31996 * 121.97653 * 0.02562 * 13 12 8 16 16 C 1.46900 * 111.27094 * 63.10672 * 5 4 2 17 17 C 1.53236 * 109.33656 * 296.89118 * 16 5 4 18 18 H 1.09000 * 109.63259 * 173.53743 * 17 16 5 19 19 C 1.52998 * 109.79272 * 294.02804 * 17 16 5 20 20 N 1.47078 * 109.79294 * 120.49051 * 2 1 3 21 21 C 1.36935 * 120.87763 * 350.97049 * 20 2 1 22 22 H 1.07993 * 120.00475 * 26.18518 * 21 20 2 23 23 C 1.38820 * 119.99573 * 206.18330 * 21 20 2 24 24 N 1.31612 * 119.99982 * 17.48467 * 23 21 20 25 25 Si 1.86806 * 119.99622 * 197.48542 * 23 21 20 26 26 H 1.48500 * 109.46748 * 89.99962 * 25 23 21 27 27 H 1.48493 * 109.46803 * 210.00105 * 25 23 21 28 28 H 1.48502 * 109.47200 * 329.99998 * 25 23 21 29 29 H 1.09009 * 109.46823 * 180.37905 * 1 2 3 30 30 H 1.08998 * 109.47314 * 300.37997 * 1 2 3 31 31 H 1.08996 * 109.47521 * 60.38600 * 1 2 3 32 32 H 1.09000 * 109.49526 * 66.30198 * 4 2 1 33 33 H 1.09003 * 109.49407 * 306.22093 * 4 2 1 34 34 H 1.07995 * 120.88860 * 359.97438 * 7 6 5 35 35 H 0.96996 * 119.99948 * 359.97438 * 10 9 8 36 36 H 0.97000 * 119.99776 * 179.97438 * 10 9 8 37 37 H 1.08997 * 109.49215 * 56.85183 * 16 5 4 38 38 H 1.08999 * 109.49356 * 176.93915 * 16 5 4 39 39 H 1.09000 * 109.47617 * 179.12638 * 19 17 16 40 40 H 1.09002 * 109.47068 * 299.12598 * 19 17 16 41 41 H 1.08997 * 109.47315 * 59.12112 * 19 17 16 42 42 H 0.97003 * 119.99629 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0447 -0.7300 -1.2452 5 7 3.5059 -0.8580 -1.1647 6 6 4.0253 -1.3666 -2.3437 7 6 5.4023 -1.5705 -2.4834 8 6 5.8721 -2.0836 -3.6871 9 6 7.3234 -2.3205 -3.8898 10 7 7.7679 -2.8178 -5.0610 11 8 8.1106 -2.0652 -3.0006 12 7 4.9992 -2.3608 -4.6563 13 6 3.7103 -2.1545 -4.4852 14 17 2.6178 -2.5322 -5.7804 15 7 3.2237 -1.6680 -3.3587 16 6 3.9063 -1.6804 -0.0152 17 6 3.4678 -0.9894 1.2803 18 1 3.6589 -1.6465 2.1287 19 6 4.2427 0.3178 1.4581 20 7 2.0280 -0.7022 1.1925 21 6 1.1738 -1.0782 2.1946 22 1 0.1319 -1.2597 1.9763 23 6 1.6473 -1.2260 3.4911 24 7 2.7983 -0.6891 3.8366 25 14 0.6509 -2.1869 4.7455 26 1 1.0480 -3.6172 4.7023 27 1 0.9072 -1.6427 6.1031 28 1 -0.7947 -2.0647 4.4280 29 1 -0.3633 -1.0277 0.0068 30 1 -0.3634 0.5197 0.8865 31 1 -0.3634 0.5078 -0.8934 32 1 1.7779 -0.1617 -2.1363 33 1 1.5950 -1.7215 -1.2975 34 1 6.0821 -1.3355 -1.6778 35 1 7.1393 -3.0213 -5.7712 36 1 8.7163 -2.9722 -5.1936 37 1 3.4306 -2.6587 -0.0846 38 1 4.9895 -1.8014 -0.0142 39 1 3.9158 0.8125 2.3727 40 1 5.3092 0.1021 1.5229 41 1 4.0552 0.9702 0.6052 42 1 3.1293 -0.7927 4.7425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882518534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:04 Heat of formation + Delta-G solvation = 33.048693 kcal Electronic energy + Delta-G solvation = -27873.968213 eV Core-core repulsion = 23915.660347 eV Total energy + Delta-G solvation = -3958.307866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.120 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.69232 -40.70461 -39.98891 -38.06636 -37.02751 -35.09959 -34.48684 -34.22310 -33.25331 -32.14477 -29.67966 -28.13328 -27.19364 -26.32678 -25.28154 -24.40300 -22.51853 -22.07315 -20.52116 -19.61670 -19.34397 -18.23987 -17.85316 -17.21083 -17.01036 -16.96752 -16.74767 -16.33832 -15.88312 -15.73076 -15.60972 -15.34992 -15.19849 -15.11313 -14.58625 -13.71782 -13.46306 -13.13532 -13.02100 -12.82161 -12.81351 -12.61744 -12.56439 -12.48916 -12.30977 -12.24132 -12.10337 -11.86481 -11.85769 -11.73207 -11.36179 -11.22102 -10.99583 -10.82202 -10.73340 -10.47153 -9.64327 -8.62367 -7.78974 -5.20980 -0.81955 -0.46700 0.16074 1.43618 1.49690 1.53103 1.59074 1.95449 2.14488 2.45102 2.55399 2.95879 3.23152 3.35563 3.50931 3.52353 3.81263 4.04286 4.12147 4.14899 4.30986 4.40202 4.48064 4.58188 4.61939 4.77515 4.85264 4.91032 5.02814 5.09120 5.17780 5.29800 5.39603 5.49482 5.60603 5.71190 5.75093 5.79145 5.84495 6.02251 6.18409 6.45899 6.53241 7.07575 7.23273 7.91173 8.44057 9.26701 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.003475 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.299264 B = 8054.582022 C = 9297.658813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.163 3.837 3 H 0.024 0.976 4 C 0.071 3.929 5 N -0.459 5.459 6 C 0.378 3.622 7 C -0.185 4.185 8 C 0.153 3.847 9 C 0.584 3.416 10 N -0.804 5.804 11 O -0.554 6.554 12 N -0.504 5.504 13 C 0.382 3.618 14 Cl 0.046 6.954 15 N -0.544 5.544 16 C 0.057 3.943 17 C 0.195 3.805 18 H 0.074 0.926 19 C -0.123 4.123 20 N -0.599 5.599 21 C -0.252 4.252 22 H 0.075 0.925 23 C -0.043 4.043 24 N -0.920 5.920 25 Si 0.954 3.046 26 H -0.291 1.291 27 H -0.300 1.300 28 H -0.273 1.273 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.169 0.831 35 H 0.423 0.577 36 H 0.422 0.578 37 H 0.039 0.961 38 H 0.096 0.904 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.035 0.965 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.177 -4.082 -20.292 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.057 3.943 3 H 0.042 0.958 4 C -0.057 4.057 5 N -0.174 5.174 6 C 0.136 3.864 7 C -0.212 4.212 8 C 0.009 3.991 9 C 0.365 3.635 10 N -0.369 5.369 11 O -0.431 6.431 12 N -0.227 5.227 13 C 0.086 3.914 14 Cl 0.074 6.926 15 N -0.269 5.269 16 C -0.070 4.070 17 C 0.088 3.912 18 H 0.092 0.908 19 C -0.183 4.183 20 N -0.323 5.323 21 C -0.382 4.382 22 H 0.092 0.908 23 C -0.239 4.239 24 N -0.566 5.566 25 Si 0.784 3.216 26 H -0.218 1.218 27 H -0.227 1.227 28 H -0.198 1.198 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.187 0.813 35 H 0.256 0.744 36 H 0.256 0.744 37 H 0.058 0.942 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.075 -3.635 -20.172 21.115 hybrid contribution -0.285 -0.831 1.172 1.465 sum 4.790 -4.466 -19.000 20.097 Atomic orbital electron populations 1.21680 0.93884 1.01549 1.01434 1.20698 0.94302 0.93534 0.85811 0.95846 1.22542 0.82821 1.00690 0.99630 1.58732 1.14469 1.44016 1.00180 1.20298 0.89860 0.85692 0.90576 1.22524 0.95369 1.02568 1.00736 1.21337 0.94443 0.94115 0.89219 1.17516 0.84983 0.77456 0.83510 1.43429 1.13983 1.64286 1.15182 1.90875 1.55688 1.52850 1.43713 1.67769 1.01847 1.20870 1.32210 1.22853 0.87166 0.92655 0.88732 1.98445 1.59638 1.91587 1.42909 1.67807 1.40691 1.16767 1.01615 1.22994 1.01142 0.93613 0.89224 1.20360 0.83108 0.95415 0.92291 0.90767 1.21804 0.97769 0.98614 1.00068 1.44543 1.03573 1.65569 1.18605 1.19455 0.93342 1.38401 0.87035 0.90766 1.25578 0.98746 1.01345 0.98236 1.70140 1.22330 1.46111 1.18056 0.85468 0.78924 0.78521 0.78679 1.21847 1.22732 1.19830 0.93095 0.93309 0.90688 0.88985 0.93705 0.81332 0.74443 0.74433 0.94212 0.88583 0.93712 0.93897 0.94604 0.94413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 7.94 71.98 0.57 -3.83 16 2 C 0.16 6.32 3.25 44.96 0.15 6.47 16 3 H 0.02 0.98 7.63 -2.38 -0.02 0.97 16 4 C 0.07 2.40 4.13 86.38 0.36 2.76 16 5 N -0.46 -15.28 4.15 -700.29 -2.91 -18.19 16 6 C 0.38 11.34 6.41 133.30 0.85 12.20 16 7 C -0.19 -5.03 8.80 22.86 0.20 -4.83 16 8 C 0.15 3.69 6.78 41.83 0.28 3.98 16 9 C 0.58 12.71 8.10 86.96 0.70 13.42 16 10 N -0.80 -10.03 8.87 -175.20 -1.55 -11.58 16 11 O -0.55 -15.80 17.25 -3.63 -0.06 -15.86 16 12 N -0.50 -11.50 9.66 -180.19 -1.74 -13.24 16 13 C 0.38 9.59 8.17 180.86 1.48 11.07 16 14 Cl 0.05 0.93 29.26 -2.72 -0.08 0.86 16 15 N -0.54 -15.72 8.77 -188.34 -1.65 -17.37 16 16 C 0.06 2.02 4.82 86.38 0.42 2.43 16 17 C 0.20 8.54 2.34 44.96 0.11 8.65 16 18 H 0.07 3.76 6.10 -2.39 -0.01 3.74 16 19 C -0.12 -5.29 8.97 71.98 0.65 -4.64 16 20 N -0.60 -27.60 2.73 -650.65 -1.78 -29.38 16 21 C -0.25 -12.81 8.74 84.04 0.73 -12.08 16 22 H 0.07 3.69 6.17 -2.91 -0.02 3.67 16 23 C -0.04 -2.26 4.93 84.87 0.42 -1.84 16 24 N -0.92 -50.51 9.77 21.65 0.21 -50.29 16 25 Si 0.95 43.29 29.59 68.60 2.03 45.32 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 27 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 28 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 29 H 0.05 1.78 7.56 -2.38 -0.02 1.76 16 30 H 0.05 1.83 7.58 -2.39 -0.02 1.81 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.09 2.87 7.67 -2.39 -0.02 2.85 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.17 4.55 6.89 -2.91 -0.02 4.53 16 35 H 0.42 3.94 8.21 -92.71 -0.76 3.18 16 36 H 0.42 3.42 8.93 -92.71 -0.83 2.59 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.10 3.02 6.70 -2.39 -0.02 3.01 16 39 H 0.04 2.22 6.90 -2.39 -0.02 2.21 16 40 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.03 1.46 7.10 -2.39 -0.02 1.45 16 42 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 Total: -1.00 -60.79 353.09 -1.11 -61.90 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -0.49 Total: 14.10 kcal Atomic # 6 Polarization: 26.83 SS G_CDS: 6.92 Total: 33.74 kcal Atomic # 7 Polarization: -130.64 SS G_CDS: -9.42 Total: -140.07 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.06 Total: -15.86 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 17 Polarization: 0.93 SS G_CDS: -0.08 Total: 0.86 kcal Total: -60.79 -1.11 -61.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.953 kcal (2) G-P(sol) polarization free energy of solvation -60.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds