Wall clock time and date at job start Tue Mar 31 2020 22:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 H 1.08990 * 109.51289 * 305.09911 * 3 2 1 5 5 C 1.53298 * 109.51306 * 184.99844 * 3 2 1 6 6 N 1.47153 * 108.38758 * 187.77645 * 5 3 2 7 7 S 1.65597 * 120.97991 * 230.51663 * 6 5 3 8 8 O 1.42096 * 106.40357 * 336.45178 * 7 6 5 9 9 O 1.42104 * 106.39740 * 203.53617 * 7 6 5 10 10 C 1.76196 * 107.22017 * 89.99618 * 7 6 5 11 11 C 1.38237 * 119.99995 * 90.00186 * 10 7 6 12 12 C 1.38235 * 120.00001 * 179.97438 * 11 10 7 13 13 C 1.38235 * 119.99866 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99856 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47376 * 90.00232 * 14 13 12 16 16 H 1.08002 * 119.99685 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00216 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00069 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99806 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46845 * 90.00621 * 19 17 15 21 21 H 1.48503 * 109.47399 * 210.00111 * 19 17 15 22 22 H 1.48498 * 109.47295 * 330.00717 * 19 17 15 23 23 C 1.38235 * 120.00101 * 0.25800 * 13 12 11 24 24 C 1.38234 * 119.99947 * 359.49437 * 23 13 12 25 25 C 1.47154 * 118.03398 * 50.78395 * 6 5 3 26 26 C 1.53717 * 108.16158 * 309.16036 * 25 6 5 27 27 O 1.42956 * 109.14751 * 52.53995 * 26 25 6 28 28 H 1.09003 * 109.47070 * 299.99962 * 1 2 3 29 29 H 1.08999 * 109.46712 * 59.99613 * 1 2 3 30 30 H 1.08999 * 109.47298 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47088 * 239.99542 * 2 1 3 32 32 H 1.09004 * 109.47180 * 119.99844 * 2 1 3 33 33 H 1.08995 * 109.68259 * 68.04820 * 5 3 2 34 34 H 1.09009 * 109.68030 * 307.49803 * 5 3 2 35 35 H 1.07993 * 120.00131 * 359.97438 * 11 10 7 36 36 H 1.08002 * 120.00208 * 180.02562 * 12 11 10 37 37 H 1.08999 * 109.47354 * 330.00037 * 14 13 12 38 38 H 1.09001 * 109.47157 * 210.00114 * 14 13 12 39 39 H 0.97000 * 119.99667 * 179.97438 * 18 17 15 40 40 H 1.08006 * 119.99906 * 179.73045 * 23 13 12 41 41 H 1.07999 * 120.00020 * 180.25683 * 24 23 13 42 42 H 1.08994 * 109.68149 * 68.94369 * 25 6 5 43 43 H 1.09002 * 109.67404 * 189.49498 * 25 6 5 44 44 H 1.08998 * 109.65521 * 292.57027 * 26 25 6 45 45 H 1.09004 * 109.47945 * 172.40178 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9826 -0.8405 5 6 3.5678 1.4454 -0.1259 6 7 4.0466 2.8238 0.0645 7 16 5.0853 3.5227 -1.0195 8 8 5.7575 2.4566 -1.6758 9 8 5.7645 4.5541 -0.3164 10 6 4.1017 4.3201 -2.2447 11 6 3.7194 5.6376 -2.0743 12 6 2.9481 6.2633 -3.0358 13 6 2.5589 5.5715 -4.1675 14 6 1.7176 6.2535 -5.2154 15 6 2.6160 6.9093 -6.2323 16 1 3.6889 6.8395 -6.1297 17 6 2.0684 7.5992 -7.2930 18 7 2.8524 8.1719 -8.1801 19 14 0.2127 7.7204 -7.4700 20 1 -0.2749 8.9272 -6.7552 21 1 -0.1419 7.8203 -8.9087 22 1 -0.4203 6.5102 -6.8870 23 6 2.9363 4.2523 -4.3351 24 6 3.7118 3.6281 -3.3760 25 6 3.5798 3.5606 1.2497 26 6 2.0472 3.4565 1.3057 27 8 1.6674 2.0807 1.2238 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8553 1.0903 -1.1155 34 1 4.0003 0.7979 0.6370 35 1 4.0231 6.1779 -1.1900 36 1 2.6497 7.2928 -2.9029 37 1 1.0911 7.0099 -4.7428 38 1 1.0859 5.5161 -5.7107 39 1 2.4670 8.6569 -8.9265 40 1 2.6285 3.7104 -5.2173 41 1 4.0102 2.5986 -3.5090 42 1 4.0135 3.1226 2.1486 43 1 3.8753 4.6069 1.1712 44 1 1.6117 4.0048 0.4704 45 1 1.6883 3.8781 2.2446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884913475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:39 Heat of formation + Delta-G solvation = -100.717456 kcal Electronic energy + Delta-G solvation = -27930.116327 eV Core-core repulsion = 24039.299225 eV Total energy + Delta-G solvation = -3890.817102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.73758 -38.94734 -37.32784 -35.88388 -35.19370 -34.30141 -33.72802 -31.78520 -30.71803 -30.41569 -28.01911 -27.35456 -24.63697 -23.57408 -22.52214 -22.46637 -21.20870 -20.68861 -19.10015 -18.09664 -17.47893 -16.99137 -16.94624 -16.26228 -15.65513 -15.22831 -15.16018 -15.10767 -14.51284 -14.41809 -14.30427 -14.00582 -13.85248 -13.53931 -13.25638 -12.84266 -12.68105 -12.62969 -12.33447 -12.26235 -12.11818 -11.94409 -11.87024 -11.82819 -11.79258 -11.38278 -11.26868 -11.14542 -10.97533 -10.65337 -10.58037 -10.52041 -10.27496 -10.07729 -9.58141 -9.08999 -8.74080 -8.69950 -8.49839 -6.21687 -4.23552 0.31391 1.19553 1.66779 2.79737 3.17530 3.26227 3.26686 3.41603 3.67645 3.97251 4.11878 4.27552 4.42098 4.44571 4.60583 4.76492 4.79895 4.94171 4.98676 5.02722 5.10112 5.11902 5.13312 5.21203 5.29660 5.41775 5.49588 5.51769 5.62553 5.66390 5.68004 5.74834 5.76466 5.86496 6.03766 6.09553 6.16875 6.18653 6.39561 6.64588 6.64733 6.76817 6.87252 7.23137 7.24874 7.49821 8.31049 8.81706 9.36377 10.90813 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013571 B = 0.003294 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.746984 B = 8498.777067 C = 9535.174459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.075 3.925 4 H 0.068 0.932 5 C 0.093 3.907 6 N -1.004 6.004 7 S 2.694 3.306 8 O -0.959 6.959 9 O -0.959 6.959 10 C -0.702 4.702 11 C -0.023 4.023 12 C -0.142 4.142 13 C 0.032 3.968 14 C 0.006 3.994 15 C -0.521 4.521 16 H 0.075 0.925 17 C 0.073 3.927 18 N -0.894 5.894 19 Si 0.879 3.121 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.265 1.265 23 C -0.142 4.142 24 C -0.023 4.023 25 C 0.088 3.912 26 C 0.048 3.952 27 O -0.372 6.372 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.029 0.971 38 H 0.034 0.966 39 H 0.267 0.733 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.668 -14.269 19.923 24.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.016 3.984 4 H 0.086 0.914 5 C -0.032 4.032 6 N -0.841 5.841 7 S 2.788 3.212 8 O -0.949 6.949 9 O -0.949 6.949 10 C -0.791 4.791 11 C -0.042 4.042 12 C -0.161 4.161 13 C 0.031 3.969 14 C -0.031 4.031 15 C -0.559 4.559 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.531 5.531 19 Si 0.706 3.294 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.190 1.190 23 C -0.161 4.161 24 C -0.042 4.042 25 C -0.038 4.038 26 C -0.031 4.031 27 O -0.291 6.291 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.078 0.922 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.821 -14.287 19.949 24.699 hybrid contribution -1.309 0.719 -0.932 1.761 sum -4.130 -13.568 19.017 23.723 Atomic orbital electron populations 1.21705 0.94902 1.01633 1.02458 1.21529 0.97086 0.93682 1.03106 1.22565 0.93167 0.94819 0.87849 0.91427 1.22148 0.95091 0.82144 1.03838 1.57949 1.66674 1.22630 1.36875 1.01814 0.73333 0.73177 0.72840 1.93555 1.70794 1.55255 1.75322 1.93556 1.70499 1.58059 1.72813 1.30435 1.24705 1.07083 1.16896 1.20755 0.92966 0.91999 0.98505 1.21225 1.00054 1.00441 0.94385 1.20708 0.90829 0.92549 0.92770 1.18987 0.95233 0.95916 0.92957 1.20813 0.94536 1.33398 1.07125 0.90671 1.24985 0.98125 0.94627 0.95261 1.69888 1.35270 1.34460 1.13513 0.86791 0.85871 0.79122 0.77638 1.20013 1.21021 1.18959 1.21221 1.00048 0.95463 0.99347 1.20755 0.92918 0.98897 0.91644 1.22206 0.95728 0.97685 0.88153 1.23044 0.93499 0.83433 1.03102 1.87933 1.79683 1.23678 1.37783 0.91943 0.92729 0.92654 0.90144 0.90834 0.88266 0.90075 0.85208 0.85195 0.95235 0.94799 0.92331 0.85198 0.85221 0.90062 0.88201 0.92240 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.81 37.16 0.36 -0.72 16 2 C -0.12 -0.82 5.64 -26.73 -0.15 -0.97 16 3 C 0.08 0.66 2.78 -26.58 -0.07 0.58 16 4 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 5 C 0.09 0.85 5.85 -3.53 -0.02 0.83 16 6 N -1.00 -10.57 3.34 -112.81 -0.38 -10.95 16 7 S 2.69 37.16 5.70 -107.50 -0.61 36.55 16 8 O -0.96 -15.19 16.09 -57.17 -0.92 -16.11 16 9 O -0.96 -15.15 16.08 -57.17 -0.92 -16.07 16 10 C -0.70 -10.65 5.97 -39.58 -0.24 -10.89 16 11 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 12 C -0.14 -2.50 9.70 -39.58 -0.38 -2.88 16 13 C 0.03 0.62 5.07 -104.62 -0.53 0.09 16 14 C 0.01 0.14 4.17 -29.03 -0.12 0.02 16 15 C -0.52 -14.20 9.65 -34.44 -0.33 -14.53 16 16 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 17 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 18 N -0.89 -26.64 13.96 55.43 0.77 -25.86 16 19 Si 0.88 20.43 27.47 -169.99 -4.67 15.76 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 23 C -0.14 -2.50 9.70 -39.58 -0.38 -2.88 16 24 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 25 C 0.09 0.76 6.60 -3.31 -0.02 0.74 16 26 C 0.05 0.38 7.00 37.53 0.26 0.65 16 27 O -0.37 -3.54 9.93 -35.23 -0.35 -3.89 16 28 H 0.06 0.50 7.83 -51.93 -0.41 0.09 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.86 7.25 -51.93 -0.38 0.48 16 34 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.13 1.70 7.62 -52.49 -0.40 1.30 16 36 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 37 H 0.03 0.64 7.51 -51.93 -0.39 0.25 16 38 H 0.03 0.74 7.14 -51.93 -0.37 0.37 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.13 2.14 8.06 -52.48 -0.42 1.72 16 41 H 0.13 1.71 7.62 -52.49 -0.40 1.31 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.10 0.82 7.24 -51.93 -0.38 0.44 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 377.67 15.07 5.69 5.69 Total: -1.00 -33.55 377.67 -10.82 -44.37 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.96 Total: 0.00 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: -2.48 Total: -29.50 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.40 Total: -36.81 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -2.19 Total: -36.06 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Atomic # 16 Polarization: 37.16 SS G_CDS: -0.61 Total: 36.55 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.55 -10.82 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884913475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.349 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds