Wall clock time and date at job start Tue Mar 31 2020 22:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 H 1.08990 * 109.51289 * 305.09911 * 3 2 1 5 5 C 1.53298 * 109.51306 * 184.99844 * 3 2 1 6 6 N 1.47153 * 108.38758 * 187.77645 * 5 3 2 7 7 S 1.65597 * 120.97991 * 230.51663 * 6 5 3 8 8 O 1.42096 * 106.40357 * 336.45178 * 7 6 5 9 9 O 1.42104 * 106.39740 * 203.53617 * 7 6 5 10 10 C 1.76196 * 107.22017 * 89.99618 * 7 6 5 11 11 C 1.38237 * 119.99995 * 90.00186 * 10 7 6 12 12 C 1.38235 * 120.00001 * 179.97438 * 11 10 7 13 13 C 1.38235 * 119.99866 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99856 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47376 * 90.00232 * 14 13 12 16 16 H 1.08002 * 119.99685 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00216 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00069 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99806 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46845 * 90.00621 * 19 17 15 21 21 H 1.48503 * 109.47399 * 210.00111 * 19 17 15 22 22 H 1.48498 * 109.47295 * 330.00717 * 19 17 15 23 23 C 1.38235 * 120.00101 * 0.25800 * 13 12 11 24 24 C 1.38234 * 119.99947 * 359.49437 * 23 13 12 25 25 C 1.47154 * 118.03398 * 50.78395 * 6 5 3 26 26 C 1.53717 * 108.16158 * 309.16036 * 25 6 5 27 27 O 1.42956 * 109.14751 * 52.53995 * 26 25 6 28 28 H 1.09003 * 109.47070 * 299.99962 * 1 2 3 29 29 H 1.08999 * 109.46712 * 59.99613 * 1 2 3 30 30 H 1.08999 * 109.47298 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47088 * 239.99542 * 2 1 3 32 32 H 1.09004 * 109.47180 * 119.99844 * 2 1 3 33 33 H 1.08995 * 109.68259 * 68.04820 * 5 3 2 34 34 H 1.09009 * 109.68030 * 307.49803 * 5 3 2 35 35 H 1.07993 * 120.00131 * 359.97438 * 11 10 7 36 36 H 1.08002 * 120.00208 * 180.02562 * 12 11 10 37 37 H 1.08999 * 109.47354 * 330.00037 * 14 13 12 38 38 H 1.09001 * 109.47157 * 210.00114 * 14 13 12 39 39 H 0.97000 * 119.99667 * 179.97438 * 18 17 15 40 40 H 1.08006 * 119.99906 * 179.73045 * 23 13 12 41 41 H 1.07999 * 120.00020 * 180.25683 * 24 23 13 42 42 H 1.08994 * 109.68149 * 68.94369 * 25 6 5 43 43 H 1.09002 * 109.67404 * 189.49498 * 25 6 5 44 44 H 1.08998 * 109.65521 * 292.57027 * 26 25 6 45 45 H 1.09004 * 109.47945 * 172.40178 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9826 -0.8405 5 6 3.5678 1.4454 -0.1259 6 7 4.0466 2.8238 0.0645 7 16 5.0853 3.5227 -1.0195 8 8 5.7575 2.4566 -1.6758 9 8 5.7645 4.5541 -0.3164 10 6 4.1017 4.3201 -2.2447 11 6 3.7194 5.6376 -2.0743 12 6 2.9481 6.2633 -3.0358 13 6 2.5589 5.5715 -4.1675 14 6 1.7176 6.2535 -5.2154 15 6 2.6160 6.9093 -6.2323 16 1 3.6889 6.8395 -6.1297 17 6 2.0684 7.5992 -7.2930 18 7 2.8524 8.1719 -8.1801 19 14 0.2127 7.7204 -7.4700 20 1 -0.2749 8.9272 -6.7552 21 1 -0.1419 7.8203 -8.9087 22 1 -0.4203 6.5102 -6.8870 23 6 2.9363 4.2523 -4.3351 24 6 3.7118 3.6281 -3.3760 25 6 3.5798 3.5606 1.2497 26 6 2.0472 3.4565 1.3057 27 8 1.6674 2.0807 1.2238 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8553 1.0903 -1.1155 34 1 4.0003 0.7979 0.6370 35 1 4.0231 6.1779 -1.1900 36 1 2.6497 7.2928 -2.9029 37 1 1.0911 7.0099 -4.7428 38 1 1.0859 5.5161 -5.7107 39 1 2.4670 8.6569 -8.9265 40 1 2.6285 3.7104 -5.2173 41 1 4.0102 2.5986 -3.5090 42 1 4.0135 3.1226 2.1486 43 1 3.8753 4.6069 1.1712 44 1 1.6117 4.0048 0.4704 45 1 1.6883 3.8781 2.2446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884913475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:38 Heat of formation + Delta-G solvation = -122.960751 kcal Electronic energy + Delta-G solvation = -27931.080869 eV Core-core repulsion = 24039.299225 eV Total energy + Delta-G solvation = -3891.781644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.43191 -40.27876 -38.50891 -37.07131 -35.95773 -35.56496 -34.90972 -33.57675 -32.01444 -31.05548 -29.73862 -28.07853 -25.31931 -25.29134 -23.78522 -23.21232 -22.32070 -21.77638 -20.12284 -19.13945 -19.04630 -18.58375 -17.70429 -17.20383 -16.79386 -16.43749 -16.21376 -16.00844 -15.82552 -15.52590 -15.49074 -15.06325 -14.63083 -14.55147 -14.51834 -14.22957 -14.13192 -13.65601 -13.52337 -13.48444 -13.34000 -13.29678 -12.97210 -12.71424 -12.62105 -12.56375 -12.42552 -12.10667 -11.97117 -11.95786 -11.82086 -11.76819 -11.66946 -11.29667 -11.16919 -10.84287 -10.00658 -9.99443 -9.82178 -8.35205 -6.42741 -0.78461 -0.12570 0.35209 1.35127 1.36883 1.48221 1.80086 2.31171 2.49823 2.70129 2.80845 2.99247 3.10966 3.65110 3.69950 3.82344 3.92276 3.97714 4.04618 4.12412 4.17210 4.29682 4.37012 4.42492 4.43371 4.50021 4.62874 4.69016 4.74569 4.81236 4.83220 4.87290 4.97394 5.00291 5.04771 5.09236 5.13167 5.16811 5.24838 5.29041 5.41394 5.47385 5.48409 5.74202 5.89799 6.17067 6.23184 6.63898 7.21366 8.81284 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013571 B = 0.003294 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.746984 B = 8498.777067 C = 9535.174459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.075 3.925 4 H 0.058 0.942 5 C 0.086 3.914 6 N -0.996 5.996 7 S 2.715 3.285 8 O -0.978 6.978 9 O -0.978 6.978 10 C -0.701 4.701 11 C -0.022 4.022 12 C -0.153 4.153 13 C -0.002 4.002 14 C 0.012 3.988 15 C -0.527 4.527 16 H 0.026 0.974 17 C 0.010 3.990 18 N -0.947 5.947 19 Si 0.953 3.047 20 H -0.264 1.264 21 H -0.284 1.284 22 H -0.242 1.242 23 C -0.153 4.153 24 C -0.022 4.022 25 C 0.080 3.920 26 C 0.046 3.954 27 O -0.382 6.382 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.155 0.845 36 H 0.135 0.865 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.269 0.731 40 H 0.135 0.865 41 H 0.154 0.846 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.053 0.947 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.082 -15.706 22.031 27.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.016 3.984 4 H 0.076 0.924 5 C -0.038 4.038 6 N -0.836 5.836 7 S 2.808 3.192 8 O -0.969 6.969 9 O -0.968 6.968 10 C -0.788 4.788 11 C -0.041 4.041 12 C -0.171 4.171 13 C -0.002 4.002 14 C -0.025 4.025 15 C -0.565 4.565 16 H 0.044 0.956 17 C -0.188 4.188 18 N -0.587 5.587 19 Si 0.776 3.224 20 H -0.188 1.188 21 H -0.209 1.209 22 H -0.165 1.165 23 C -0.171 4.171 24 C -0.041 4.041 25 C -0.044 4.044 26 C -0.032 4.032 27 O -0.301 6.301 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.173 0.827 36 H 0.153 0.847 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.153 0.847 41 H 0.172 0.828 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.071 0.929 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.242 -15.725 22.063 27.423 hybrid contribution -0.749 1.097 -1.464 1.976 sum -4.990 -14.628 20.599 25.753 Atomic orbital electron populations 1.21687 0.95117 1.02106 1.01668 1.21566 0.96853 0.92782 1.04078 1.22610 0.92787 0.95632 0.87406 0.92361 1.22383 0.95445 0.81317 1.04700 1.57717 1.66337 1.23177 1.36385 1.01156 0.73179 0.72446 0.72432 1.93526 1.71649 1.55617 1.76071 1.93529 1.71333 1.58982 1.72956 1.30848 1.23573 1.07119 1.17252 1.21028 0.92045 0.92266 0.98753 1.21362 1.00537 1.00809 0.94429 1.20601 0.92579 0.93692 0.93316 1.18826 0.94938 0.96115 0.92633 1.21058 0.93131 1.33631 1.08655 0.95557 1.26007 1.04005 0.94086 0.94698 1.70057 1.37970 1.36055 1.14611 0.85617 0.78769 0.80311 0.77733 1.18847 1.20940 1.16497 1.21356 1.00554 0.95065 1.00158 1.21022 0.92033 1.00005 0.91076 1.22472 0.96258 0.97992 0.87701 1.23170 0.92980 0.82922 1.04129 1.87931 1.79834 1.24310 1.38021 0.92924 0.93296 0.91575 0.88806 0.90224 0.87857 0.88580 0.82716 0.84671 0.94194 0.94084 0.92185 0.84720 0.82807 0.88521 0.87676 0.92867 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.81 71.98 0.71 -1.19 16 2 C -0.11 -1.37 5.64 30.59 0.17 -1.20 16 3 C 0.07 1.15 2.78 30.69 0.09 1.24 16 4 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 5 C 0.09 1.36 5.85 86.35 0.51 1.87 16 6 N -1.00 -18.69 3.34 -510.84 -1.70 -20.39 16 7 S 2.72 69.99 5.70 -56.49 -0.32 69.67 16 8 O -0.98 -29.29 16.09 -128.00 -2.06 -31.35 16 9 O -0.98 -29.15 16.08 -128.00 -2.06 -31.20 16 10 C -0.70 -20.31 5.97 22.27 0.13 -20.17 16 11 C -0.02 -0.65 9.52 22.27 0.21 -0.44 16 12 C -0.15 -5.33 9.70 22.27 0.22 -5.11 16 13 C 0.00 -0.06 5.07 -19.87 -0.10 -0.16 16 14 C 0.01 0.54 4.17 29.10 0.12 0.66 16 15 C -0.53 -29.65 9.65 25.60 0.25 -29.40 16 16 H 0.03 1.68 7.98 -2.91 -0.02 1.65 16 17 C 0.01 0.55 5.47 84.65 0.46 1.01 16 18 N -0.95 -58.41 13.96 21.45 0.30 -58.11 16 19 Si 0.95 42.04 27.47 68.60 1.88 43.93 16 20 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.24 -9.67 6.54 99.48 0.65 -9.02 16 23 C -0.15 -5.34 9.70 22.27 0.22 -5.13 16 24 C -0.02 -0.67 9.52 22.27 0.21 -0.46 16 25 C 0.08 1.18 6.60 86.50 0.57 1.76 16 26 C 0.05 0.63 7.00 72.22 0.51 1.14 16 27 O -0.38 -6.40 9.93 -148.98 -1.48 -7.88 16 28 H 0.05 0.77 7.83 -2.39 -0.02 0.75 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.10 1.55 7.25 -2.39 -0.02 1.53 16 34 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.16 3.76 7.62 -2.91 -0.02 3.74 16 36 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 37 H 0.04 1.68 7.51 -2.39 -0.02 1.66 16 38 H 0.04 1.75 7.14 -2.39 -0.02 1.74 16 39 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.13 4.44 8.06 -2.91 -0.02 4.41 16 41 H 0.15 3.78 7.62 -2.91 -0.02 3.76 16 42 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.11 1.45 7.24 -2.39 -0.02 1.43 16 44 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -73.76 377.67 -0.26 -74.02 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.92 Total: 16.91 kcal Atomic # 6 Polarization: -59.85 SS G_CDS: 4.27 Total: -55.59 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -1.40 Total: -78.50 kcal Atomic # 8 Polarization: -64.84 SS G_CDS: -5.60 Total: -70.43 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.88 Total: 43.93 kcal Atomic # 16 Polarization: 69.99 SS G_CDS: -0.32 Total: 69.67 kcal Total: -73.76 -0.26 -74.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884913475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.942 kcal (2) G-P(sol) polarization free energy of solvation -73.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds