Wall clock time and date at job start Tue Mar 31 2020 23:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.51066 * 2 1 4 4 C 1.52878 * 109.58256 * 239.98571 * 2 1 3 5 5 N 1.47150 * 108.60396 * 187.92216 * 4 2 1 6 6 S 1.65606 * 120.97969 * 230.49603 * 5 4 2 7 7 O 1.42099 * 106.40007 * 156.18171 * 6 5 4 8 8 O 1.42098 * 106.40005 * 23.26221 * 6 5 4 9 9 C 1.76199 * 107.21944 * 269.72034 * 6 5 4 10 10 C 1.38237 * 119.99795 * 89.99952 * 9 6 5 11 11 C 1.38240 * 119.99892 * 180.02562 * 10 9 6 12 12 C 1.38238 * 119.99966 * 359.95674 * 11 10 9 13 13 C 1.50698 * 119.99845 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46993 * 90.00057 * 13 12 11 15 15 H 1.07991 * 120.00449 * 359.72131 * 14 13 12 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48493 * 109.47326 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99892 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99603 * 18 16 14 22 22 C 1.38240 * 119.99731 * 0.27223 * 12 11 10 23 23 C 1.38233 * 120.00248 * 359.52316 * 22 12 11 24 24 C 1.47151 * 118.04012 * 50.22687 * 5 4 2 25 25 H 1.08997 * 109.68603 * 189.99233 * 24 5 4 26 26 C 1.53004 * 109.68091 * 69.47013 * 24 5 4 27 27 C 1.53299 * 108.38397 * 309.71415 * 24 5 4 28 28 O 1.42957 * 109.51293 * 120.10121 * 2 1 3 29 29 H 1.09004 * 109.46770 * 299.89945 * 1 2 3 30 30 H 1.08996 * 109.47097 * 59.89600 * 1 2 3 31 31 H 1.08998 * 109.46654 * 179.89744 * 1 2 3 32 32 H 1.08997 * 109.61912 * 68.10135 * 4 2 1 33 33 H 1.09000 * 109.52456 * 307.68320 * 4 2 1 34 34 H 1.07997 * 120.00113 * 359.97438 * 10 9 6 35 35 H 1.07993 * 119.99866 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47083 * 329.99473 * 13 12 11 37 37 H 1.09001 * 109.46875 * 209.99736 * 13 12 11 38 38 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 39 39 H 1.07995 * 119.99782 * 179.72830 * 22 12 11 40 40 H 1.07998 * 120.00399 * 180.25094 * 23 22 12 41 41 H 1.09000 * 109.46455 * 60.00578 * 26 24 5 42 42 H 1.09003 * 109.46854 * 180.02562 * 26 24 5 43 43 H 1.08994 * 109.47354 * 300.00891 * 26 24 5 44 44 H 1.08995 * 109.51200 * 172.22539 * 27 24 5 45 45 H 1.09004 * 109.51045 * 292.32971 * 27 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0424 -0.7205 -1.2472 5 7 3.5012 -0.8766 -1.1332 6 16 4.5065 -0.4190 -2.3671 7 8 5.7745 -0.1649 -1.7782 8 8 3.7946 0.5479 -3.1270 9 6 4.7165 -1.8196 -3.4154 10 6 3.8506 -2.0276 -4.4726 11 6 4.0150 -3.1267 -5.2948 12 6 5.0459 -4.0173 -5.0602 13 6 5.2255 -5.2151 -5.9568 14 6 6.1355 -4.8533 -7.1022 15 1 6.5395 -3.8545 -7.1762 16 6 6.4482 -5.7960 -8.0586 17 7 5.9567 -7.0125 -7.9681 18 14 7.5701 -5.3453 -9.4825 19 1 8.9804 -5.6198 -9.1077 20 1 7.2078 -6.1551 -10.6735 21 1 7.4136 -3.9028 -9.7986 22 6 5.9090 -3.8117 -4.0000 23 6 5.7471 -2.7104 -3.1805 24 6 4.0407 -1.4456 0.1120 25 1 5.1252 -1.3374 0.1254 26 6 3.6695 -2.9270 0.2048 27 6 3.4313 -0.6848 1.2951 28 8 2.0075 -0.6758 1.1657 29 1 -0.3633 0.5123 0.8909 30 1 -0.3633 0.5154 -0.8890 31 1 -0.3632 -1.0277 -0.0018 32 1 1.8043 -0.1323 -2.1334 33 1 1.5729 -1.7015 -1.3200 34 1 3.0451 -1.3319 -4.6558 35 1 3.3383 -3.2894 -6.1205 36 1 4.2562 -5.5256 -6.3468 37 1 5.6666 -6.0328 -5.3867 38 1 6.1770 -7.6758 -8.6408 39 1 6.7117 -4.5099 -3.8141 40 1 6.4239 -2.5476 -2.3547 41 1 4.0890 -3.4607 -0.6480 42 1 4.0703 -3.3449 1.1283 43 1 2.5845 -3.0307 0.2003 44 1 3.7092 -1.1776 2.2268 45 1 3.8037 0.3396 1.2999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884921804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:16 Heat of formation + Delta-G solvation = -102.171662 kcal Electronic energy + Delta-G solvation = -27964.266828 eV Core-core repulsion = 24073.386666 eV Total energy + Delta-G solvation = -3890.880161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.92309 -38.82997 -37.31586 -35.85777 -35.42312 -33.70187 -33.62906 -31.58332 -30.61469 -30.21296 -27.46516 -26.60004 -26.20819 -23.74786 -22.82854 -22.35267 -20.96418 -20.59099 -18.92603 -18.11875 -17.44686 -16.98190 -16.46856 -16.09623 -15.67211 -15.21523 -15.18975 -15.02249 -14.43033 -14.39858 -14.26351 -13.82632 -13.53289 -13.14228 -12.88879 -12.67927 -12.66538 -12.59276 -12.31058 -12.25667 -12.08790 -12.03789 -12.00621 -11.73622 -11.54524 -11.50973 -11.35234 -11.01840 -10.93745 -10.70636 -10.53361 -10.50988 -10.35612 -9.76988 -9.67809 -9.06434 -8.62071 -8.55811 -8.39901 -6.19105 -4.24213 0.36496 1.29684 1.76433 2.83207 3.22883 3.29478 3.33802 3.41486 3.70605 4.05220 4.16225 4.35040 4.41715 4.47481 4.68258 4.77584 4.79827 4.97894 5.00938 5.12386 5.18542 5.19514 5.25960 5.29441 5.34953 5.41746 5.43596 5.59375 5.66018 5.69309 5.76256 5.81313 5.88190 5.93567 6.09396 6.21844 6.28187 6.30097 6.49559 6.80759 6.86851 6.87938 7.26693 7.40376 7.56434 7.75963 8.11082 8.80573 9.40852 10.90930 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021912 B = 0.002751 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.534977 B =10174.070263 C =10275.895299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.077 3.923 3 H 0.064 0.936 4 C 0.088 3.912 5 N -0.998 5.998 6 S 2.693 3.307 7 O -0.962 6.962 8 O -0.962 6.962 9 C -0.702 4.702 10 C -0.023 4.023 11 C -0.145 4.145 12 C 0.027 3.973 13 C 0.039 3.961 14 C -0.518 4.518 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.899 3.101 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.145 4.145 23 C -0.023 4.023 24 C 0.109 3.891 25 H 0.110 0.890 26 C -0.161 4.161 27 C 0.059 3.941 28 O -0.373 6.373 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.095 11.391 18.643 23.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.017 3.983 3 H 0.082 0.918 4 C -0.038 4.038 5 N -0.836 5.836 6 S 2.789 3.211 7 O -0.952 6.952 8 O -0.952 6.952 9 C -0.792 4.792 10 C -0.043 4.043 11 C -0.164 4.164 12 C 0.027 3.973 13 C 0.003 3.997 14 C -0.556 4.556 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.164 4.164 23 C -0.042 4.042 24 C 0.003 3.997 25 H 0.128 0.872 26 C -0.220 4.220 27 C -0.020 4.020 28 O -0.291 6.291 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.124 0.876 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.849 11.975 18.568 23.800 hybrid contribution 0.819 -0.574 -1.413 1.730 sum -8.031 11.401 17.155 22.108 Atomic orbital electron populations 1.21747 0.92189 1.03354 1.02930 1.22339 0.95439 0.95361 0.85117 0.91846 1.22111 0.79451 1.02260 0.99947 1.57995 1.16828 1.79547 1.29211 1.01735 0.72699 0.74154 0.72525 1.93540 1.40243 1.84309 1.77133 1.93541 1.73688 1.57466 1.70533 1.30332 1.08783 1.23378 1.16729 1.20748 0.95725 0.95860 0.91917 1.21243 0.99888 0.95054 1.00193 1.21119 0.89331 0.95673 0.91187 1.18537 0.98486 0.89598 0.93102 1.20967 1.29148 0.97869 1.07628 0.92296 1.25006 0.96125 0.94870 0.98128 1.69947 1.44198 1.03297 1.35512 0.86476 0.80772 0.78642 0.81510 1.20433 1.21004 1.19691 1.21241 1.00589 0.98344 0.96197 1.20743 0.93719 0.92092 0.97685 1.21757 0.99662 0.94355 0.83891 0.87177 1.22092 1.03108 0.94220 1.02569 1.22914 0.81348 0.99874 0.97826 1.87941 1.20701 1.77480 1.43024 0.91451 0.90590 0.91437 0.87887 0.90262 0.85403 0.85338 0.94728 0.94700 0.92609 0.85338 0.85404 0.91775 0.91334 0.91446 0.87558 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.57 37.16 0.36 -0.59 16 2 C 0.08 0.66 3.39 -26.79 -0.09 0.57 16 3 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.09 0.83 5.59 -3.75 -0.02 0.81 16 5 N -1.00 -10.95 3.04 -106.27 -0.32 -11.28 16 6 S 2.69 38.04 5.75 -107.50 -0.62 37.42 16 7 O -0.96 -15.34 15.90 -57.17 -0.91 -16.25 16 8 O -0.96 -15.34 15.90 -57.17 -0.91 -16.24 16 9 C -0.70 -11.09 5.97 -39.58 -0.24 -11.33 16 10 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16 11 C -0.14 -2.68 9.70 -39.58 -0.38 -3.06 16 12 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 13 C 0.04 0.96 5.10 -29.04 -0.15 0.82 16 14 C -0.52 -14.03 9.09 -34.44 -0.31 -14.34 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 18 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 C -0.14 -2.67 9.70 -39.58 -0.38 -3.05 16 23 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16 24 C 0.11 1.03 3.30 -67.42 -0.22 0.81 16 25 H 0.11 1.03 6.95 -51.93 -0.36 0.67 16 26 C -0.16 -1.43 9.25 37.16 0.34 -1.09 16 27 C 0.06 0.49 6.36 37.31 0.24 0.72 16 28 O -0.37 -3.54 10.01 -35.23 -0.35 -3.89 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.94 6.94 -51.93 -0.36 0.58 16 33 H 0.08 0.69 7.68 -51.93 -0.40 0.29 16 34 H 0.13 1.77 7.62 -52.49 -0.40 1.37 16 35 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 37 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 40 H 0.13 1.77 7.62 -52.49 -0.40 1.38 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.62 7.25 -51.93 -0.38 0.24 16 44 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -32.41 378.85 -10.84 -43.24 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.90 Total: -0.43 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: -2.25 Total: -29.62 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.41 Total: -36.01 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -2.17 Total: -36.38 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 38.04 SS G_CDS: -0.62 Total: 37.42 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.41 -10.84 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884921804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.927 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds