Wall clock time and date at job start Tue Mar 31 2020 23:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.51066 * 2 1 4 4 C 1.52878 * 109.58256 * 239.98571 * 2 1 3 5 5 N 1.47150 * 108.60396 * 187.92216 * 4 2 1 6 6 S 1.65606 * 120.97969 * 230.49603 * 5 4 2 7 7 O 1.42099 * 106.40007 * 156.18171 * 6 5 4 8 8 O 1.42098 * 106.40005 * 23.26221 * 6 5 4 9 9 C 1.76199 * 107.21944 * 269.72034 * 6 5 4 10 10 C 1.38237 * 119.99795 * 89.99952 * 9 6 5 11 11 C 1.38240 * 119.99892 * 180.02562 * 10 9 6 12 12 C 1.38238 * 119.99966 * 359.95674 * 11 10 9 13 13 C 1.50698 * 119.99845 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46993 * 90.00057 * 13 12 11 15 15 H 1.07991 * 120.00449 * 359.72131 * 14 13 12 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48493 * 109.47326 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99892 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99603 * 18 16 14 22 22 C 1.38240 * 119.99731 * 0.27223 * 12 11 10 23 23 C 1.38233 * 120.00248 * 359.52316 * 22 12 11 24 24 C 1.47151 * 118.04012 * 50.22687 * 5 4 2 25 25 H 1.08997 * 109.68603 * 189.99233 * 24 5 4 26 26 C 1.53004 * 109.68091 * 69.47013 * 24 5 4 27 27 C 1.53299 * 108.38397 * 309.71415 * 24 5 4 28 28 O 1.42957 * 109.51293 * 120.10121 * 2 1 3 29 29 H 1.09004 * 109.46770 * 299.89945 * 1 2 3 30 30 H 1.08996 * 109.47097 * 59.89600 * 1 2 3 31 31 H 1.08998 * 109.46654 * 179.89744 * 1 2 3 32 32 H 1.08997 * 109.61912 * 68.10135 * 4 2 1 33 33 H 1.09000 * 109.52456 * 307.68320 * 4 2 1 34 34 H 1.07997 * 120.00113 * 359.97438 * 10 9 6 35 35 H 1.07993 * 119.99866 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47083 * 329.99473 * 13 12 11 37 37 H 1.09001 * 109.46875 * 209.99736 * 13 12 11 38 38 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 39 39 H 1.07995 * 119.99782 * 179.72830 * 22 12 11 40 40 H 1.07998 * 120.00399 * 180.25094 * 23 22 12 41 41 H 1.09000 * 109.46455 * 60.00578 * 26 24 5 42 42 H 1.09003 * 109.46854 * 180.02562 * 26 24 5 43 43 H 1.08994 * 109.47354 * 300.00891 * 26 24 5 44 44 H 1.08995 * 109.51200 * 172.22539 * 27 24 5 45 45 H 1.09004 * 109.51045 * 292.32971 * 27 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0424 -0.7205 -1.2472 5 7 3.5012 -0.8766 -1.1332 6 16 4.5065 -0.4190 -2.3671 7 8 5.7745 -0.1649 -1.7782 8 8 3.7946 0.5479 -3.1270 9 6 4.7165 -1.8196 -3.4154 10 6 3.8506 -2.0276 -4.4726 11 6 4.0150 -3.1267 -5.2948 12 6 5.0459 -4.0173 -5.0602 13 6 5.2255 -5.2151 -5.9568 14 6 6.1355 -4.8533 -7.1022 15 1 6.5395 -3.8545 -7.1762 16 6 6.4482 -5.7960 -8.0586 17 7 5.9567 -7.0125 -7.9681 18 14 7.5701 -5.3453 -9.4825 19 1 8.9804 -5.6198 -9.1077 20 1 7.2078 -6.1551 -10.6735 21 1 7.4136 -3.9028 -9.7986 22 6 5.9090 -3.8117 -4.0000 23 6 5.7471 -2.7104 -3.1805 24 6 4.0407 -1.4456 0.1120 25 1 5.1252 -1.3374 0.1254 26 6 3.6695 -2.9270 0.2048 27 6 3.4313 -0.6848 1.2951 28 8 2.0075 -0.6758 1.1657 29 1 -0.3633 0.5123 0.8909 30 1 -0.3633 0.5154 -0.8890 31 1 -0.3632 -1.0277 -0.0018 32 1 1.8043 -0.1323 -2.1334 33 1 1.5729 -1.7015 -1.3200 34 1 3.0451 -1.3319 -4.6558 35 1 3.3383 -3.2894 -6.1205 36 1 4.2562 -5.5256 -6.3468 37 1 5.6666 -6.0328 -5.3867 38 1 6.1770 -7.6758 -8.6408 39 1 6.7117 -4.5099 -3.8141 40 1 6.4239 -2.5476 -2.3547 41 1 4.0890 -3.4607 -0.6480 42 1 4.0703 -3.3449 1.1283 43 1 2.5845 -3.0307 0.2003 44 1 3.7092 -1.1776 2.2268 45 1 3.8037 0.3396 1.2999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884921804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:15 Heat of formation + Delta-G solvation = -122.518469 kcal Electronic energy + Delta-G solvation = -27965.149131 eV Core-core repulsion = 24073.386666 eV Total energy + Delta-G solvation = -3891.762465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.62669 -40.25964 -38.51487 -37.06605 -36.19582 -35.61513 -34.29028 -33.34307 -31.99524 -30.91393 -29.27290 -27.24874 -26.93985 -25.60412 -23.79219 -23.46462 -22.47618 -21.46067 -19.94649 -19.14025 -18.68081 -18.52458 -17.74530 -17.02487 -16.87634 -16.46043 -16.27919 -16.02836 -15.75044 -15.64707 -15.33951 -14.95118 -14.63969 -14.50114 -14.24876 -13.97206 -13.53356 -13.48985 -13.42912 -13.41762 -13.26754 -13.15956 -13.02389 -12.96163 -12.69845 -12.67514 -12.66556 -12.33553 -12.18416 -12.07125 -11.99923 -11.70163 -11.49703 -11.32112 -11.11787 -10.66933 -10.03551 -9.99218 -9.79602 -8.28729 -6.41606 -0.76885 -0.09536 0.36867 1.37373 1.37610 1.49148 1.79708 2.33285 2.51749 2.72728 2.80865 3.03957 3.11511 3.62554 3.72846 3.83527 3.93339 4.02840 4.07292 4.12206 4.13491 4.30862 4.34116 4.42562 4.44758 4.62510 4.63170 4.76900 4.78595 4.80739 4.87739 4.87924 4.93336 5.06154 5.07060 5.17369 5.22125 5.24072 5.30473 5.36041 5.39180 5.50004 5.65375 5.83680 5.89606 6.07897 6.23022 6.70167 7.27594 8.81387 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021912 B = 0.002751 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.534977 B =10174.070263 C =10275.895299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 H 0.063 0.937 4 C 0.080 3.920 5 N -0.991 5.991 6 S 2.715 3.285 7 O -0.977 6.977 8 O -0.977 6.977 9 C -0.700 4.700 10 C -0.019 4.019 11 C -0.154 4.154 12 C -0.002 4.002 13 C 0.049 3.951 14 C -0.535 4.535 15 H 0.053 0.947 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.964 3.036 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.268 1.268 22 C -0.153 4.153 23 C -0.018 4.018 24 C 0.102 3.898 25 H 0.113 0.887 26 C -0.158 4.158 27 C 0.057 3.943 28 O -0.382 6.382 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.155 0.845 35 H 0.130 0.870 36 H 0.013 0.987 37 H 0.013 0.987 38 H 0.268 0.732 39 H 0.130 0.870 40 H 0.154 0.846 41 H 0.050 0.950 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.130 0.870 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.318 13.077 19.956 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.015 3.985 3 H 0.081 0.919 4 C -0.044 4.044 5 N -0.831 5.831 6 S 2.808 3.192 7 O -0.968 6.968 8 O -0.968 6.968 9 C -0.788 4.788 10 C -0.038 4.038 11 C -0.173 4.173 12 C -0.003 4.003 13 C 0.012 3.988 14 C -0.573 4.573 15 H 0.072 0.928 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.788 3.212 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.172 4.172 23 C -0.038 4.038 24 C -0.003 4.003 25 H 0.131 0.869 26 C -0.217 4.217 27 C -0.021 4.021 28 O -0.301 6.301 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.172 0.828 35 H 0.148 0.852 36 H 0.031 0.969 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.148 0.852 40 H 0.172 0.828 41 H 0.069 0.931 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.148 0.852 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.066 13.647 19.866 25.751 hybrid contribution 0.821 -1.040 -1.675 2.136 sum -8.246 12.607 18.191 23.619 Atomic orbital electron populations 1.21762 0.90713 1.03659 1.03800 1.22443 0.96608 0.95055 0.84366 0.91872 1.22348 0.78278 1.03049 1.00769 1.57798 1.17295 1.79417 1.28573 1.01123 0.72434 0.73306 0.72325 1.93517 1.41633 1.84358 1.77265 1.93518 1.73946 1.57849 1.71463 1.30820 1.07859 1.23449 1.16641 1.21004 0.96338 0.95283 0.91216 1.21303 0.99513 0.95584 1.00905 1.20822 0.91753 0.95433 0.92264 1.18256 0.96618 0.90866 0.93063 1.21286 1.29570 0.97658 1.08739 0.92841 1.25865 0.97546 0.94733 1.00761 1.70054 1.45503 1.04277 1.36595 0.85458 0.78925 0.78472 0.78306 1.19638 1.20262 1.19245 1.21295 1.00399 0.99397 0.96134 1.20988 0.94045 0.91065 0.97662 1.22006 0.99987 0.94830 0.83492 0.86926 1.22074 1.02867 0.93736 1.03008 1.23057 0.80773 1.00149 0.98113 1.87941 1.21302 1.77576 1.43276 0.91027 0.89314 0.91409 0.87552 0.89464 0.82768 0.85199 0.96858 0.96830 0.92343 0.85194 0.82840 0.93122 0.89391 0.91789 0.85237 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.57 71.98 0.69 -0.84 16 2 C 0.07 1.11 3.39 30.56 0.10 1.22 16 3 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 4 C 0.08 1.34 5.59 86.21 0.48 1.82 16 5 N -0.99 -19.64 3.04 -490.12 -1.49 -21.13 16 6 S 2.71 71.27 5.75 -56.49 -0.32 70.94 16 7 O -0.98 -29.15 15.90 -128.00 -2.04 -31.19 16 8 O -0.98 -29.14 15.90 -128.00 -2.03 -31.17 16 9 C -0.70 -21.06 5.97 22.27 0.13 -20.93 16 10 C -0.02 -0.60 9.52 22.27 0.21 -0.39 16 11 C -0.15 -5.75 9.70 22.27 0.22 -5.54 16 12 C 0.00 -0.10 5.07 -19.86 -0.10 -0.20 16 13 C 0.05 2.51 5.10 29.10 0.15 2.65 16 14 C -0.53 -29.81 9.09 25.60 0.23 -29.58 16 15 H 0.05 2.96 7.74 -2.92 -0.02 2.94 16 16 C 0.01 0.56 5.46 84.66 0.46 1.02 16 17 N -0.93 -54.16 13.29 21.45 0.28 -53.87 16 18 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 22 C -0.15 -5.71 9.70 22.27 0.22 -5.50 16 23 C -0.02 -0.58 9.52 22.27 0.21 -0.37 16 24 C 0.10 1.70 3.30 44.97 0.15 1.84 16 25 H 0.11 1.83 6.95 -2.39 -0.02 1.81 16 26 C -0.16 -2.48 9.25 71.98 0.67 -1.81 16 27 C 0.06 0.79 6.36 72.08 0.46 1.25 16 28 O -0.38 -6.30 10.01 -148.98 -1.49 -7.79 16 29 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 1.71 6.94 -2.39 -0.02 1.69 16 33 H 0.09 1.33 7.68 -2.39 -0.02 1.31 16 34 H 0.15 3.96 7.62 -2.91 -0.02 3.94 16 35 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 36 H 0.01 0.71 8.09 -2.39 -0.02 0.69 16 37 H 0.01 0.73 8.08 -2.39 -0.02 0.71 16 38 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 39 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 40 H 0.15 3.96 7.62 -2.91 -0.02 3.94 16 41 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 1.05 7.25 -2.39 -0.02 1.03 16 44 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -69.68 378.85 0.19 -69.50 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.97 Total: 14.45 kcal Atomic # 6 Polarization: -59.62 SS G_CDS: 4.28 Total: -55.34 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -1.20 Total: -75.00 kcal Atomic # 8 Polarization: -64.59 SS G_CDS: -5.56 Total: -70.15 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 71.27 SS G_CDS: -0.32 Total: 70.94 kcal Total: -69.68 0.19 -69.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884921804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.020 kcal (2) G-P(sol) polarization free energy of solvation -69.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds