Wall clock time and date at job start Tue Mar 31 2020 23:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.70799 * 2 1 4 4 C 1.52877 * 109.61548 * 239.69686 * 2 1 3 5 5 O 1.42963 * 109.29700 * 188.11465 * 4 2 1 6 6 C 1.42960 * 114.16804 * 62.44833 * 5 4 2 7 7 H 1.09008 * 109.51195 * 57.34384 * 6 5 4 8 8 C 1.53001 * 109.55667 * 177.46826 * 6 5 4 9 9 C 1.53298 * 109.22260 * 297.42167 * 6 5 4 10 10 N 1.47149 * 108.38494 * 52.30030 * 9 6 5 11 11 S 1.65604 * 120.98231 * 129.44429 * 10 9 6 12 12 O 1.42100 * 106.39885 * 343.92672 * 11 10 9 13 13 O 1.42101 * 106.40286 * 211.00599 * 11 10 9 14 14 C 1.76203 * 107.21865 * 97.46514 * 11 10 9 15 15 C 1.38229 * 119.99923 * 90.00046 * 14 11 10 16 16 C 1.38233 * 120.00284 * 179.97438 * 15 14 11 17 17 C 1.38234 * 119.99507 * 359.95858 * 16 15 14 18 18 C 1.50707 * 119.99960 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47178 * 89.99659 * 18 17 16 20 20 H 1.08000 * 119.99932 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00209 * 180.02562 * 19 18 17 22 22 N 1.31520 * 120.00014 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00196 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47213 * 60.00027 * 23 21 19 25 25 H 1.48500 * 109.46967 * 299.99796 * 23 21 19 26 26 H 1.48502 * 109.47090 * 180.02562 * 23 21 19 27 27 C 1.38237 * 120.00526 * 0.27491 * 17 16 15 28 28 C 1.38230 * 119.99928 * 269.97727 * 14 11 10 29 29 H 1.09004 * 109.46752 * 293.33196 * 1 2 3 30 30 H 1.08989 * 109.47492 * 53.33641 * 1 2 3 31 31 H 1.09005 * 109.46944 * 173.34183 * 1 2 3 32 32 H 1.08999 * 109.58745 * 68.09825 * 4 2 1 33 33 H 1.09005 * 109.40988 * 308.01934 * 4 2 1 34 34 H 1.08996 * 109.46843 * 179.76810 * 8 6 5 35 35 H 1.08999 * 109.47163 * 299.77421 * 8 6 5 36 36 H 1.08998 * 109.46682 * 59.77388 * 8 6 5 37 37 H 1.09002 * 109.67680 * 292.57478 * 9 6 5 38 38 H 1.09003 * 109.67860 * 172.02705 * 9 6 5 39 39 H 1.08003 * 120.00063 * 359.97438 * 15 14 11 40 40 H 1.07995 * 120.00318 * 179.97438 * 16 15 14 41 41 H 1.09004 * 109.46722 * 329.99678 * 18 17 16 42 42 H 1.08998 * 109.47022 * 210.00022 * 18 17 16 43 43 H 0.96995 * 119.99504 * 359.97438 * 22 21 19 44 44 H 1.07990 * 120.00243 * 179.72642 * 27 17 16 45 45 H 1.08002 * 120.00114 * 0.02562 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0433 -0.7266 -1.2433 5 8 3.4602 -0.8893 -1.1442 6 6 3.8812 -1.6922 -0.0389 7 1 3.4130 -2.6745 -0.1031 8 6 5.4029 -1.8486 -0.0698 9 6 3.4630 -1.0101 1.2687 10 7 2.0257 -0.7040 1.1934 11 16 0.9952 -1.1448 2.4125 12 8 1.6871 -2.1093 3.1936 13 8 -0.2634 -1.3964 1.8027 14 6 0.7747 0.2661 3.4448 15 6 -0.2459 1.1609 3.1835 16 6 -0.4193 2.2675 3.9937 17 6 0.4276 2.4786 5.0656 18 6 0.2384 3.6847 5.9493 19 6 -0.6959 3.3376 7.0796 20 1 -1.1109 2.3431 7.1512 21 6 -1.0211 4.2897 8.0223 22 7 -0.5162 5.5010 7.9348 23 14 -2.1786 3.8593 9.4238 24 1 -1.5993 2.7485 10.2209 25 1 -3.4912 3.4395 8.8704 26 1 -2.3662 5.0482 10.2937 27 6 1.4513 1.5863 5.3241 28 6 1.6221 0.4777 4.5162 29 1 -0.3633 0.4070 0.9437 30 1 -0.3634 0.6136 -0.8242 31 1 -0.3633 -1.0208 -0.1192 32 1 1.8051 -0.1426 -2.1323 33 1 1.5684 -1.7053 -1.3128 34 1 5.7228 -2.4575 0.7758 35 1 5.6995 -2.3337 -0.9997 36 1 5.8704 -0.8659 -0.0074 37 1 4.0286 -0.0874 1.3985 38 1 3.6525 -1.6787 2.1085 39 1 -0.9080 0.9955 2.3464 40 1 -1.2164 2.9668 3.7893 41 1 -0.1863 4.5006 5.3643 42 1 1.2019 3.9921 6.3557 43 1 0.0851 5.7244 7.2073 44 1 2.1156 1.7537 6.1589 45 1 2.4196 -0.2214 4.7203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884921805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:19 Heat of formation + Delta-G solvation = -88.942448 kcal Electronic energy + Delta-G solvation = -28069.187176 eV Core-core repulsion = 24178.880677 eV Total energy + Delta-G solvation = -3890.306500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.88779 -38.95102 -37.60959 -35.97239 -35.47139 -34.04579 -33.68525 -31.57499 -30.76365 -30.32519 -27.17891 -26.57638 -25.78909 -23.57352 -22.70841 -22.48548 -21.34468 -21.14673 -19.04305 -17.88414 -17.32540 -17.02579 -16.92148 -16.49737 -15.60522 -15.29914 -15.09084 -15.01574 -14.78090 -14.47051 -14.01564 -13.77088 -13.57826 -13.44187 -13.31466 -12.94955 -12.73137 -12.38904 -12.36074 -12.28993 -12.17818 -11.94853 -11.85780 -11.82496 -11.66384 -11.43282 -11.18328 -10.92927 -10.83421 -10.65704 -10.57880 -10.31173 -10.21995 -9.99927 -9.30412 -9.07332 -8.70429 -8.51874 -8.33341 -6.53977 -4.26910 0.33029 1.21501 1.67322 2.79292 3.36947 3.37525 3.37696 3.56818 3.66698 3.97066 4.15635 4.34615 4.38438 4.43827 4.61802 4.72054 4.76450 4.90772 4.99448 5.01835 5.09605 5.22261 5.23744 5.26881 5.34113 5.38040 5.46402 5.53957 5.59345 5.62431 5.73933 5.77742 5.79358 5.88111 6.11619 6.17133 6.23884 6.28125 6.41361 6.68976 6.71335 6.82855 6.94075 7.26566 7.33732 7.90120 8.25834 8.66570 9.44309 10.85488 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022133 B = 0.002758 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.752057 B =10149.764327 C =10280.465051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.118 3.882 3 H 0.084 0.916 4 C 0.057 3.943 5 O -0.376 6.376 6 C 0.076 3.924 7 H 0.064 0.936 8 C -0.145 4.145 9 C 0.086 3.914 10 N -1.000 6.000 11 S 2.693 3.307 12 O -0.964 6.964 13 O -0.957 6.957 14 C -0.702 4.702 15 C -0.027 4.027 16 C -0.144 4.144 17 C 0.031 3.969 18 C 0.027 3.973 19 C -0.598 4.598 20 H 0.053 0.947 21 C 0.020 3.980 22 N -0.906 5.906 23 Si 1.071 2.929 24 H -0.286 1.286 25 H -0.286 1.286 26 H -0.280 1.280 27 C -0.144 4.144 28 C -0.022 4.022 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.026 0.974 42 H 0.025 0.975 43 H 0.269 0.731 44 H 0.128 0.872 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.459 -12.765 -18.757 24.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.012 3.988 3 H 0.102 0.898 4 C -0.021 4.021 5 O -0.295 6.295 6 C 0.017 3.983 7 H 0.082 0.918 8 C -0.203 4.203 9 C -0.039 4.039 10 N -0.838 5.838 11 S 2.789 3.211 12 O -0.955 6.955 13 O -0.947 6.947 14 C -0.791 4.791 15 C -0.046 4.046 16 C -0.163 4.163 17 C 0.031 3.969 18 C -0.010 4.010 19 C -0.636 4.636 20 H 0.071 0.929 21 C -0.184 4.184 22 N -0.541 5.541 23 Si 0.898 3.102 24 H -0.212 1.212 25 H -0.212 1.212 26 H -0.206 1.206 27 C -0.163 4.163 28 C -0.041 4.041 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.146 0.854 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.477 -12.892 -17.415 22.921 hybrid contribution 0.602 0.110 -0.821 1.024 sum 8.079 -12.782 -18.236 23.690 Atomic orbital electron populations 1.22790 0.91913 1.05703 1.03923 1.21662 0.95463 0.96716 0.84919 0.89768 1.22933 0.81499 1.00321 0.97381 1.87945 1.21888 1.71809 1.47825 1.22434 0.96332 0.93661 0.85867 0.91794 1.21752 0.92359 1.03134 1.03024 1.22248 0.80172 1.01783 0.99706 1.57953 1.18975 1.74173 1.32679 1.01822 0.73035 0.73966 0.72253 1.93521 1.74601 1.57715 1.69659 1.93649 1.41403 1.84600 1.75069 1.30390 1.09070 1.23401 1.16257 1.20877 0.93826 0.92159 0.97763 1.21217 1.00547 0.98405 0.96121 1.20871 0.89454 0.95557 0.91045 1.18653 0.98025 0.90291 0.94012 1.21826 1.30612 1.00319 1.10836 0.92908 1.25925 0.98780 0.93159 1.00558 1.70806 1.29984 1.19933 1.33414 0.83504 0.75541 0.75740 0.75382 1.21225 1.21233 1.20553 1.21221 0.99838 0.94993 1.00271 1.20750 0.95717 0.95819 0.91834 0.90600 0.90990 0.88620 0.87563 0.92414 0.90538 0.91396 0.91398 0.90285 0.87625 0.84867 0.85357 0.95635 0.95646 0.92023 0.85363 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.83 7.55 37.16 0.28 -1.55 16 2 C 0.12 1.14 3.69 -67.64 -0.25 0.89 16 3 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.06 0.48 6.27 37.09 0.23 0.72 16 5 O -0.38 -3.71 10.39 -35.23 -0.37 -4.07 16 6 C 0.08 0.67 3.40 -26.58 -0.09 0.58 16 7 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 8 C -0.14 -0.96 9.57 37.16 0.36 -0.60 16 9 C 0.09 0.83 6.02 -3.53 -0.02 0.81 16 10 N -1.00 -11.14 3.35 -106.26 -0.36 -11.50 16 11 S 2.69 37.76 5.31 -107.50 -0.57 37.19 16 12 O -0.96 -15.41 15.75 -57.17 -0.90 -16.31 16 13 O -0.96 -14.40 12.54 -57.17 -0.72 -15.12 16 14 C -0.70 -11.16 5.97 -39.59 -0.24 -11.40 16 15 C -0.03 -0.44 8.94 -39.59 -0.35 -0.79 16 16 C -0.14 -2.69 9.70 -39.58 -0.38 -3.07 16 17 C 0.03 0.65 5.07 -104.62 -0.53 0.12 16 18 C 0.03 0.66 4.42 -29.03 -0.13 0.53 16 19 C -0.60 -16.45 9.09 -34.44 -0.31 -16.77 16 20 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 21 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 22 N -0.91 -26.68 13.65 55.43 0.76 -25.92 16 23 Si 1.07 24.71 29.90 -169.99 -5.08 19.63 16 24 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 C -0.14 -2.72 9.70 -39.58 -0.38 -3.10 16 28 C -0.02 -0.36 9.52 -39.58 -0.38 -0.74 16 29 H 0.08 0.85 3.21 -51.93 -0.17 0.69 16 30 H 0.07 0.53 8.14 -51.94 -0.42 0.11 16 31 H 0.10 1.03 6.58 -51.93 -0.34 0.69 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.11 0.99 6.81 -51.93 -0.35 0.64 16 39 H 0.13 1.82 5.48 -52.48 -0.29 1.54 16 40 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 41 H 0.03 0.64 7.95 -51.93 -0.41 0.22 16 42 H 0.03 0.64 7.95 -51.93 -0.41 0.22 16 43 H 0.27 7.82 7.22 -40.82 -0.29 7.52 16 44 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 45 H 0.13 1.83 7.62 -52.49 -0.40 1.43 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -32.97 366.48 -10.53 -43.50 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.52 Total: 0.98 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: -2.30 Total: -33.89 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.40 Total: -37.42 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -1.98 Total: -35.50 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.08 Total: 19.63 kcal Atomic # 16 Polarization: 37.76 SS G_CDS: -0.57 Total: 37.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.97 -10.53 -43.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884921805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.445 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds