Wall clock time and date at job start Tue Mar 31 2020 23:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.70799 * 2 1 4 4 C 1.52877 * 109.61548 * 239.69686 * 2 1 3 5 5 O 1.42963 * 109.29700 * 188.11465 * 4 2 1 6 6 C 1.42960 * 114.16804 * 62.44833 * 5 4 2 7 7 H 1.09008 * 109.51195 * 57.34384 * 6 5 4 8 8 C 1.53001 * 109.55667 * 177.46826 * 6 5 4 9 9 C 1.53298 * 109.22260 * 297.42167 * 6 5 4 10 10 N 1.47149 * 108.38494 * 52.30030 * 9 6 5 11 11 S 1.65604 * 120.98231 * 129.44429 * 10 9 6 12 12 O 1.42100 * 106.39885 * 343.92672 * 11 10 9 13 13 O 1.42101 * 106.40286 * 211.00599 * 11 10 9 14 14 C 1.76203 * 107.21865 * 97.46514 * 11 10 9 15 15 C 1.38229 * 119.99923 * 90.00046 * 14 11 10 16 16 C 1.38233 * 120.00284 * 179.97438 * 15 14 11 17 17 C 1.38234 * 119.99507 * 359.95858 * 16 15 14 18 18 C 1.50707 * 119.99960 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47178 * 89.99659 * 18 17 16 20 20 H 1.08000 * 119.99932 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00209 * 180.02562 * 19 18 17 22 22 N 1.31520 * 120.00014 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00196 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47213 * 60.00027 * 23 21 19 25 25 H 1.48500 * 109.46967 * 299.99796 * 23 21 19 26 26 H 1.48502 * 109.47090 * 180.02562 * 23 21 19 27 27 C 1.38237 * 120.00526 * 0.27491 * 17 16 15 28 28 C 1.38230 * 119.99928 * 269.97727 * 14 11 10 29 29 H 1.09004 * 109.46752 * 293.33196 * 1 2 3 30 30 H 1.08989 * 109.47492 * 53.33641 * 1 2 3 31 31 H 1.09005 * 109.46944 * 173.34183 * 1 2 3 32 32 H 1.08999 * 109.58745 * 68.09825 * 4 2 1 33 33 H 1.09005 * 109.40988 * 308.01934 * 4 2 1 34 34 H 1.08996 * 109.46843 * 179.76810 * 8 6 5 35 35 H 1.08999 * 109.47163 * 299.77421 * 8 6 5 36 36 H 1.08998 * 109.46682 * 59.77388 * 8 6 5 37 37 H 1.09002 * 109.67680 * 292.57478 * 9 6 5 38 38 H 1.09003 * 109.67860 * 172.02705 * 9 6 5 39 39 H 1.08003 * 120.00063 * 359.97438 * 15 14 11 40 40 H 1.07995 * 120.00318 * 179.97438 * 16 15 14 41 41 H 1.09004 * 109.46722 * 329.99678 * 18 17 16 42 42 H 1.08998 * 109.47022 * 210.00022 * 18 17 16 43 43 H 0.96995 * 119.99504 * 359.97438 * 22 21 19 44 44 H 1.07990 * 120.00243 * 179.72642 * 27 17 16 45 45 H 1.08002 * 120.00114 * 0.02562 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0433 -0.7266 -1.2433 5 8 3.4602 -0.8893 -1.1442 6 6 3.8812 -1.6922 -0.0389 7 1 3.4130 -2.6745 -0.1031 8 6 5.4029 -1.8486 -0.0698 9 6 3.4630 -1.0101 1.2687 10 7 2.0257 -0.7040 1.1934 11 16 0.9952 -1.1448 2.4125 12 8 1.6871 -2.1093 3.1936 13 8 -0.2634 -1.3964 1.8027 14 6 0.7747 0.2661 3.4448 15 6 -0.2459 1.1609 3.1835 16 6 -0.4193 2.2675 3.9937 17 6 0.4276 2.4786 5.0656 18 6 0.2384 3.6847 5.9493 19 6 -0.6959 3.3376 7.0796 20 1 -1.1109 2.3431 7.1512 21 6 -1.0211 4.2897 8.0223 22 7 -0.5162 5.5010 7.9348 23 14 -2.1786 3.8593 9.4238 24 1 -1.5993 2.7485 10.2209 25 1 -3.4912 3.4395 8.8704 26 1 -2.3662 5.0482 10.2937 27 6 1.4513 1.5863 5.3241 28 6 1.6221 0.4777 4.5162 29 1 -0.3633 0.4070 0.9437 30 1 -0.3634 0.6136 -0.8242 31 1 -0.3633 -1.0208 -0.1192 32 1 1.8051 -0.1426 -2.1323 33 1 1.5684 -1.7053 -1.3128 34 1 5.7228 -2.4575 0.7758 35 1 5.6995 -2.3337 -0.9997 36 1 5.8704 -0.8659 -0.0074 37 1 4.0286 -0.0874 1.3985 38 1 3.6525 -1.6787 2.1085 39 1 -0.9080 0.9955 2.3464 40 1 -1.2164 2.9668 3.7893 41 1 -0.1863 4.5006 5.3643 42 1 1.2019 3.9921 6.3557 43 1 0.0851 5.7244 7.2073 44 1 2.1156 1.7537 6.1589 45 1 2.4196 -0.2214 4.7203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884921805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:19 Heat of formation + Delta-G solvation = -109.938777 kcal Electronic energy + Delta-G solvation = -28070.097645 eV Core-core repulsion = 24178.880677 eV Total energy + Delta-G solvation = -3891.216969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.61278 -40.38607 -38.74561 -37.12214 -36.30917 -35.99459 -34.37631 -33.30798 -32.12761 -31.05799 -28.96511 -27.33475 -26.47879 -25.53351 -23.88113 -23.43607 -22.75799 -22.04543 -20.17061 -19.21930 -18.87135 -18.22602 -17.84821 -17.29784 -16.67082 -16.60898 -16.18004 -15.88651 -15.76904 -15.66298 -15.61238 -15.29323 -15.04888 -14.69551 -14.34498 -13.92974 -13.80440 -13.60622 -13.58545 -13.43211 -13.29065 -13.20078 -12.92458 -12.78082 -12.65693 -12.57719 -12.49357 -12.18860 -12.10017 -12.00373 -11.92644 -11.61246 -11.34279 -11.17729 -11.08836 -10.65140 -10.09202 -10.07192 -9.83011 -8.76647 -6.50938 -0.79366 -0.18418 0.26497 1.49556 1.56316 1.76145 1.76961 2.41164 2.52305 2.66112 2.75630 3.05847 3.12112 3.51847 3.63016 3.68881 3.82369 3.94784 3.97974 4.06121 4.07133 4.24253 4.31958 4.33286 4.34580 4.58800 4.62118 4.65254 4.67966 4.73580 4.78061 4.86321 4.92736 4.93430 4.96579 5.03061 5.04321 5.08985 5.18341 5.33225 5.46080 5.48850 5.67562 5.74768 5.85593 6.04979 6.17971 6.44977 7.28527 8.62669 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022133 B = 0.002758 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.752057 B =10149.764327 C =10280.465051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.114 3.886 3 H 0.092 0.908 4 C 0.056 3.944 5 O -0.387 6.387 6 C 0.074 3.926 7 H 0.064 0.936 8 C -0.143 4.143 9 C 0.078 3.922 10 N -0.994 5.994 11 S 2.713 3.287 12 O -0.982 6.982 13 O -0.965 6.965 14 C -0.700 4.700 15 C -0.021 4.021 16 C -0.154 4.154 17 C -0.001 4.001 18 C 0.033 3.967 19 C -0.610 4.610 20 H 0.045 0.955 21 C -0.029 4.029 22 N -0.930 5.930 23 Si 1.115 2.885 24 H -0.270 1.270 25 H -0.270 1.270 26 H -0.279 1.279 27 C -0.155 4.155 28 C -0.020 4.020 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.130 0.870 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.161 0.839 40 H 0.130 0.870 41 H 0.010 0.990 42 H 0.009 0.991 43 H 0.259 0.741 44 H 0.129 0.871 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.646 -14.540 -20.306 26.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.009 3.991 3 H 0.109 0.891 4 C -0.023 4.023 5 O -0.306 6.306 6 C 0.014 3.986 7 H 0.082 0.918 8 C -0.200 4.200 9 C -0.046 4.046 10 N -0.834 5.834 11 S 2.806 3.194 12 O -0.972 6.972 13 O -0.955 6.955 14 C -0.787 4.787 15 C -0.040 4.040 16 C -0.173 4.173 17 C -0.001 4.001 18 C -0.004 4.004 19 C -0.647 4.647 20 H 0.064 0.936 21 C -0.227 4.227 22 N -0.567 5.567 23 Si 0.936 3.064 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.204 1.204 27 C -0.174 4.174 28 C -0.039 4.039 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.148 0.852 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.126 0.874 39 H 0.179 0.821 40 H 0.148 0.852 41 H 0.029 0.971 42 H 0.028 0.972 43 H 0.068 0.932 44 H 0.147 0.853 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.668 -14.657 -18.961 25.162 hybrid contribution 0.610 0.582 -0.509 0.985 sum 8.278 -14.075 -19.470 25.411 Atomic orbital electron populations 1.22785 0.92010 1.05592 1.04177 1.21869 0.95434 0.97145 0.84655 0.89050 1.23071 0.80920 1.00750 0.97519 1.87943 1.22581 1.71973 1.48122 1.22553 0.97621 0.93358 0.85025 0.91753 1.21773 0.90814 1.03519 1.03908 1.22490 0.79117 1.02514 1.00529 1.57788 1.19433 1.74177 1.31994 1.01326 0.72941 0.73038 0.72047 1.93496 1.74980 1.58097 1.70656 1.93652 1.42449 1.84518 1.74922 1.30922 1.08057 1.23592 1.16107 1.21162 0.94040 0.90992 0.97759 1.21298 1.00382 0.99554 0.96065 1.20628 0.91928 0.95328 0.92266 1.18428 0.96389 0.91714 0.93861 1.22150 1.30849 0.99903 1.11843 0.93640 1.27372 0.99709 0.92677 1.02977 1.70921 1.31115 1.21006 1.33639 0.82950 0.74484 0.76008 0.72946 1.19551 1.19513 1.20428 1.21284 0.99529 0.95589 1.00966 1.21012 0.96342 0.95244 0.91282 0.92096 0.88309 0.89509 0.85216 0.92193 0.89180 0.90941 0.91361 0.89388 0.87388 0.82131 0.85193 0.97140 0.97238 0.93178 0.85322 0.82738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.22 7.55 71.98 0.54 -2.67 16 2 C 0.11 1.90 3.69 44.83 0.17 2.07 16 3 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 4 C 0.06 0.78 6.27 71.94 0.45 1.23 16 5 O -0.39 -6.63 10.39 -148.98 -1.55 -8.18 16 6 C 0.07 1.12 3.40 30.69 0.10 1.22 16 7 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 8 C -0.14 -1.54 9.57 71.98 0.69 -0.85 16 9 C 0.08 1.33 6.02 86.36 0.52 1.85 16 10 N -0.99 -19.86 3.35 -490.09 -1.64 -21.50 16 11 S 2.71 70.60 5.31 -56.49 -0.30 70.30 16 12 O -0.98 -29.42 15.75 -128.00 -2.02 -31.44 16 13 O -0.97 -27.09 12.54 -128.00 -1.61 -28.69 16 14 C -0.70 -21.18 5.97 22.27 0.13 -21.04 16 15 C -0.02 -0.65 8.94 22.27 0.20 -0.45 16 16 C -0.15 -5.78 9.70 22.27 0.22 -5.57 16 17 C 0.00 -0.05 5.07 -19.86 -0.10 -0.15 16 18 C 0.03 1.68 4.42 29.10 0.13 1.81 16 19 C -0.61 -34.45 9.09 25.60 0.23 -34.22 16 20 H 0.05 2.58 7.74 -2.91 -0.02 2.55 16 21 C -0.03 -1.64 5.46 84.65 0.46 -1.18 16 22 N -0.93 -56.23 13.65 21.45 0.29 -55.93 16 23 Si 1.12 49.75 29.90 68.60 2.05 51.80 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 27 C -0.15 -5.88 9.70 22.27 0.22 -5.66 16 28 C -0.02 -0.63 9.52 22.27 0.21 -0.42 16 29 H 0.06 1.22 3.21 -2.39 -0.01 1.22 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.67 6.58 -2.38 -0.02 1.65 16 32 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 0.82 8.10 -2.38 -0.02 0.80 16 34 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.11 1.79 6.81 -2.39 -0.02 1.77 16 39 H 0.16 4.08 5.48 -2.91 -0.02 4.06 16 40 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 41 H 0.01 0.55 7.95 -2.38 -0.02 0.53 16 42 H 0.01 0.50 7.95 -2.39 -0.02 0.48 16 43 H 0.26 15.68 7.22 -92.71 -0.67 15.01 16 44 H 0.13 4.72 8.06 -2.92 -0.02 4.69 16 45 H 0.16 4.08 7.62 -2.91 -0.02 4.06 16 Total: -1.00 -71.32 366.48 0.50 -70.83 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 1.09 Total: 16.85 kcal Atomic # 6 Polarization: -68.20 SS G_CDS: 4.17 Total: -64.03 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -1.35 Total: -77.43 kcal Atomic # 8 Polarization: -63.14 SS G_CDS: -5.17 Total: -68.31 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.05 Total: 51.80 kcal Atomic # 16 Polarization: 70.60 SS G_CDS: -0.30 Total: 70.30 kcal Total: -71.32 0.50 -70.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884921805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.113 kcal (2) G-P(sol) polarization free energy of solvation -71.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds