Wall clock time and date at job start Tue Mar 31 2020 23:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46744 * 2 1 4 4 C 1.54810 * 109.47179 * 240.00744 * 2 1 3 5 5 N 1.45121 * 109.53120 * 172.10577 * 4 2 1 6 6 S 1.65608 * 118.75345 * 269.29106 * 5 4 2 7 7 O 1.42104 * 106.39724 * 203.54011 * 6 5 4 8 8 O 1.42097 * 106.40199 * 336.45923 * 6 5 4 9 9 C 1.76195 * 107.21632 * 90.00181 * 6 5 4 10 10 C 1.38239 * 120.00286 * 269.72172 * 9 6 5 11 11 C 1.38237 * 120.00342 * 179.76914 * 10 9 6 12 12 C 1.38231 * 119.99775 * 0.50897 * 11 10 9 13 13 C 1.50693 * 120.00106 * 179.72571 * 12 11 10 14 14 C 1.50700 * 109.47418 * 270.02410 * 13 12 11 15 15 H 1.08000 * 119.99745 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00492 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99912 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99766 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46734 * 90.00357 * 18 16 14 20 20 H 1.48497 * 109.46888 * 210.00158 * 18 16 14 21 21 H 1.48493 * 109.47204 * 330.00471 * 18 16 14 22 22 C 1.38242 * 120.00232 * 359.74450 * 12 11 10 23 23 C 1.38237 * 119.99732 * 0.02562 * 22 12 11 24 24 C 1.47501 * 122.48843 * 89.56574 * 5 4 2 25 25 C 1.53948 * 110.82184 * 317.97979 * 24 5 4 26 26 C 1.51534 * 109.72634 * 320.29982 * 25 24 5 27 27 O 1.38013 * 109.47430 * 119.99214 * 2 1 3 28 28 H 1.09000 * 109.46805 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47063 * 299.99280 * 1 2 3 30 30 H 1.09005 * 109.47038 * 59.99616 * 1 2 3 31 31 H 1.08995 * 109.45760 * 52.08540 * 4 2 1 32 32 H 1.09001 * 109.45785 * 292.12330 * 4 2 1 33 33 H 1.08001 * 119.99420 * 0.02562 * 10 9 6 34 34 H 1.08000 * 119.99492 * 180.23643 * 11 10 9 35 35 H 1.09005 * 109.46954 * 30.02038 * 13 12 11 36 36 H 1.09000 * 109.47455 * 150.01746 * 13 12 11 37 37 H 0.97007 * 119.99559 * 179.97438 * 17 16 14 38 38 H 1.07999 * 119.99959 * 179.97438 * 22 12 11 39 39 H 1.07994 * 119.99872 * 179.97438 * 23 22 12 40 40 H 1.09006 * 109.16617 * 78.49814 * 24 5 4 41 41 H 1.09000 * 109.16898 * 197.69134 * 24 5 4 42 42 H 1.09006 * 109.46019 * 200.17619 * 25 24 5 43 43 H 1.08998 * 109.30236 * 80.32976 * 25 24 5 44 44 H 1.09004 * 109.58879 * 331.51396 * 26 25 24 45 45 H 1.08996 * 109.70990 * 211.14827 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0460 -0.7296 -1.2641 5 7 3.4850 -0.5698 -1.3631 6 16 4.0870 0.7204 -2.2089 7 8 5.3990 0.3565 -2.6157 8 8 3.0706 1.1112 -3.1218 9 6 4.2706 2.0514 -1.0690 10 6 3.2294 2.9384 -0.8685 11 6 3.3718 3.9798 0.0293 12 6 4.5591 4.1404 0.7188 13 6 4.7165 5.2793 1.6930 14 6 5.2636 6.4846 0.9726 15 1 5.4765 6.4311 -0.0848 16 6 5.4935 7.6554 1.6637 17 7 5.9714 8.7070 1.0350 18 14 5.1260 7.7477 3.4929 19 1 6.3328 7.3489 4.2609 20 1 4.7476 9.1380 3.8521 21 1 4.0056 6.8296 3.8196 22 6 5.6022 3.2566 0.5145 23 6 5.4581 2.2124 -0.3799 24 6 4.4317 -1.5164 -0.7438 25 6 3.9603 -1.9185 0.6655 26 6 3.3881 -0.7096 1.3778 27 8 1.9901 -0.6504 1.1269 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.5716 -0.3037 -2.1482 32 1 1.8021 -1.7898 -1.1964 33 1 2.3033 2.8152 -1.4103 34 1 2.5569 4.6704 0.1888 35 1 3.7464 5.5241 2.1257 36 1 5.4046 4.9866 2.4861 37 1 6.1328 9.5308 1.5212 38 1 6.5299 3.3824 1.0529 39 1 6.2731 1.5221 -0.5398 40 1 4.5069 -2.4070 -1.3677 41 1 5.4127 -1.0465 -0.6728 42 1 4.8051 -2.3083 1.2336 43 1 3.1929 -2.6881 0.5828 44 1 3.8653 0.1956 1.0023 45 1 3.5635 -0.7975 2.4499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884997187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:43 Heat of formation + Delta-G solvation = -94.285629 kcal Electronic energy + Delta-G solvation = -28723.815870 eV Core-core repulsion = 24833.277673 eV Total energy + Delta-G solvation = -3890.538197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.94635 -38.93624 -37.35501 -35.99901 -35.79164 -33.88690 -33.72780 -31.78708 -30.71505 -30.27039 -28.02067 -27.31471 -25.27309 -23.55609 -22.50672 -21.76725 -21.43884 -20.70022 -19.08469 -18.14813 -17.50595 -16.97772 -16.93937 -16.70448 -15.90989 -15.46775 -15.15926 -14.71216 -14.59206 -14.31321 -14.06315 -13.91803 -13.29699 -13.24488 -13.22380 -12.94423 -12.80462 -12.65496 -12.51118 -12.21503 -12.09430 -11.94679 -11.91437 -11.88696 -11.81410 -11.53945 -11.14167 -10.99431 -10.95848 -10.68216 -10.56400 -10.28610 -10.14688 -9.84027 -9.57760 -9.13518 -8.73196 -8.68434 -8.48386 -6.21095 -4.22921 0.34944 1.19212 1.66638 2.81912 3.18176 3.26968 3.27535 3.45883 3.67210 3.97086 4.21615 4.28257 4.36065 4.51297 4.66651 4.78920 4.85840 4.96127 5.02211 5.06410 5.12108 5.14265 5.26263 5.32468 5.43602 5.46053 5.52011 5.52308 5.65486 5.66630 5.72629 5.76817 5.83394 5.88942 5.96644 6.09589 6.17989 6.32447 6.42385 6.64995 6.65378 6.77774 7.23363 7.25530 7.43961 7.50451 8.31614 8.82316 9.37063 10.91391 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.003549 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.009175 B = 7888.158123 C = 8434.517467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 H 0.057 0.943 4 C 0.078 3.922 5 N -0.997 5.997 6 S 2.686 3.314 7 O -0.960 6.960 8 O -0.960 6.960 9 C -0.703 4.703 10 C -0.023 4.023 11 C -0.140 4.140 12 C 0.032 3.968 13 C 0.006 3.994 14 C -0.521 4.521 15 H 0.075 0.925 16 C 0.073 3.927 17 N -0.894 5.894 18 Si 0.879 3.121 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.265 1.265 22 C -0.141 4.141 23 C -0.023 4.023 24 C 0.119 3.881 25 C -0.162 4.162 26 C 0.072 3.928 27 O -0.382 6.382 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.034 0.966 36 H 0.029 0.971 37 H 0.267 0.733 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.863 -22.836 -0.299 24.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.014 3.986 3 H 0.074 0.926 4 C -0.049 4.049 5 N -0.834 5.834 6 S 2.780 3.220 7 O -0.951 6.951 8 O -0.950 6.950 9 C -0.793 4.793 10 C -0.042 4.042 11 C -0.159 4.159 12 C 0.032 3.968 13 C -0.031 4.031 14 C -0.559 4.559 15 H 0.093 0.907 16 C -0.129 4.129 17 N -0.531 5.531 18 Si 0.705 3.295 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.189 1.189 22 C -0.160 4.160 23 C -0.042 4.042 24 C -0.006 4.006 25 C -0.202 4.202 26 C -0.005 4.005 27 O -0.301 6.301 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.727 -22.761 -1.070 24.060 hybrid contribution 0.217 0.818 1.366 1.607 sum -7.510 -21.943 0.296 23.195 Atomic orbital electron populations 1.21745 0.92212 1.03047 1.03101 1.22201 0.95425 0.95471 0.85527 0.92560 1.22407 0.79095 1.03465 0.99896 1.57429 1.13088 1.41277 1.71564 1.02046 0.73247 0.72859 0.73875 1.93558 1.38407 1.82848 1.80257 1.93542 1.59134 1.82587 1.59758 1.30439 1.03100 1.21786 1.23932 1.20743 0.96415 0.92656 0.94395 1.21216 0.98767 0.98211 0.97723 1.20706 0.91445 0.92179 0.92464 1.18983 0.98165 0.92142 0.93786 1.20813 1.43897 0.93644 0.97514 0.90672 1.24979 0.94239 0.95359 0.98370 1.69890 1.44163 1.02505 1.36585 0.86797 0.79370 0.77682 0.85619 1.20020 1.21029 1.18935 1.21220 0.99552 0.95275 0.99986 1.20750 0.94319 0.96902 0.92277 1.21769 0.91429 0.93410 0.93997 1.22524 1.02248 0.99857 0.95536 1.22203 0.80958 0.97380 0.99915 1.86233 1.23459 1.76826 1.43569 0.91663 0.91359 0.90584 0.88104 0.89063 0.85195 0.85197 0.94794 0.95246 0.92341 0.85204 0.85237 0.90880 0.89380 0.89568 0.90133 0.92386 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.55 37.16 0.36 -0.80 16 2 C 0.07 0.74 3.25 -25.78 -0.08 0.66 16 3 H 0.06 0.64 6.13 -51.93 -0.32 0.32 16 4 C 0.08 0.73 5.09 -3.83 -0.02 0.71 16 5 N -1.00 -10.53 2.48 -113.03 -0.28 -10.81 16 6 S 2.69 37.58 5.59 -107.50 -0.60 36.97 16 7 O -0.96 -15.35 15.99 -57.17 -0.91 -16.26 16 8 O -0.96 -15.27 15.73 -57.17 -0.90 -16.17 16 9 C -0.70 -10.70 5.43 -39.58 -0.22 -10.91 16 10 C -0.02 -0.35 7.84 -39.58 -0.31 -0.66 16 11 C -0.14 -2.48 9.70 -39.58 -0.38 -2.86 16 12 C 0.03 0.63 5.07 -104.63 -0.53 0.10 16 13 C 0.01 0.14 4.17 -29.04 -0.12 0.02 16 14 C -0.52 -14.19 9.65 -34.44 -0.33 -14.52 16 15 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 18 Si 0.88 20.47 27.47 -169.99 -4.67 15.80 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 22 C -0.14 -2.47 9.70 -39.58 -0.38 -2.86 16 23 C -0.02 -0.36 9.52 -39.58 -0.38 -0.73 16 24 C 0.12 1.02 6.07 -3.00 -0.02 1.00 16 25 C -0.16 -1.20 5.79 -26.98 -0.16 -1.35 16 26 C 0.07 0.68 6.38 36.42 0.23 0.91 16 27 O -0.38 -4.10 9.47 -26.53 -0.25 -4.35 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.94 6.84 -51.93 -0.36 0.59 16 32 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 33 H 0.13 1.75 7.57 -52.49 -0.40 1.35 16 34 H 0.13 2.16 8.06 -52.49 -0.42 1.73 16 35 H 0.03 0.75 7.14 -51.93 -0.37 0.37 16 36 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.13 1.70 7.62 -52.49 -0.40 1.30 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.75 7.25 -51.93 -0.38 0.38 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.58 8.01 -51.93 -0.42 0.16 16 44 H 0.06 0.62 7.01 -51.93 -0.36 0.25 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 368.58 15.07 5.55 5.55 Total: -1.00 -33.17 368.58 -10.51 -43.68 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.78 Total: 0.83 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: -2.44 Total: -29.36 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.49 Total: -36.69 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -2.06 Total: -36.78 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.80 kcal Atomic # 16 Polarization: 37.58 SS G_CDS: -0.60 Total: 36.97 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.17 -10.51 -43.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884997187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.608 kcal (2) G-P(sol) polarization free energy of solvation -33.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds