Wall clock time and date at job start Tue Mar 31 2020 23:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46744 * 2 1 4 4 C 1.54810 * 109.47179 * 240.00744 * 2 1 3 5 5 N 1.45121 * 109.53120 * 172.10577 * 4 2 1 6 6 S 1.65608 * 118.75345 * 269.29106 * 5 4 2 7 7 O 1.42104 * 106.39724 * 203.54011 * 6 5 4 8 8 O 1.42097 * 106.40199 * 336.45923 * 6 5 4 9 9 C 1.76195 * 107.21632 * 90.00181 * 6 5 4 10 10 C 1.38239 * 120.00286 * 269.72172 * 9 6 5 11 11 C 1.38237 * 120.00342 * 179.76914 * 10 9 6 12 12 C 1.38231 * 119.99775 * 0.50897 * 11 10 9 13 13 C 1.50693 * 120.00106 * 179.72571 * 12 11 10 14 14 C 1.50700 * 109.47418 * 270.02410 * 13 12 11 15 15 H 1.08000 * 119.99745 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00492 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99912 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99766 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46734 * 90.00357 * 18 16 14 20 20 H 1.48497 * 109.46888 * 210.00158 * 18 16 14 21 21 H 1.48493 * 109.47204 * 330.00471 * 18 16 14 22 22 C 1.38242 * 120.00232 * 359.74450 * 12 11 10 23 23 C 1.38237 * 119.99732 * 0.02562 * 22 12 11 24 24 C 1.47501 * 122.48843 * 89.56574 * 5 4 2 25 25 C 1.53948 * 110.82184 * 317.97979 * 24 5 4 26 26 C 1.51534 * 109.72634 * 320.29982 * 25 24 5 27 27 O 1.38013 * 109.47430 * 119.99214 * 2 1 3 28 28 H 1.09000 * 109.46805 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47063 * 299.99280 * 1 2 3 30 30 H 1.09005 * 109.47038 * 59.99616 * 1 2 3 31 31 H 1.08995 * 109.45760 * 52.08540 * 4 2 1 32 32 H 1.09001 * 109.45785 * 292.12330 * 4 2 1 33 33 H 1.08001 * 119.99420 * 0.02562 * 10 9 6 34 34 H 1.08000 * 119.99492 * 180.23643 * 11 10 9 35 35 H 1.09005 * 109.46954 * 30.02038 * 13 12 11 36 36 H 1.09000 * 109.47455 * 150.01746 * 13 12 11 37 37 H 0.97007 * 119.99559 * 179.97438 * 17 16 14 38 38 H 1.07999 * 119.99959 * 179.97438 * 22 12 11 39 39 H 1.07994 * 119.99872 * 179.97438 * 23 22 12 40 40 H 1.09006 * 109.16617 * 78.49814 * 24 5 4 41 41 H 1.09000 * 109.16898 * 197.69134 * 24 5 4 42 42 H 1.09006 * 109.46019 * 200.17619 * 25 24 5 43 43 H 1.08998 * 109.30236 * 80.32976 * 25 24 5 44 44 H 1.09004 * 109.58879 * 331.51396 * 26 25 24 45 45 H 1.08996 * 109.70990 * 211.14827 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0460 -0.7296 -1.2641 5 7 3.4850 -0.5698 -1.3631 6 16 4.0870 0.7204 -2.2089 7 8 5.3990 0.3565 -2.6157 8 8 3.0706 1.1112 -3.1218 9 6 4.2706 2.0514 -1.0690 10 6 3.2294 2.9384 -0.8685 11 6 3.3718 3.9798 0.0293 12 6 4.5591 4.1404 0.7188 13 6 4.7165 5.2793 1.6930 14 6 5.2636 6.4846 0.9726 15 1 5.4765 6.4311 -0.0848 16 6 5.4935 7.6554 1.6637 17 7 5.9714 8.7070 1.0350 18 14 5.1260 7.7477 3.4929 19 1 6.3328 7.3489 4.2609 20 1 4.7476 9.1380 3.8521 21 1 4.0056 6.8296 3.8196 22 6 5.6022 3.2566 0.5145 23 6 5.4581 2.2124 -0.3799 24 6 4.4317 -1.5164 -0.7438 25 6 3.9603 -1.9185 0.6655 26 6 3.3881 -0.7096 1.3778 27 8 1.9901 -0.6504 1.1269 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.5716 -0.3037 -2.1482 32 1 1.8021 -1.7898 -1.1964 33 1 2.3033 2.8152 -1.4103 34 1 2.5569 4.6704 0.1888 35 1 3.7464 5.5241 2.1257 36 1 5.4046 4.9866 2.4861 37 1 6.1328 9.5308 1.5212 38 1 6.5299 3.3824 1.0529 39 1 6.2731 1.5221 -0.5398 40 1 4.5069 -2.4070 -1.3677 41 1 5.4127 -1.0465 -0.6728 42 1 4.8051 -2.3083 1.2336 43 1 3.1929 -2.6881 0.5828 44 1 3.8653 0.1956 1.0023 45 1 3.5635 -0.7975 2.4499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884997187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:42 Heat of formation + Delta-G solvation = -115.902520 kcal Electronic energy + Delta-G solvation = -28724.753249 eV Core-core repulsion = 24833.277673 eV Total energy + Delta-G solvation = -3891.475576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.72068 -40.25135 -38.54004 -37.09268 -36.68619 -35.57146 -34.57066 -33.58647 -32.02472 -30.96508 -29.74728 -28.02744 -26.00595 -25.30051 -23.81852 -22.60936 -22.31568 -22.02159 -20.10692 -19.20820 -19.04568 -18.60526 -17.82480 -17.47212 -16.88533 -16.69336 -16.49049 -16.01671 -15.83614 -15.57141 -15.22359 -14.80729 -14.63745 -14.51672 -14.25679 -13.98358 -13.92259 -13.75526 -13.64210 -13.46900 -13.29135 -13.22389 -13.20723 -12.72340 -12.68083 -12.57870 -12.53348 -12.17839 -12.11398 -11.97183 -11.79027 -11.73913 -11.55871 -11.41826 -10.84200 -10.60935 -10.04759 -9.99872 -9.83678 -8.35169 -6.42634 -0.75913 -0.13555 0.34343 1.34920 1.36832 1.48092 1.81382 2.31141 2.47629 2.68119 2.78131 2.99364 3.13785 3.59462 3.77544 3.82016 3.90682 3.97139 4.04281 4.12422 4.17701 4.30526 4.34201 4.41194 4.41852 4.58804 4.71823 4.73695 4.78646 4.80528 4.82531 4.90322 4.96466 4.97498 5.04185 5.12147 5.12665 5.16535 5.24214 5.27647 5.34373 5.47324 5.59901 5.73835 5.88979 6.17111 6.63939 6.70939 7.21522 8.81308 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.003549 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.009175 B = 7888.158123 C = 8434.517467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 H 0.039 0.961 4 C 0.075 3.925 5 N -0.986 5.986 6 S 2.703 3.297 7 O -0.979 6.979 8 O -0.979 6.979 9 C -0.701 4.701 10 C -0.021 4.021 11 C -0.151 4.151 12 C 0.000 4.000 13 C 0.013 3.987 14 C -0.527 4.527 15 H 0.026 0.974 16 C 0.011 3.989 17 N -0.947 5.947 18 Si 0.952 3.048 19 H -0.263 1.263 20 H -0.284 1.284 21 H -0.243 1.243 22 C -0.150 4.150 23 C -0.020 4.020 24 C 0.107 3.893 25 C -0.152 4.152 26 C 0.063 3.937 27 O -0.393 6.393 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.151 0.849 34 H 0.133 0.867 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.269 0.731 38 H 0.136 0.864 39 H 0.155 0.845 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.087 0.913 44 H 0.042 0.958 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.732 -25.747 0.841 27.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.009 3.991 3 H 0.057 0.943 4 C -0.050 4.050 5 N -0.825 5.825 6 S 2.795 3.205 7 O -0.969 6.969 8 O -0.970 6.970 9 C -0.789 4.789 10 C -0.040 4.040 11 C -0.170 4.170 12 C 0.000 4.000 13 C -0.024 4.024 14 C -0.565 4.565 15 H 0.045 0.955 16 C -0.187 4.187 17 N -0.587 5.587 18 Si 0.775 3.225 19 H -0.188 1.188 20 H -0.209 1.209 21 H -0.166 1.166 22 C -0.169 4.169 23 C -0.039 4.039 24 C -0.016 4.016 25 C -0.191 4.191 26 C -0.013 4.013 27 O -0.312 6.312 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.168 0.832 34 H 0.151 0.849 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.154 0.846 39 H 0.172 0.828 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.127 0.873 43 H 0.106 0.894 44 H 0.060 0.940 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.595 -25.677 0.075 27.078 hybrid contribution 0.480 1.604 0.890 1.896 sum -8.115 -24.074 0.965 25.423 Atomic orbital electron populations 1.21768 0.90914 1.03947 1.03366 1.22278 0.96532 0.94599 0.85688 0.94284 1.22568 0.78056 1.04816 0.99607 1.57227 1.13966 1.39957 1.71371 1.01517 0.72563 0.72837 0.73586 1.93531 1.39596 1.83043 1.80746 1.93513 1.59515 1.83204 1.60721 1.30838 1.02711 1.22116 1.23197 1.20954 0.97434 0.91862 0.93774 1.21325 0.98461 0.99035 0.98183 1.20586 0.93164 0.92657 0.93640 1.18816 0.98085 0.91242 0.94306 1.21055 1.43668 0.95997 0.95751 0.95522 1.25985 0.93913 0.94704 1.04050 1.70058 1.46148 1.03448 1.39019 0.85631 0.80207 0.78044 0.78648 1.18793 1.20936 1.16593 1.21349 0.99290 0.95597 1.00675 1.21005 0.95118 0.96498 0.91329 1.22087 0.90970 0.93523 0.95046 1.22467 1.03146 0.98907 0.94598 1.22364 0.80486 0.97687 1.00779 1.86227 1.24172 1.76819 1.43940 0.90438 0.91911 0.89565 0.88030 0.86745 0.83179 0.84902 0.94215 0.94172 0.92186 0.84612 0.82787 0.88938 0.89372 0.87304 0.89438 0.93961 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.55 71.98 0.69 -1.34 16 2 C 0.07 1.27 3.25 31.21 0.10 1.37 16 3 H 0.04 0.84 6.13 -2.38 -0.01 0.83 16 4 C 0.08 1.22 5.09 87.26 0.44 1.67 16 5 N -0.99 -18.53 2.48 -511.51 -1.27 -19.80 16 6 S 2.70 71.48 5.59 -56.49 -0.32 71.16 16 7 O -0.98 -29.69 15.99 -128.00 -2.05 -31.73 16 8 O -0.98 -29.84 15.73 -128.00 -2.01 -31.85 16 9 C -0.70 -20.71 5.43 22.27 0.12 -20.59 16 10 C -0.02 -0.65 7.84 22.27 0.17 -0.48 16 11 C -0.15 -5.39 9.70 22.27 0.22 -5.18 16 12 C 0.00 -0.01 5.07 -19.87 -0.10 -0.11 16 13 C 0.01 0.57 4.17 29.10 0.12 0.69 16 14 C -0.53 -29.73 9.65 25.60 0.25 -29.48 16 15 H 0.03 1.70 7.98 -2.91 -0.02 1.68 16 16 C 0.01 0.63 5.47 84.65 0.46 1.10 16 17 N -0.95 -58.49 13.96 21.45 0.30 -58.19 16 18 Si 0.95 42.22 27.47 68.60 1.88 44.10 16 19 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 22 C -0.15 -5.25 9.70 22.27 0.22 -5.04 16 23 C -0.02 -0.61 9.52 22.27 0.21 -0.40 16 24 C 0.11 1.52 6.07 86.51 0.52 2.05 16 25 C -0.15 -1.75 5.79 30.43 0.18 -1.57 16 26 C 0.06 1.05 6.38 71.50 0.46 1.51 16 27 O -0.39 -7.62 9.47 -117.84 -1.12 -8.74 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.10 1.67 6.84 -2.39 -0.02 1.66 16 32 H 0.11 1.38 8.11 -2.39 -0.02 1.36 16 33 H 0.15 3.92 7.57 -2.91 -0.02 3.90 16 34 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 35 H 0.04 1.72 7.14 -2.38 -0.02 1.70 16 36 H 0.04 1.70 7.51 -2.39 -0.02 1.68 16 37 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 38 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 39 H 0.15 3.79 7.62 -2.91 -0.02 3.77 16 40 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.09 1.27 7.25 -2.39 -0.02 1.25 16 42 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.09 0.93 8.01 -2.39 -0.02 0.91 16 44 H 0.04 0.83 7.01 -2.38 -0.02 0.82 16 45 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -73.44 368.58 0.41 -73.03 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.92 Total: 17.82 kcal Atomic # 6 Polarization: -59.86 SS G_CDS: 4.06 Total: -55.80 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -0.97 Total: -77.99 kcal Atomic # 8 Polarization: -67.15 SS G_CDS: -5.18 Total: -72.32 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.88 Total: 44.10 kcal Atomic # 16 Polarization: 71.48 SS G_CDS: -0.32 Total: 71.16 kcal Total: -73.44 0.41 -73.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884997187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.874 kcal (2) G-P(sol) polarization free energy of solvation -73.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds