Wall clock time and date at job start Tue Mar 31 2020 23:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 108.57593 * 2 1 4 4 C 1.46919 * 108.62235 * 117.95016 * 2 1 3 5 5 N 1.50113 * 106.78227 * 177.91563 * 4 2 1 6 6 S 1.65602 * 120.63447 * 111.33864 * 5 4 2 7 7 O 1.42099 * 106.40351 * 336.46769 * 6 5 4 8 8 O 1.42097 * 106.40328 * 203.54046 * 6 5 4 9 9 C 1.76201 * 107.21459 * 90.00503 * 6 5 4 10 10 C 1.38229 * 120.00412 * 90.00016 * 9 6 5 11 11 C 1.38234 * 120.00276 * 180.02562 * 10 9 6 12 12 C 1.38230 * 120.00084 * 359.94917 * 11 10 9 13 13 C 1.50701 * 120.00215 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46789 * 90.00549 * 13 12 11 15 15 H 1.08006 * 120.00159 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00120 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00089 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99938 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 C 1.38241 * 119.99907 * 0.28175 * 12 11 10 23 23 C 1.38229 * 119.99913 * 359.51419 * 22 12 11 24 24 C 1.43420 * 118.72850 * 291.61966 * 5 4 2 25 25 C 1.54785 * 116.58303 * 89.21900 * 24 5 4 26 26 C 1.55193 * 108.79746 * 319.48917 * 25 24 5 27 27 O 1.39644 * 110.57148 * 322.07844 * 26 25 24 28 28 H 1.09002 * 109.46854 * 302.05672 * 1 2 3 29 29 H 1.08998 * 109.47050 * 62.05544 * 1 2 3 30 30 H 1.09001 * 109.47445 * 182.05118 * 1 2 3 31 31 H 1.09004 * 109.99304 * 58.59674 * 4 2 1 32 32 H 1.09007 * 109.98505 * 297.23243 * 4 2 1 33 33 H 1.08001 * 119.99747 * 359.97438 * 10 9 6 34 34 H 1.08007 * 119.99548 * 179.97438 * 11 10 9 35 35 H 1.09003 * 109.46938 * 330.00956 * 13 12 11 36 36 H 1.08996 * 109.47532 * 210.00377 * 13 12 11 37 37 H 0.96998 * 119.99255 * 0.02562 * 17 16 14 38 38 H 1.07997 * 119.99769 * 179.72171 * 22 12 11 39 39 H 1.08002 * 120.00284 * 180.25455 * 23 22 12 40 40 H 1.08999 * 108.12394 * 210.83829 * 24 5 4 41 41 H 1.09007 * 108.12650 * 327.31291 * 24 5 4 42 42 H 1.09000 * 109.66782 * 199.66531 * 25 24 5 43 43 H 1.08998 * 109.65517 * 79.30866 * 25 24 5 44 44 H 1.08993 * 109.25943 * 201.79240 * 26 25 24 45 45 H 1.09005 * 109.22359 * 82.33365 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8772 1.0332 0.0000 4 6 1.9992 -0.6526 1.2299 5 7 3.4986 -0.6763 1.1631 6 16 4.4040 0.2512 2.1938 7 8 3.5676 1.3220 2.6096 8 8 5.6600 0.4473 1.5589 9 6 4.7187 -0.7206 3.6295 10 6 5.8443 -1.5208 3.6895 11 6 6.0909 -2.2836 4.8157 12 6 5.2125 -2.2454 5.8823 13 6 5.4816 -3.0766 7.1102 14 6 6.3063 -2.2779 8.0865 15 1 6.6053 -1.2691 7.8423 16 6 6.6793 -2.8348 9.2914 17 7 6.3148 -4.0629 9.5889 18 14 7.7009 -1.8445 10.5017 19 1 9.1438 -2.0715 10.2335 20 1 7.3814 -2.2740 11.8869 21 1 7.3899 -0.4007 10.3470 22 6 4.0843 -1.4489 5.8204 23 6 3.8399 -0.6829 4.6961 24 6 4.1319 -1.5129 0.1854 25 6 4.3969 -0.8789 -1.2016 26 6 3.1709 -0.0143 -1.5986 27 8 1.9846 -0.6296 -1.1934 28 1 -0.3633 0.5455 0.8710 29 1 -0.3633 0.4816 -0.9078 30 1 -0.3634 -1.0270 0.0368 31 1 1.6124 -1.6703 1.2826 32 1 1.6739 -0.0836 2.1009 33 1 6.5306 -1.5506 2.8562 34 1 6.9702 -2.9091 4.8622 35 1 6.0257 -3.9776 6.8270 36 1 4.5359 -3.3542 7.5755 37 1 5.7840 -4.5769 8.9605 38 1 3.3957 -1.4225 6.6520 39 1 2.9607 -0.0574 4.6494 40 1 5.0888 -1.8428 0.5901 41 1 3.5093 -2.3957 0.0399 42 1 4.5445 -1.6650 -1.9422 43 1 5.2864 -0.2508 -1.1537 44 1 3.1574 0.1149 -2.6808 45 1 3.2506 0.9623 -1.1210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884997188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:47 Heat of formation + Delta-G solvation = -97.150351 kcal Electronic energy + Delta-G solvation = -27904.331042 eV Core-core repulsion = 24013.668621 eV Total energy + Delta-G solvation = -3890.662421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.24355 -38.92522 -37.34229 -35.95405 -35.80775 -34.08331 -34.03338 -31.55635 -30.69262 -30.28400 -27.27624 -27.10953 -25.36510 -23.57178 -22.47788 -21.94167 -21.73358 -21.12223 -19.05594 -18.07362 -17.57002 -17.05708 -16.92879 -16.49583 -15.72851 -15.50692 -15.10191 -14.96911 -14.50374 -14.13066 -13.85924 -13.76289 -13.64100 -13.32603 -13.25274 -13.19090 -12.70944 -12.63912 -12.46399 -12.33025 -12.18806 -12.08976 -11.92415 -11.82907 -11.66359 -11.39054 -11.07320 -10.95568 -10.89446 -10.75675 -10.58952 -10.25530 -10.07279 -9.94706 -9.34599 -9.26173 -8.69780 -8.51384 -8.33168 -6.53785 -4.26640 0.33509 1.21953 1.68293 2.82005 3.36421 3.39398 3.52920 3.55644 3.67578 3.97178 4.18001 4.42925 4.45223 4.50965 4.63923 4.72988 4.78438 4.89545 4.94240 5.06539 5.12299 5.15865 5.23483 5.29017 5.34134 5.45307 5.49479 5.56695 5.59795 5.60479 5.69682 5.73355 5.78626 5.81782 5.94088 6.12447 6.20235 6.32584 6.43376 6.69110 6.71813 6.87687 6.94507 7.27309 7.34250 7.90500 8.26711 8.67046 9.44592 10.85758 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024264 B = 0.002654 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.710838 B =10548.222220 C =10761.991493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.060 3.940 3 H 0.068 0.932 4 C 0.101 3.899 5 N -0.997 5.997 6 S 2.691 3.309 7 O -0.963 6.963 8 O -0.958 6.958 9 C -0.702 4.702 10 C -0.022 4.022 11 C -0.145 4.145 12 C 0.031 3.969 13 C 0.027 3.973 14 C -0.598 4.598 15 H 0.053 0.947 16 C 0.020 3.980 17 N -0.907 5.907 18 Si 1.074 2.926 19 H -0.286 1.286 20 H -0.282 1.282 21 H -0.287 1.287 22 C -0.145 4.145 23 C -0.023 4.023 24 C 0.127 3.873 25 C -0.168 4.168 26 C 0.052 3.948 27 O -0.348 6.348 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.025 0.975 36 H 0.026 0.974 37 H 0.270 0.730 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 5.921 -21.883 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.001 3.999 3 H 0.086 0.914 4 C -0.022 4.022 5 N -0.833 5.833 6 S 2.785 3.215 7 O -0.953 6.953 8 O -0.949 6.949 9 C -0.792 4.792 10 C -0.042 4.042 11 C -0.164 4.164 12 C 0.031 3.969 13 C -0.010 4.010 14 C -0.636 4.636 15 H 0.071 0.929 16 C -0.184 4.184 17 N -0.542 5.542 18 Si 0.901 3.099 19 H -0.212 1.212 20 H -0.208 1.208 21 H -0.213 1.213 22 C -0.164 4.164 23 C -0.042 4.042 24 C 0.000 4.000 25 C -0.208 4.208 26 C -0.026 4.026 27 O -0.266 6.266 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.950 6.538 -20.648 23.434 hybrid contribution -0.458 -0.429 -0.893 1.091 sum -9.407 6.109 -21.541 24.286 Atomic orbital electron populations 1.21959 0.93120 1.03255 1.03012 1.21487 0.95810 0.96426 0.86223 0.91373 1.21670 0.77830 1.03513 0.99231 1.57765 1.15411 1.63283 1.46873 1.01872 0.72925 0.73485 0.73186 1.93544 1.68351 1.50557 1.82851 1.93554 1.41747 1.84503 1.75063 1.30391 1.06931 1.21915 1.19931 1.20762 0.93550 0.91777 0.98080 1.21219 1.00424 1.01267 0.93447 1.20869 0.90285 0.91273 0.94484 1.18657 0.97708 0.94749 0.89901 1.21859 1.36676 1.01776 1.03251 0.92861 1.25925 0.97518 0.97078 0.97918 1.70775 1.35103 1.09500 1.38849 0.83468 0.75886 0.74726 0.75808 1.21224 1.20772 1.21293 1.21217 0.98921 0.98203 0.98018 1.20754 0.96508 0.94912 0.92044 1.20555 0.97922 0.93144 0.88349 1.23359 0.98948 1.01303 0.97225 1.22597 0.84882 0.95271 0.99822 1.87688 1.39121 1.59694 1.40086 0.90834 0.91546 0.91504 0.89297 0.87566 0.85230 0.85363 0.95639 0.95627 0.91990 0.85357 0.85237 0.91014 0.90349 0.89870 0.90097 0.90374 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.42 37.16 0.35 -0.68 16 2 C 0.06 0.51 2.62 -29.64 -0.08 0.44 16 3 H 0.07 0.61 6.76 -51.93 -0.35 0.26 16 4 C 0.10 0.91 5.43 -4.93 -0.03 0.88 16 5 N -1.00 -10.79 2.91 -115.89 -0.34 -11.12 16 6 S 2.69 37.72 5.64 -107.50 -0.61 37.11 16 7 O -0.96 -15.02 16.08 -57.17 -0.92 -15.94 16 8 O -0.96 -15.22 16.36 -57.17 -0.94 -16.16 16 9 C -0.70 -11.14 5.97 -39.58 -0.24 -11.37 16 10 C -0.02 -0.37 9.52 -39.59 -0.38 -0.74 16 11 C -0.14 -2.71 9.70 -39.59 -0.38 -3.10 16 12 C 0.03 0.65 5.07 -104.62 -0.53 0.12 16 13 C 0.03 0.65 4.42 -29.03 -0.13 0.52 16 14 C -0.60 -16.43 9.09 -34.44 -0.31 -16.75 16 15 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 17 N -0.91 -26.68 13.65 55.43 0.76 -25.92 16 18 Si 1.07 24.77 29.90 -169.99 -5.08 19.68 16 19 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.14 -2.70 9.70 -39.58 -0.38 -3.08 16 23 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16 24 C 0.13 1.24 4.88 -4.73 -0.02 1.21 16 25 C -0.17 -1.46 6.74 -24.63 -0.17 -1.63 16 26 C 0.05 0.45 6.38 38.32 0.24 0.69 16 27 O -0.35 -3.30 9.83 -31.95 -0.31 -3.62 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.11 0.89 7.27 -51.92 -0.38 0.51 16 33 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 34 H 0.13 2.28 8.06 -52.48 -0.42 1.86 16 35 H 0.03 0.64 7.95 -51.93 -0.41 0.22 16 36 H 0.03 0.64 7.95 -51.93 -0.41 0.22 16 37 H 0.27 7.82 7.22 -40.82 -0.29 7.52 16 38 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 39 H 0.13 1.76 7.62 -52.49 -0.40 1.36 16 40 H 0.07 0.69 7.72 -51.93 -0.40 0.29 16 41 H 0.08 0.68 7.99 -51.93 -0.41 0.27 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.48 6.66 -51.93 -0.35 0.13 16 LS Contribution 375.23 15.07 5.65 5.65 Total: -1.00 -33.07 375.23 -11.13 -44.19 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.82 Total: -0.12 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: -2.53 Total: -33.76 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.42 Total: -37.05 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -2.17 Total: -35.72 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.68 kcal Atomic # 16 Polarization: 37.72 SS G_CDS: -0.61 Total: 37.11 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.07 -11.13 -44.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884997188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.956 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds