Wall clock time and date at job start Tue Mar 31 2020 23:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 108.57593 * 2 1 4 4 C 1.46919 * 108.62235 * 117.95016 * 2 1 3 5 5 N 1.50113 * 106.78227 * 177.91563 * 4 2 1 6 6 S 1.65602 * 120.63447 * 111.33864 * 5 4 2 7 7 O 1.42099 * 106.40351 * 336.46769 * 6 5 4 8 8 O 1.42097 * 106.40328 * 203.54046 * 6 5 4 9 9 C 1.76201 * 107.21459 * 90.00503 * 6 5 4 10 10 C 1.38229 * 120.00412 * 90.00016 * 9 6 5 11 11 C 1.38234 * 120.00276 * 180.02562 * 10 9 6 12 12 C 1.38230 * 120.00084 * 359.94917 * 11 10 9 13 13 C 1.50701 * 120.00215 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46789 * 90.00549 * 13 12 11 15 15 H 1.08006 * 120.00159 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00120 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00089 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99938 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 C 1.38241 * 119.99907 * 0.28175 * 12 11 10 23 23 C 1.38229 * 119.99913 * 359.51419 * 22 12 11 24 24 C 1.43420 * 118.72850 * 291.61966 * 5 4 2 25 25 C 1.54785 * 116.58303 * 89.21900 * 24 5 4 26 26 C 1.55193 * 108.79746 * 319.48917 * 25 24 5 27 27 O 1.39644 * 110.57148 * 322.07844 * 26 25 24 28 28 H 1.09002 * 109.46854 * 302.05672 * 1 2 3 29 29 H 1.08998 * 109.47050 * 62.05544 * 1 2 3 30 30 H 1.09001 * 109.47445 * 182.05118 * 1 2 3 31 31 H 1.09004 * 109.99304 * 58.59674 * 4 2 1 32 32 H 1.09007 * 109.98505 * 297.23243 * 4 2 1 33 33 H 1.08001 * 119.99747 * 359.97438 * 10 9 6 34 34 H 1.08007 * 119.99548 * 179.97438 * 11 10 9 35 35 H 1.09003 * 109.46938 * 330.00956 * 13 12 11 36 36 H 1.08996 * 109.47532 * 210.00377 * 13 12 11 37 37 H 0.96998 * 119.99255 * 0.02562 * 17 16 14 38 38 H 1.07997 * 119.99769 * 179.72171 * 22 12 11 39 39 H 1.08002 * 120.00284 * 180.25455 * 23 22 12 40 40 H 1.08999 * 108.12394 * 210.83829 * 24 5 4 41 41 H 1.09007 * 108.12650 * 327.31291 * 24 5 4 42 42 H 1.09000 * 109.66782 * 199.66531 * 25 24 5 43 43 H 1.08998 * 109.65517 * 79.30866 * 25 24 5 44 44 H 1.08993 * 109.25943 * 201.79240 * 26 25 24 45 45 H 1.09005 * 109.22359 * 82.33365 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8772 1.0332 0.0000 4 6 1.9992 -0.6526 1.2299 5 7 3.4986 -0.6763 1.1631 6 16 4.4040 0.2512 2.1938 7 8 3.5676 1.3220 2.6096 8 8 5.6600 0.4473 1.5589 9 6 4.7187 -0.7206 3.6295 10 6 5.8443 -1.5208 3.6895 11 6 6.0909 -2.2836 4.8157 12 6 5.2125 -2.2454 5.8823 13 6 5.4816 -3.0766 7.1102 14 6 6.3063 -2.2779 8.0865 15 1 6.6053 -1.2691 7.8423 16 6 6.6793 -2.8348 9.2914 17 7 6.3148 -4.0629 9.5889 18 14 7.7009 -1.8445 10.5017 19 1 9.1438 -2.0715 10.2335 20 1 7.3814 -2.2740 11.8869 21 1 7.3899 -0.4007 10.3470 22 6 4.0843 -1.4489 5.8204 23 6 3.8399 -0.6829 4.6961 24 6 4.1319 -1.5129 0.1854 25 6 4.3969 -0.8789 -1.2016 26 6 3.1709 -0.0143 -1.5986 27 8 1.9846 -0.6296 -1.1934 28 1 -0.3633 0.5455 0.8710 29 1 -0.3633 0.4816 -0.9078 30 1 -0.3634 -1.0270 0.0368 31 1 1.6124 -1.6703 1.2826 32 1 1.6739 -0.0836 2.1009 33 1 6.5306 -1.5506 2.8562 34 1 6.9702 -2.9091 4.8622 35 1 6.0257 -3.9776 6.8270 36 1 4.5359 -3.3542 7.5755 37 1 5.7840 -4.5769 8.9605 38 1 3.3957 -1.4225 6.6520 39 1 2.9607 -0.0574 4.6494 40 1 5.0888 -1.8428 0.5901 41 1 3.5093 -2.3957 0.0399 42 1 4.5445 -1.6650 -1.9422 43 1 5.2864 -0.2508 -1.1537 44 1 3.1574 0.1149 -2.6808 45 1 3.2506 0.9623 -1.1210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884997188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:46 Heat of formation + Delta-G solvation = -117.955939 kcal Electronic energy + Delta-G solvation = -27905.233240 eV Core-core repulsion = 24013.668621 eV Total energy + Delta-G solvation = -3891.564619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.92325 -40.36269 -38.52423 -37.07278 -36.66971 -35.98944 -34.72645 -33.28886 -32.07989 -30.95925 -28.93758 -27.92607 -26.07840 -25.52411 -23.85725 -22.78559 -22.59649 -22.41256 -20.13608 -19.16732 -19.00976 -18.61205 -17.80972 -17.33960 -16.65755 -16.57355 -16.39460 -15.97501 -15.69855 -15.63656 -15.51110 -15.10476 -14.61589 -14.55968 -14.28017 -13.94394 -13.83735 -13.68454 -13.57290 -13.55483 -13.36845 -13.28189 -13.17694 -12.96088 -12.72747 -12.58790 -12.54724 -12.15947 -12.08652 -11.98362 -11.75149 -11.67818 -11.44677 -11.16274 -10.64646 -10.62366 -10.18669 -10.07714 -9.96973 -8.76175 -6.50338 -0.79143 -0.17661 0.28224 1.49620 1.57267 1.76066 1.79912 2.41692 2.51963 2.66150 2.92396 3.06397 3.11168 3.59196 3.74359 3.83262 3.86593 3.98418 4.00908 4.07057 4.15170 4.24226 4.29538 4.34542 4.34824 4.52688 4.67965 4.69989 4.73096 4.74504 4.81694 4.87893 4.93807 4.93923 4.99119 5.03818 5.06744 5.06913 5.19108 5.20886 5.34053 5.57187 5.68726 5.75638 5.86723 6.05944 6.23036 6.45851 7.29019 8.63216 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024264 B = 0.002654 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.710838 B =10548.222220 C =10761.991493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 H 0.062 0.938 4 C 0.094 3.906 5 N -0.989 5.989 6 S 2.712 3.288 7 O -0.976 6.976 8 O -0.975 6.975 9 C -0.700 4.700 10 C -0.019 4.019 11 C -0.155 4.155 12 C -0.001 4.001 13 C 0.032 3.968 14 C -0.609 4.609 15 H 0.045 0.955 16 C -0.029 4.029 17 N -0.931 5.931 18 Si 1.118 2.882 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.273 1.273 22 C -0.154 4.154 23 C -0.018 4.018 24 C 0.116 3.884 25 C -0.168 4.168 26 C 0.047 3.953 27 O -0.356 6.356 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.155 0.845 34 H 0.129 0.871 35 H 0.010 0.990 36 H 0.011 0.989 37 H 0.259 0.741 38 H 0.131 0.869 39 H 0.160 0.840 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.480 7.131 -23.591 26.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.004 4.004 3 H 0.080 0.920 4 C -0.029 4.029 5 N -0.827 5.827 6 S 2.804 3.196 7 O -0.966 6.966 8 O -0.966 6.966 9 C -0.787 4.787 10 C -0.038 4.038 11 C -0.174 4.174 12 C -0.002 4.002 13 C -0.004 4.004 14 C -0.647 4.647 15 H 0.063 0.937 16 C -0.228 4.228 17 N -0.567 5.567 18 Si 0.939 3.061 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.198 1.198 22 C -0.173 4.173 23 C -0.037 4.037 24 C -0.010 4.010 25 C -0.208 4.208 26 C -0.031 4.031 27 O -0.274 6.274 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.132 0.868 33 H 0.173 0.827 34 H 0.147 0.853 35 H 0.028 0.972 36 H 0.029 0.971 37 H 0.069 0.931 38 H 0.149 0.851 39 H 0.177 0.823 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.092 0.908 44 H 0.112 0.888 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.583 7.734 -22.352 25.520 hybrid contribution -0.343 -0.786 -0.543 1.015 sum -9.926 6.948 -22.895 25.903 Atomic orbital electron populations 1.21955 0.91570 1.03814 1.03680 1.21561 0.97043 0.95951 0.85822 0.91976 1.21966 0.76295 1.04811 0.99839 1.57551 1.16153 1.63060 1.45944 1.01287 0.72541 0.73164 0.72602 1.93524 1.68529 1.51344 1.83201 1.93530 1.43183 1.84842 1.75012 1.30899 1.06156 1.20780 1.20833 1.21017 0.94106 0.90890 0.97822 1.21281 1.00251 1.02043 0.93829 1.20628 0.92551 0.92915 0.94056 1.18434 0.96201 0.94546 0.91257 1.22175 1.36744 1.01640 1.04120 0.93685 1.27363 0.98103 0.97274 1.00011 1.70890 1.36410 1.10487 1.38959 0.82913 0.75226 0.74095 0.73878 1.19656 1.20355 1.19803 1.21299 0.98385 0.98443 0.99192 1.21048 0.97412 0.94238 0.90973 1.20792 0.98237 0.93468 0.88549 1.23376 0.98656 1.01734 0.96997 1.22695 0.84657 0.94902 1.00798 1.87681 1.39353 1.59975 1.40390 0.89716 0.91358 0.91026 0.87678 0.86841 0.82717 0.85347 0.97218 0.97095 0.93132 0.85147 0.82279 0.90967 0.89042 0.88110 0.90829 0.88833 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.42 71.98 0.68 -0.95 16 2 C 0.06 0.82 2.62 28.71 0.08 0.90 16 3 H 0.06 1.00 6.76 -2.39 -0.02 0.98 16 4 C 0.09 1.43 5.43 83.79 0.45 1.89 16 5 N -0.99 -19.00 2.91 -520.57 -1.51 -20.51 16 6 S 2.71 70.11 5.64 -56.49 -0.32 69.79 16 7 O -0.98 -28.19 16.08 -128.00 -2.06 -30.24 16 8 O -0.98 -29.07 16.36 -128.00 -2.09 -31.16 16 9 C -0.70 -20.90 5.97 22.27 0.13 -20.77 16 10 C -0.02 -0.61 9.52 22.27 0.21 -0.40 16 11 C -0.16 -5.85 9.70 22.27 0.22 -5.63 16 12 C 0.00 -0.05 5.07 -19.87 -0.10 -0.15 16 13 C 0.03 1.65 4.42 29.10 0.13 1.78 16 14 C -0.61 -34.35 9.09 25.60 0.23 -34.12 16 15 H 0.04 2.55 7.74 -2.91 -0.02 2.53 16 16 C -0.03 -1.65 5.46 84.65 0.46 -1.19 16 17 N -0.93 -56.12 13.65 21.45 0.29 -55.83 16 18 Si 1.12 49.82 29.90 68.60 2.05 51.87 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 22 C -0.15 -5.74 9.70 22.27 0.22 -5.52 16 23 C -0.02 -0.55 9.52 22.27 0.21 -0.33 16 24 C 0.12 1.97 4.88 87.56 0.43 2.40 16 25 C -0.17 -2.53 6.74 31.96 0.22 -2.31 16 26 C 0.05 0.71 6.38 72.73 0.46 1.18 16 27 O -0.36 -5.89 9.83 -137.22 -1.35 -7.24 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.11 1.28 8.14 -2.38 -0.02 1.27 16 32 H 0.11 1.57 7.27 -2.38 -0.02 1.55 16 33 H 0.16 4.04 7.62 -2.91 -0.02 4.02 16 34 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 35 H 0.01 0.51 7.95 -2.39 -0.02 0.49 16 36 H 0.01 0.57 7.95 -2.39 -0.02 0.55 16 37 H 0.26 15.66 7.22 -92.71 -0.67 14.99 16 38 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 39 H 0.16 3.90 7.62 -2.91 -0.02 3.88 16 40 H 0.07 1.22 7.72 -2.39 -0.02 1.20 16 41 H 0.09 1.34 7.99 -2.38 -0.02 1.32 16 42 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.05 0.77 6.66 -2.38 -0.02 0.76 16 Total: -1.00 -71.21 375.23 0.11 -71.10 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 1.08 Total: 15.46 kcal Atomic # 6 Polarization: -67.25 SS G_CDS: 4.03 Total: -63.23 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -1.22 Total: -76.34 kcal Atomic # 8 Polarization: -63.14 SS G_CDS: -5.50 Total: -68.65 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 2.05 Total: 51.87 kcal Atomic # 16 Polarization: 70.11 SS G_CDS: -0.32 Total: 69.79 kcal Total: -71.21 0.11 -71.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884997188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.857 kcal (2) G-P(sol) polarization free energy of solvation -71.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds