Wall clock time and date at job start Tue Mar 31 2020 22:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47044 * 2 1 4 4 H 1.09001 * 109.70424 * 52.57495 * 3 2 1 5 5 C 1.52877 * 109.62051 * 292.27238 * 3 2 1 6 6 O 1.42963 * 109.29410 * 188.11366 * 5 3 2 7 7 C 1.42964 * 114.16926 * 62.45057 * 6 5 3 8 8 C 1.53293 * 109.22054 * 297.41560 * 7 6 5 9 9 N 1.47149 * 108.38516 * 52.30096 * 8 7 6 10 10 S 1.65608 * 120.98375 * 129.44084 * 9 8 7 11 11 O 1.42103 * 106.40038 * 347.89141 * 10 9 8 12 12 O 1.42099 * 106.40260 * 214.97052 * 10 9 8 13 13 C 1.76200 * 107.21787 * 101.42836 * 10 9 8 14 14 C 1.38236 * 119.99985 * 97.22634 * 13 10 9 15 15 C 1.38233 * 120.00382 * 179.97438 * 14 13 10 16 16 C 1.38241 * 119.99671 * 0.02562 * 15 14 13 17 17 C 1.50692 * 119.99997 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47145 * 89.99698 * 17 16 15 19 19 H 1.07998 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37883 * 119.99942 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99961 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99793 * 180.27971 * 20 18 17 23 23 H 1.48501 * 109.47001 * 269.72757 * 22 20 18 24 24 H 1.48506 * 109.47322 * 29.72513 * 22 20 18 25 25 H 1.48499 * 109.47089 * 149.72487 * 22 20 18 26 26 C 1.38237 * 119.99860 * 0.25641 * 16 15 14 27 27 C 1.38233 * 120.00130 * 277.25237 * 13 10 9 28 28 H 1.09008 * 109.47170 * 175.86360 * 1 2 3 29 29 H 1.08998 * 109.47475 * 295.86451 * 1 2 3 30 30 H 1.09003 * 109.47341 * 55.86663 * 1 2 3 31 31 H 1.08997 * 109.47132 * 240.00490 * 2 1 3 32 32 H 1.09000 * 109.47057 * 120.00367 * 2 1 3 33 33 H 1.08997 * 109.58314 * 68.10060 * 5 3 2 34 34 H 1.09004 * 109.40535 * 308.01684 * 5 3 2 35 35 H 1.09000 * 109.51373 * 177.48965 * 7 6 5 36 36 H 1.09008 * 109.51228 * 57.34044 * 7 6 5 37 37 H 1.08997 * 109.68418 * 292.57917 * 8 7 6 38 38 H 1.09006 * 109.68361 * 172.02362 * 8 7 6 39 39 H 1.08003 * 120.00058 * 359.97438 * 14 13 10 40 40 H 1.07996 * 120.00380 * 179.97438 * 15 14 13 41 41 H 1.09002 * 109.47370 * 329.99895 * 17 16 15 42 42 H 1.08999 * 109.47397 * 209.99808 * 17 16 15 43 43 H 0.97000 * 120.00012 * 179.97438 * 21 20 18 44 44 H 1.08001 * 119.99948 * 179.72896 * 26 16 15 45 45 H 1.08005 * 120.00156 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5745 1.9969 0.8149 5 6 1.6965 2.1084 -1.3326 6 8 2.3362 3.3851 -1.4014 7 6 3.7643 3.3268 -1.3673 8 6 4.2129 2.7245 -0.0309 9 7 3.5020 1.4513 0.1663 10 16 4.3238 0.0676 0.5570 11 8 5.7020 0.3487 0.3543 12 8 3.6446 -0.9991 -0.0911 13 6 4.1181 -0.1901 2.2879 14 6 3.1434 -1.0564 2.7466 15 6 2.9823 -1.2591 4.1045 16 6 3.7955 -0.5949 5.0037 17 6 3.6195 -0.8153 6.4840 18 6 4.4912 -1.9615 6.9284 19 1 5.1110 -2.4784 6.2107 20 6 4.4982 -2.3497 8.2514 21 7 3.7439 -1.7200 9.1254 22 14 5.5846 -3.7654 8.8036 23 1 4.8291 -5.0395 8.6978 24 1 6.7898 -3.8312 7.9385 25 1 5.9985 -3.5509 10.2135 26 6 4.7662 0.2759 4.5452 27 6 4.9309 0.4745 3.1871 28 1 -0.3634 -1.0251 -0.0741 29 1 -0.3634 0.4483 0.9247 30 1 -0.3634 0.5766 -0.8506 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.6169 2.2375 -1.4089 34 1 2.0470 1.4808 -2.1520 35 1 4.1722 4.3325 -1.4686 36 1 4.1229 2.7034 -2.1864 37 1 3.9700 3.4101 0.7808 38 1 5.2880 2.5453 -0.0515 39 1 2.5078 -1.5750 2.0441 40 1 2.2206 -1.9356 4.4629 41 1 2.5760 -1.0494 6.6950 42 1 3.9051 0.0884 7.0225 43 1 3.7485 -1.9933 10.0561 44 1 5.3987 0.7981 5.2478 45 1 5.6924 1.1514 2.8287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885016758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:35 Heat of formation + Delta-G solvation = -89.244198 kcal Electronic energy + Delta-G solvation = -28208.709577 eV Core-core repulsion = 24318.389992 eV Total energy + Delta-G solvation = -3890.319585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.80968 -38.86510 -37.58050 -35.97059 -35.59677 -33.82047 -33.67399 -31.60041 -30.65214 -30.02813 -27.50971 -27.01724 -25.19261 -23.74580 -22.51325 -22.15588 -21.54677 -20.88939 -19.02663 -17.88080 -17.37239 -16.86957 -16.47175 -16.19128 -15.56079 -15.33020 -15.19428 -15.07728 -14.88505 -14.42898 -14.39894 -13.80012 -13.73699 -13.45341 -13.13749 -12.92475 -12.85957 -12.47759 -12.28094 -12.11972 -12.08593 -11.75259 -11.69907 -11.52528 -11.48887 -11.39417 -11.04562 -10.97076 -10.80412 -10.68861 -10.51141 -10.45497 -10.21449 -9.75185 -9.67516 -9.07810 -8.62903 -8.56043 -8.40598 -6.19255 -4.24425 0.37273 1.28600 1.74912 2.82395 3.22748 3.29384 3.33699 3.50296 3.69856 4.03163 4.23591 4.32120 4.36826 4.43436 4.70963 4.76173 4.83906 5.00301 5.05020 5.12517 5.13823 5.17381 5.19891 5.23534 5.32126 5.46238 5.49708 5.62080 5.67704 5.72431 5.82306 5.86948 5.93283 5.94193 6.20408 6.20963 6.28197 6.33580 6.48586 6.79342 6.80236 6.87106 7.26074 7.39549 7.55848 7.75717 8.10750 8.80314 9.40659 10.90778 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020345 B = 0.002923 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.949990 B = 9575.664284 C = 9893.034189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.160 4.160 3 C 0.123 3.877 4 H 0.085 0.915 5 C 0.055 3.945 6 O -0.379 6.379 7 C 0.051 3.949 8 C 0.080 3.920 9 N -1.000 6.000 10 S 2.694 3.306 11 O -0.965 6.965 12 O -0.959 6.959 13 C -0.703 4.703 14 C -0.028 4.028 15 C -0.144 4.144 16 C 0.027 3.973 17 C 0.039 3.961 18 C -0.518 4.518 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.891 5.891 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.272 1.272 25 H -0.284 1.284 26 C -0.145 4.145 27 C -0.022 4.022 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.264 0.736 44 H 0.129 0.871 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.494 9.535 -20.426 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.198 4.198 3 C 0.017 3.983 4 H 0.103 0.897 5 C -0.023 4.023 6 O -0.297 6.297 7 C -0.028 4.028 8 C -0.045 4.045 9 N -0.839 5.839 10 S 2.790 3.210 11 O -0.955 6.955 12 O -0.949 6.949 13 C -0.793 4.793 14 C -0.047 4.047 15 C -0.163 4.163 16 C 0.027 3.973 17 C 0.003 3.997 18 C -0.556 4.556 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.529 5.529 22 Si 0.726 3.274 23 H -0.204 1.204 24 H -0.197 1.197 25 H -0.210 1.210 26 C -0.163 4.163 27 C -0.041 4.041 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.147 0.853 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.146 9.203 -20.834 23.150 hybrid contribution 0.536 -0.894 1.368 1.720 sum -3.610 8.309 -19.465 21.470 Atomic orbital electron populations 1.21793 0.94575 1.02533 1.01956 1.22571 0.97204 0.93705 1.06335 1.21708 0.79040 0.98362 0.99238 0.89698 1.22980 0.98505 0.85040 0.95790 1.87951 1.18733 1.28568 1.94420 1.22937 0.81718 1.02145 0.95962 1.22204 0.98132 0.85197 0.98989 1.57939 1.15910 1.24660 1.85341 1.01779 0.72505 0.72415 0.74344 1.93526 1.31560 1.84492 1.85967 1.93612 1.74174 1.53422 1.73687 1.30332 1.10661 1.14009 1.24249 1.20863 0.93870 0.93475 0.96537 1.21252 1.01457 1.01297 0.92267 1.21124 0.89168 0.87744 0.99284 1.18541 0.98612 0.98229 0.84362 1.20968 1.25340 1.15517 0.93810 0.92288 1.25004 0.95667 0.96920 0.96533 1.69943 1.39145 1.40713 1.03135 0.86475 0.80797 0.82168 0.77948 1.20430 1.19685 1.21005 1.21246 0.99680 1.00646 0.94772 1.20708 0.94819 0.95124 0.93460 0.91755 0.92376 0.92506 0.87822 0.90130 0.87544 0.92381 0.87521 0.92556 0.90256 0.87528 0.84837 0.85279 0.94684 0.94700 0.92604 0.85310 0.85609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.80 37.16 0.36 -0.84 16 2 C -0.16 -1.65 3.76 -26.73 -0.10 -1.75 16 3 C 0.12 1.21 3.13 -67.64 -0.21 1.00 16 4 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 5 C 0.06 0.48 5.88 37.09 0.22 0.69 16 6 O -0.38 -3.70 10.74 -35.23 -0.38 -4.08 16 7 C 0.05 0.41 6.98 37.31 0.26 0.67 16 8 C 0.08 0.74 6.73 -3.54 -0.02 0.72 16 9 N -1.00 -11.12 3.35 -106.26 -0.36 -11.47 16 10 S 2.69 37.84 5.24 -107.50 -0.56 37.27 16 11 O -0.96 -15.52 15.90 -57.17 -0.91 -16.43 16 12 O -0.96 -14.44 12.71 -57.17 -0.73 -15.16 16 13 C -0.70 -11.13 5.90 -39.58 -0.23 -11.36 16 14 C -0.03 -0.46 8.54 -39.58 -0.34 -0.80 16 15 C -0.14 -2.65 9.70 -39.58 -0.38 -3.03 16 16 C 0.03 0.56 5.07 -104.63 -0.53 0.03 16 17 C 0.04 0.96 5.10 -29.04 -0.15 0.81 16 18 C -0.52 -14.02 9.09 -34.44 -0.31 -14.33 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 22 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 26 C -0.14 -2.68 9.70 -39.58 -0.38 -3.07 16 27 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 28 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.36 6.68 -51.93 -0.35 0.01 16 31 H 0.10 1.15 6.56 -51.93 -0.34 0.81 16 32 H 0.08 0.94 3.21 -51.93 -0.17 0.77 16 33 H 0.11 0.71 6.97 -51.93 -0.36 0.35 16 34 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 35 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.11 0.96 6.77 -51.93 -0.35 0.60 16 39 H 0.13 1.86 5.81 -52.48 -0.31 1.55 16 40 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 41 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 42 H 0.03 0.88 8.08 -51.93 -0.42 0.47 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 45 H 0.13 1.75 7.79 -52.48 -0.41 1.34 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -32.08 365.54 -10.47 -42.55 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.47 Total: 0.89 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: -2.30 Total: -30.41 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.38 Total: -36.17 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -2.01 Total: -35.67 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 37.84 SS G_CDS: -0.56 Total: 37.27 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.08 -10.47 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885016758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.691 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds