Wall clock time and date at job start Tue Mar 31 2020 22:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47044 * 2 1 4 4 H 1.09001 * 109.70424 * 52.57495 * 3 2 1 5 5 C 1.52877 * 109.62051 * 292.27238 * 3 2 1 6 6 O 1.42963 * 109.29410 * 188.11366 * 5 3 2 7 7 C 1.42964 * 114.16926 * 62.45057 * 6 5 3 8 8 C 1.53293 * 109.22054 * 297.41560 * 7 6 5 9 9 N 1.47149 * 108.38516 * 52.30096 * 8 7 6 10 10 S 1.65608 * 120.98375 * 129.44084 * 9 8 7 11 11 O 1.42103 * 106.40038 * 347.89141 * 10 9 8 12 12 O 1.42099 * 106.40260 * 214.97052 * 10 9 8 13 13 C 1.76200 * 107.21787 * 101.42836 * 10 9 8 14 14 C 1.38236 * 119.99985 * 97.22634 * 13 10 9 15 15 C 1.38233 * 120.00382 * 179.97438 * 14 13 10 16 16 C 1.38241 * 119.99671 * 0.02562 * 15 14 13 17 17 C 1.50692 * 119.99997 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47145 * 89.99698 * 17 16 15 19 19 H 1.07998 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37883 * 119.99942 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99961 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99793 * 180.27971 * 20 18 17 23 23 H 1.48501 * 109.47001 * 269.72757 * 22 20 18 24 24 H 1.48506 * 109.47322 * 29.72513 * 22 20 18 25 25 H 1.48499 * 109.47089 * 149.72487 * 22 20 18 26 26 C 1.38237 * 119.99860 * 0.25641 * 16 15 14 27 27 C 1.38233 * 120.00130 * 277.25237 * 13 10 9 28 28 H 1.09008 * 109.47170 * 175.86360 * 1 2 3 29 29 H 1.08998 * 109.47475 * 295.86451 * 1 2 3 30 30 H 1.09003 * 109.47341 * 55.86663 * 1 2 3 31 31 H 1.08997 * 109.47132 * 240.00490 * 2 1 3 32 32 H 1.09000 * 109.47057 * 120.00367 * 2 1 3 33 33 H 1.08997 * 109.58314 * 68.10060 * 5 3 2 34 34 H 1.09004 * 109.40535 * 308.01684 * 5 3 2 35 35 H 1.09000 * 109.51373 * 177.48965 * 7 6 5 36 36 H 1.09008 * 109.51228 * 57.34044 * 7 6 5 37 37 H 1.08997 * 109.68418 * 292.57917 * 8 7 6 38 38 H 1.09006 * 109.68361 * 172.02362 * 8 7 6 39 39 H 1.08003 * 120.00058 * 359.97438 * 14 13 10 40 40 H 1.07996 * 120.00380 * 179.97438 * 15 14 13 41 41 H 1.09002 * 109.47370 * 329.99895 * 17 16 15 42 42 H 1.08999 * 109.47397 * 209.99808 * 17 16 15 43 43 H 0.97000 * 120.00012 * 179.97438 * 21 20 18 44 44 H 1.08001 * 119.99948 * 179.72896 * 26 16 15 45 45 H 1.08005 * 120.00156 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5745 1.9969 0.8149 5 6 1.6965 2.1084 -1.3326 6 8 2.3362 3.3851 -1.4014 7 6 3.7643 3.3268 -1.3673 8 6 4.2129 2.7245 -0.0309 9 7 3.5020 1.4513 0.1663 10 16 4.3238 0.0676 0.5570 11 8 5.7020 0.3487 0.3543 12 8 3.6446 -0.9991 -0.0911 13 6 4.1181 -0.1901 2.2879 14 6 3.1434 -1.0564 2.7466 15 6 2.9823 -1.2591 4.1045 16 6 3.7955 -0.5949 5.0037 17 6 3.6195 -0.8153 6.4840 18 6 4.4912 -1.9615 6.9284 19 1 5.1110 -2.4784 6.2107 20 6 4.4982 -2.3497 8.2514 21 7 3.7439 -1.7200 9.1254 22 14 5.5846 -3.7654 8.8036 23 1 4.8291 -5.0395 8.6978 24 1 6.7898 -3.8312 7.9385 25 1 5.9985 -3.5509 10.2135 26 6 4.7662 0.2759 4.5452 27 6 4.9309 0.4745 3.1871 28 1 -0.3634 -1.0251 -0.0741 29 1 -0.3634 0.4483 0.9247 30 1 -0.3634 0.5766 -0.8506 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.6169 2.2375 -1.4089 34 1 2.0470 1.4808 -2.1520 35 1 4.1722 4.3325 -1.4686 36 1 4.1229 2.7034 -2.1864 37 1 3.9700 3.4101 0.7808 38 1 5.2880 2.5453 -0.0515 39 1 2.5078 -1.5750 2.0441 40 1 2.2206 -1.9356 4.4629 41 1 2.5760 -1.0494 6.6950 42 1 3.9051 0.0884 7.0225 43 1 3.7485 -1.9933 10.0561 44 1 5.3987 0.7981 5.2478 45 1 5.6924 1.1514 2.8287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885016758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:34 Heat of formation + Delta-G solvation = -109.618585 kcal Electronic energy + Delta-G solvation = -28209.593076 eV Core-core repulsion = 24318.389992 eV Total energy + Delta-G solvation = -3891.203084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.54727 -40.27961 -38.70639 -37.09412 -36.44942 -35.62315 -34.54812 -33.35572 -32.02764 -30.70782 -29.29369 -27.79053 -25.89788 -25.59820 -23.82177 -22.96222 -22.45874 -22.33033 -20.13210 -19.01688 -18.58699 -18.31316 -17.71268 -17.04594 -16.88730 -16.49324 -16.25499 -16.07923 -15.89317 -15.71751 -15.62711 -15.11839 -14.64834 -14.61867 -14.41074 -14.07281 -13.94078 -13.78946 -13.43447 -13.42954 -13.27111 -13.23620 -13.08623 -12.69971 -12.67885 -12.39173 -12.23764 -12.22219 -12.12380 -12.03754 -11.70166 -11.66547 -11.36999 -11.30972 -11.02095 -10.67011 -10.04599 -10.00278 -9.80647 -8.28760 -6.41723 -0.74950 -0.10564 0.35011 1.37387 1.37719 1.49234 1.79899 2.33133 2.51699 2.71838 2.88567 3.03908 3.17816 3.50464 3.68221 3.78638 3.90094 3.99454 4.09956 4.11932 4.18735 4.30518 4.40228 4.43013 4.45869 4.47889 4.61260 4.69140 4.76754 4.78879 4.83933 4.87865 4.96428 5.05062 5.11060 5.19235 5.20841 5.23805 5.30038 5.30882 5.43464 5.56936 5.65168 5.82566 5.88335 6.07447 6.15923 6.69929 7.27488 8.81354 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020345 B = 0.002923 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.949990 B = 9575.664284 C = 9893.034189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.163 4.163 3 C 0.119 3.881 4 H 0.090 0.910 5 C 0.055 3.945 6 O -0.390 6.390 7 C 0.049 3.951 8 C 0.071 3.929 9 N -0.995 5.995 10 S 2.713 3.287 11 O -0.983 6.983 12 O -0.968 6.968 13 C -0.702 4.702 14 C -0.022 4.022 15 C -0.153 4.153 16 C -0.003 4.003 17 C 0.049 3.951 18 C -0.535 4.535 19 H 0.053 0.947 20 C 0.010 3.990 21 N -0.925 5.925 22 Si 0.964 3.036 23 H -0.271 1.271 24 H -0.268 1.268 25 H -0.278 1.278 26 C -0.154 4.154 27 C -0.019 4.019 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.127 0.873 34 H 0.060 0.940 35 H 0.132 0.868 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.158 0.842 40 H 0.131 0.869 41 H 0.014 0.986 42 H 0.013 0.987 43 H 0.268 0.732 44 H 0.131 0.869 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.385 10.010 -22.617 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.201 4.201 3 C 0.014 3.986 4 H 0.108 0.892 5 C -0.023 4.023 6 O -0.309 6.309 7 C -0.029 4.029 8 C -0.053 4.053 9 N -0.835 5.835 10 S 2.807 3.193 11 O -0.973 6.973 12 O -0.958 6.958 13 C -0.789 4.789 14 C -0.041 4.041 15 C -0.172 4.172 16 C -0.003 4.003 17 C 0.012 3.988 18 C -0.573 4.573 19 H 0.072 0.928 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.789 3.211 23 H -0.196 1.196 24 H -0.193 1.193 25 H -0.203 1.203 26 C -0.173 4.173 27 C -0.038 4.038 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.145 0.855 34 H 0.079 0.921 35 H 0.150 0.850 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.175 0.825 40 H 0.149 0.851 41 H 0.032 0.968 42 H 0.032 0.968 43 H 0.077 0.923 44 H 0.148 0.852 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.036 9.670 -23.004 25.278 hybrid contribution 0.464 -0.954 1.909 2.184 sum -3.572 8.716 -21.095 23.102 Atomic orbital electron populations 1.21796 0.92858 1.03061 1.02976 1.22549 0.98814 0.93688 1.05046 1.21881 0.78002 0.98320 1.00410 0.89238 1.23084 0.99740 0.84678 0.94805 1.87943 1.19534 1.29054 1.94334 1.23102 0.81102 1.03587 0.95140 1.22476 0.98224 0.84330 1.00284 1.57767 1.16615 1.24547 1.84561 1.01267 0.72058 0.72787 0.73232 1.93500 1.33040 1.84991 1.85798 1.93610 1.74222 1.54692 1.73265 1.30850 1.09476 1.12721 1.25836 1.21099 0.94035 0.93192 0.95801 1.21312 1.01377 1.01354 0.93138 1.20831 0.91692 0.90480 0.97305 1.18262 0.96789 0.96535 0.87244 1.21286 1.25599 1.16298 0.94100 0.92833 1.25863 0.96937 0.99468 0.96620 1.70050 1.40556 1.42275 1.03524 0.85455 0.79011 0.79051 0.77625 1.19606 1.19259 1.20277 1.21309 0.99387 1.00519 0.96091 1.20979 0.95220 0.95217 0.92421 0.91706 0.92205 0.90502 0.88646 0.91761 0.85479 0.92124 0.85050 0.92275 0.89191 0.87276 0.82487 0.85109 0.96776 0.96831 0.92336 0.85156 0.82914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.80 71.98 0.71 -1.35 16 2 C -0.16 -3.04 3.76 30.59 0.12 -2.92 16 3 C 0.12 2.08 3.13 44.83 0.14 2.22 16 4 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 5 C 0.06 0.79 5.88 71.94 0.42 1.22 16 6 O -0.39 -6.47 10.74 -148.98 -1.60 -8.07 16 7 C 0.05 0.65 6.98 72.08 0.50 1.15 16 8 C 0.07 1.14 6.73 86.35 0.58 1.72 16 9 N -0.99 -19.90 3.35 -490.10 -1.64 -21.54 16 10 S 2.71 71.36 5.24 -56.49 -0.30 71.07 16 11 O -0.98 -29.76 15.90 -128.00 -2.03 -31.79 16 12 O -0.97 -27.54 12.71 -128.00 -1.63 -29.17 16 13 C -0.70 -21.34 5.90 22.27 0.13 -21.21 16 14 C -0.02 -0.71 8.54 22.27 0.19 -0.52 16 15 C -0.15 -5.73 9.70 22.27 0.22 -5.51 16 16 C 0.00 -0.12 5.07 -19.87 -0.10 -0.22 16 17 C 0.05 2.50 5.10 29.10 0.15 2.64 16 18 C -0.54 -29.84 9.09 25.60 0.23 -29.61 16 19 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 20 C 0.01 0.57 5.46 84.66 0.46 1.03 16 21 N -0.92 -54.13 13.29 21.45 0.28 -53.85 16 22 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 26 C -0.15 -5.80 9.70 22.27 0.22 -5.58 16 27 C -0.02 -0.61 9.52 22.27 0.21 -0.40 16 28 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.74 6.68 -2.39 -0.02 0.72 16 31 H 0.10 1.95 6.56 -2.39 -0.02 1.93 16 32 H 0.06 1.40 3.21 -2.39 -0.01 1.39 16 33 H 0.13 1.27 6.97 -2.39 -0.02 1.26 16 34 H 0.06 0.85 8.09 -2.39 -0.02 0.83 16 35 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.11 1.70 6.77 -2.38 -0.02 1.68 16 39 H 0.16 4.17 5.81 -2.91 -0.02 4.15 16 40 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 41 H 0.01 0.76 8.09 -2.39 -0.02 0.74 16 42 H 0.01 0.73 8.08 -2.39 -0.02 0.71 16 43 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 44 H 0.13 4.71 8.06 -2.91 -0.02 4.68 16 45 H 0.15 3.94 7.79 -2.91 -0.02 3.92 16 Total: -1.00 -69.35 365.54 0.28 -69.07 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.99 Total: 16.04 kcal Atomic # 6 Polarization: -61.51 SS G_CDS: 4.18 Total: -57.33 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -1.36 Total: -75.39 kcal Atomic # 8 Polarization: -63.77 SS G_CDS: -5.26 Total: -69.04 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 71.36 SS G_CDS: -0.30 Total: 71.07 kcal Total: -69.35 0.28 -69.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885016758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.551 kcal (2) G-P(sol) polarization free energy of solvation -69.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds