Wall clock time and date at job start Tue Mar 31 2020 23:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 N 1.46505 * 109.46707 * 60.00045 * 4 2 1 6 6 S 1.65604 * 119.99753 * 164.99922 * 5 4 2 7 7 O 1.42101 * 106.40130 * 178.53840 * 6 5 4 8 8 O 1.42097 * 106.40206 * 311.46034 * 6 5 4 9 9 C 1.76200 * 107.21680 * 64.99816 * 6 5 4 10 10 C 1.38236 * 120.00223 * 269.72624 * 9 6 5 11 11 C 1.38233 * 119.99957 * 179.76770 * 10 9 6 12 12 C 1.38240 * 119.99968 * 0.50281 * 11 10 9 13 13 C 1.50701 * 119.99839 * 179.72232 * 12 11 10 14 14 C 1.50698 * 109.47645 * 270.02658 * 13 12 11 15 15 H 1.08004 * 119.99567 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00298 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00188 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00312 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46960 * 59.99850 * 18 16 14 20 20 H 1.48494 * 109.47614 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47054 * 300.00382 * 18 16 14 22 22 C 1.38230 * 120.00152 * 359.75387 * 12 11 10 23 23 C 1.38239 * 119.99995 * 359.97438 * 22 12 11 24 24 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 25 25 C 1.53001 * 117.51964 * 231.28841 * 24 2 1 26 26 C 1.52999 * 60.00190 * 107.47982 * 25 24 2 27 27 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 28 28 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 29 29 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 30 30 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 33 33 H 0.96997 * 120.00544 * 344.99726 * 5 4 2 34 34 H 1.07991 * 119.99988 * 359.97438 * 10 9 6 35 35 H 1.08002 * 120.00400 * 180.23045 * 11 10 9 36 36 H 1.09007 * 109.47207 * 30.03003 * 13 12 11 37 37 H 1.09005 * 109.46932 * 150.02229 * 13 12 11 38 38 H 0.96996 * 120.00620 * 180.02562 * 17 16 14 39 39 H 1.07998 * 120.00351 * 179.97438 * 22 12 11 40 40 H 1.08001 * 119.99981 * 179.97438 * 23 22 12 41 41 H 1.09002 * 115.54973 * 85.58625 * 24 2 1 42 42 H 1.09001 * 117.49733 * 214.97413 * 25 24 2 43 43 H 1.08995 * 117.49577 * 359.97438 * 25 24 2 44 44 H 1.09004 * 117.50150 * 252.51496 * 26 25 24 45 45 H 1.09004 * 117.49681 * 107.48417 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.5517 -0.0306 -2.4454 6 16 2.2320 -0.3495 -3.9212 7 8 1.5260 0.4411 -4.8676 8 8 3.6392 -0.2724 -3.7395 9 6 1.8718 -2.0301 -4.3093 10 6 2.7455 -3.0305 -3.9262 11 6 2.4605 -4.3494 -4.2265 12 6 1.3070 -4.6669 -4.9190 13 6 0.9994 -6.1042 -5.2518 14 6 1.5981 -6.4489 -6.5912 15 1 2.1461 -5.7018 -7.1461 16 6 1.4453 -7.7177 -7.1085 17 7 0.7776 -8.6274 -6.4330 18 14 2.1867 -8.1449 -8.7690 19 1 3.6584 -7.9530 -8.7181 20 1 1.8838 -9.5611 -9.0969 21 1 1.6080 -7.2601 -9.8118 22 6 0.4359 -3.6660 -5.3068 23 6 0.7181 -2.3476 -5.0016 24 6 2.0400 -0.7212 1.2493 25 6 3.0757 0.0040 2.1109 26 6 1.6373 -0.1482 2.6097 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 2.9702 1.4238 0.0004 31 1 3.1301 -0.7208 -1.2493 32 1 1.6767 -1.7489 -1.2492 33 1 0.8300 0.6134 -2.3730 34 1 3.6489 -2.7820 -3.3893 35 1 3.1412 -5.1314 -3.9239 36 1 1.4241 -6.7534 -4.4861 37 1 -0.0808 -6.2453 -5.2895 38 1 0.6704 -9.5201 -6.7968 39 1 -0.4650 -3.9140 -5.8482 40 1 0.0378 -1.5656 -5.3049 41 1 2.1253 -1.8046 1.1648 42 1 3.8425 -0.6023 2.5932 43 1 3.3942 0.9949 1.7876 44 1 1.0093 0.7428 2.6145 45 1 1.4577 -0.8547 3.4201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885027388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:50 Heat of formation + Delta-G solvation = -110.243209 kcal Electronic energy + Delta-G solvation = -27167.947503 eV Core-core repulsion = 23276.717333 eV Total energy + Delta-G solvation = -3891.230170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.40030 -40.22291 -38.33960 -36.97123 -36.52905 -35.60228 -35.27154 -33.31663 -31.95686 -31.61168 -29.24474 -27.51583 -25.59206 -23.85261 -23.65098 -23.10253 -22.47348 -21.02563 -20.41525 -19.03928 -18.66429 -18.53769 -17.99706 -17.26488 -16.86763 -16.64970 -16.07513 -15.98460 -15.91096 -15.33124 -15.19844 -15.07176 -14.62097 -14.44569 -13.95208 -13.88725 -13.70689 -13.41110 -13.38062 -13.27941 -13.23368 -13.16384 -13.03601 -12.85371 -12.66930 -12.65809 -12.22272 -12.14203 -12.03397 -11.92404 -11.69822 -11.44517 -11.39021 -11.01483 -10.81239 -10.65367 -10.44544 -9.95874 -9.94725 -8.27443 -6.40211 -0.62516 -0.06210 0.40235 1.38362 1.39681 1.48203 2.01599 2.34542 2.57093 2.82473 2.86983 3.05241 3.24537 3.38398 3.62735 3.77415 3.89213 3.97514 3.98613 4.16036 4.16567 4.21108 4.42488 4.46165 4.48474 4.54039 4.73320 4.81786 4.84403 4.88256 4.91795 4.93792 4.98692 5.10990 5.15414 5.25178 5.25952 5.29299 5.33375 5.33861 5.35315 5.66682 5.86723 5.92666 6.05990 6.09735 6.71489 6.81216 7.28912 8.82413 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016980 B = 0.002623 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.593925 B =10670.439968 C =11509.734955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.164 3.836 3 O -0.563 6.563 4 C 0.085 3.915 5 N -1.098 6.098 6 S 2.728 3.272 7 O -0.988 6.988 8 O -0.982 6.982 9 C -0.700 4.700 10 C -0.019 4.019 11 C -0.154 4.154 12 C -0.003 4.003 13 C 0.049 3.951 14 C -0.535 4.535 15 H 0.053 0.947 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.963 3.037 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.269 1.269 22 C -0.156 4.156 23 C -0.019 4.019 24 C -0.191 4.191 25 C -0.175 4.175 26 C -0.168 4.168 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.387 0.613 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.426 0.574 34 H 0.158 0.842 35 H 0.131 0.869 36 H 0.014 0.986 37 H 0.012 0.988 38 H 0.267 0.733 39 H 0.128 0.872 40 H 0.154 0.846 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.636 18.426 17.646 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.121 3.879 3 O -0.371 6.371 4 C -0.041 4.041 5 N -0.861 5.861 6 S 2.818 3.182 7 O -0.978 6.978 8 O -0.972 6.972 9 C -0.787 4.787 10 C -0.038 4.038 11 C -0.172 4.172 12 C -0.003 4.003 13 C 0.012 3.988 14 C -0.573 4.573 15 H 0.072 0.928 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.787 3.213 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.194 1.194 22 C -0.175 4.175 23 C -0.038 4.038 24 C -0.210 4.210 25 C -0.212 4.212 26 C -0.205 4.205 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.237 0.763 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.265 0.735 34 H 0.175 0.825 35 H 0.149 0.851 36 H 0.033 0.967 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.146 0.854 40 H 0.171 0.829 41 H 0.137 0.863 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.111 0.889 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.563 18.828 17.111 25.490 hybrid contribution 0.121 -1.512 -0.856 1.742 sum 1.684 17.315 16.256 23.810 Atomic orbital electron populations 1.21805 0.91837 1.03385 1.03009 1.20731 0.95148 0.81613 0.90371 1.86541 1.28106 1.25792 1.96709 1.22193 1.00569 0.96928 0.84454 1.55133 1.53456 1.55800 1.21749 1.00686 0.72798 0.72557 0.72149 1.93538 1.74844 1.68357 1.61080 1.93530 1.31093 1.86524 1.86011 1.30778 1.06042 1.24390 1.17485 1.21041 0.96995 0.91435 0.94286 1.21308 0.97524 0.97234 1.01170 1.20816 0.93007 0.97050 0.89442 1.18257 0.96455 0.88003 0.96113 1.21265 1.35041 0.97019 1.03941 0.92834 1.25847 0.95435 0.96127 1.01461 1.70041 1.41773 1.04576 1.40052 0.85535 0.79114 0.77379 0.79280 1.19345 1.20381 1.19433 1.21297 1.01050 0.92781 1.02328 1.21016 0.94202 0.96678 0.91906 1.22998 1.05846 1.00286 0.91906 1.23075 0.92663 1.02453 1.02993 1.22911 0.98313 1.03087 0.96178 0.91397 0.91719 0.90032 0.76277 0.89139 0.89576 0.73545 0.82465 0.85139 0.96747 0.96930 0.92360 0.85403 0.82860 0.86348 0.88034 0.87708 0.88897 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.51 71.98 0.61 -1.16 16 2 C 0.16 2.04 0.91 -10.79 -0.01 2.03 16 3 O -0.56 -7.61 12.00 -148.98 -1.79 -9.39 16 4 C 0.08 1.21 5.31 86.38 0.46 1.67 16 5 N -1.10 -18.67 5.72 -187.49 -1.07 -19.74 16 6 S 2.73 67.09 5.74 -56.49 -0.32 66.77 16 7 O -0.99 -29.58 17.28 -128.00 -2.21 -31.79 16 8 O -0.98 -28.14 16.75 -128.00 -2.14 -30.29 16 9 C -0.70 -19.98 5.95 22.27 0.13 -19.85 16 10 C -0.02 -0.55 9.52 22.27 0.21 -0.33 16 11 C -0.15 -5.51 9.70 22.27 0.22 -5.29 16 12 C 0.00 -0.12 5.07 -19.87 -0.10 -0.22 16 13 C 0.05 2.46 5.10 29.10 0.15 2.61 16 14 C -0.53 -29.59 9.09 25.60 0.23 -29.35 16 15 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 16 C 0.01 0.58 5.46 84.65 0.46 1.04 16 17 N -0.93 -53.91 13.29 21.44 0.28 -53.63 16 18 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 C -0.16 -5.72 9.70 22.27 0.22 -5.51 16 23 C -0.02 -0.58 9.52 22.27 0.21 -0.37 16 24 C -0.19 -2.08 5.15 -10.79 -0.06 -2.14 16 25 C -0.18 -1.69 9.74 30.59 0.30 -1.39 16 26 C -0.17 -1.78 9.67 30.60 0.30 -1.49 16 27 H 0.07 0.83 7.29 -2.39 -0.02 0.81 16 28 H 0.06 0.80 6.60 -2.39 -0.02 0.78 16 29 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.39 3.50 7.56 -74.06 -0.56 2.94 16 31 H 0.09 1.21 7.75 -2.39 -0.02 1.19 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.43 6.22 7.08 -96.75 -0.69 5.54 16 34 H 0.16 3.71 7.61 -2.92 -0.02 3.69 16 35 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 36 H 0.01 0.76 8.09 -2.38 -0.02 0.74 16 37 H 0.01 0.67 8.09 -2.38 -0.02 0.65 16 38 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 39 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 40 H 0.15 3.93 7.62 -2.91 -0.02 3.91 16 41 H 0.12 1.21 8.11 -2.39 -0.02 1.19 16 42 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.10 0.89 6.38 -2.39 -0.02 0.88 16 44 H 0.09 1.09 7.61 -2.39 -0.02 1.07 16 45 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -70.91 384.57 -2.13 -73.04 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.23 Total: 19.38 kcal Atomic # 6 Polarization: -63.08 SS G_CDS: 3.33 Total: -59.75 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -0.79 Total: -73.37 kcal Atomic # 8 Polarization: -65.33 SS G_CDS: -6.14 Total: -71.48 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 67.09 SS G_CDS: -0.32 Total: 66.77 kcal Total: -70.91 -2.13 -73.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885027388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.203 kcal (2) G-P(sol) polarization free energy of solvation -70.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds