Wall clock time and date at job start Tue Mar 31 2020 23:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99724 * 2 1 3 5 5 N 1.46500 * 109.47177 * 305.00405 * 4 2 1 6 6 S 1.65602 * 120.00013 * 164.99610 * 5 4 2 7 7 O 1.42106 * 106.40035 * 178.53880 * 6 5 4 8 8 O 1.42103 * 106.40273 * 311.45791 * 6 5 4 9 9 C 1.76199 * 107.21794 * 64.99781 * 6 5 4 10 10 C 1.38232 * 120.00368 * 269.72358 * 9 6 5 11 11 C 1.38236 * 120.00008 * 179.76232 * 10 9 6 12 12 C 1.38231 * 119.99912 * 0.49687 * 11 10 9 13 13 C 1.50701 * 119.99969 * 179.76770 * 12 11 10 14 14 C 1.50700 * 109.46743 * 270.01496 * 13 12 11 15 15 H 1.08001 * 120.00475 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00040 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00386 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46954 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47096 * 119.99859 * 18 16 14 21 21 H 1.48497 * 109.47272 * 240.00410 * 18 16 14 22 22 C 1.38230 * 120.00144 * 359.77993 * 12 11 10 23 23 C 1.38236 * 120.00260 * 359.96038 * 22 12 11 24 24 C 1.52992 * 109.47482 * 239.99866 * 2 1 3 25 25 C 1.53002 * 117.50202 * 128.61899 * 24 2 1 26 26 C 1.52995 * 60.00289 * 252.51516 * 25 24 2 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 30 30 H 0.96696 * 113.99968 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 32 32 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 33 33 H 0.97001 * 119.99832 * 344.99528 * 5 4 2 34 34 H 1.07998 * 119.99715 * 0.02562 * 10 9 6 35 35 H 1.08000 * 119.99620 * 180.25112 * 11 10 9 36 36 H 1.09003 * 109.47044 * 30.01579 * 13 12 11 37 37 H 1.08997 * 109.47510 * 150.01819 * 13 12 11 38 38 H 0.96998 * 120.00269 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.00241 * 179.97438 * 22 12 11 40 40 H 1.07995 * 120.00164 * 179.97438 * 23 22 12 41 41 H 1.08997 * 115.55368 * 274.33497 * 24 2 1 42 42 H 1.09000 * 117.49728 * 0.02562 * 25 24 2 43 43 H 1.08999 * 117.50138 * 145.02181 * 25 24 2 44 44 H 1.09003 * 117.49858 * 252.51133 * 26 25 24 45 45 H 1.09003 * 117.50068 * 107.49036 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.4558 -0.1036 2.4424 6 16 1.5240 -0.8887 3.8989 7 8 0.9110 -0.0271 4.8482 8 8 1.0847 -2.2186 3.6588 9 6 3.2231 -1.0002 4.3522 10 6 3.9713 -2.0962 3.9653 11 6 5.3055 -2.1812 4.3168 12 6 5.8888 -1.1751 5.0640 13 6 7.3420 -1.2703 5.4517 14 6 7.4631 -1.9794 6.7759 15 1 6.5765 -2.3268 7.2856 16 6 8.7058 -2.1857 7.3364 17 7 9.7855 -1.7631 6.7156 18 14 8.8561 -3.0653 8.9775 19 1 7.5037 -3.4378 9.4651 20 1 9.6759 -4.2918 8.8084 21 1 9.5079 -2.1661 9.9632 22 6 5.1391 -0.0818 5.4559 23 6 3.8063 0.0058 5.0998 24 6 2.0400 -0.7212 -1.2491 25 6 3.0742 0.0052 -2.1116 26 6 1.6358 -0.1495 -2.6095 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 2.9703 1.4236 0.0004 31 1 1.7517 -1.7714 1.2056 32 1 3.1263 -0.6442 1.2952 33 1 1.0291 0.7652 2.3792 34 1 3.5145 -2.8840 3.3847 35 1 5.8910 -3.0356 4.0110 36 1 7.8855 -1.8286 4.6895 37 1 7.7618 -0.2680 5.5366 38 1 10.6598 -1.9079 7.1100 39 1 5.5948 0.7041 6.0400 40 1 3.2205 0.8598 5.4063 41 1 2.1267 -1.8044 -1.1642 42 1 3.3914 0.9968 -1.7888 43 1 3.8416 -0.6001 -2.5941 44 1 1.4569 -0.8566 -3.4196 45 1 1.0065 0.7405 -2.6146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885027389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:55 Heat of formation + Delta-G solvation = -87.399535 kcal Electronic energy + Delta-G solvation = -27192.481185 eV Core-core repulsion = 23302.241591 eV Total energy + Delta-G solvation = -3890.239594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.84550 -38.82634 -37.15425 -35.93664 -35.77000 -34.62372 -33.69904 -31.58236 -30.95424 -30.60202 -27.45678 -26.87266 -23.74799 -23.20199 -22.64923 -22.35738 -20.93549 -20.45458 -19.37371 -17.91050 -17.68954 -17.27373 -16.50405 -16.40796 -15.87300 -15.23743 -15.14226 -14.73900 -14.59299 -14.38788 -14.30002 -13.80457 -13.28516 -13.15390 -13.11891 -12.84149 -12.69691 -12.33696 -12.25159 -12.09768 -12.02462 -11.94295 -11.75166 -11.71857 -11.51213 -11.40332 -10.96784 -10.94797 -10.91068 -10.54983 -10.51396 -10.48774 -10.23914 -9.82270 -9.70357 -9.56986 -8.61680 -8.56212 -8.40930 -6.19325 -4.24285 0.49182 1.30322 1.76838 3.02599 3.21779 3.29923 3.34793 3.35306 3.74416 3.83403 4.08976 4.13596 4.33542 4.36494 4.45470 4.53244 4.65965 4.81730 4.91125 5.11761 5.15430 5.21117 5.21933 5.29320 5.34219 5.45581 5.49339 5.53318 5.68957 5.69831 5.75602 5.79745 5.82939 5.88745 5.89816 6.22385 6.30581 6.48310 6.80860 6.82299 6.88606 7.26774 7.27266 7.40574 7.56399 7.76028 8.11003 8.80818 9.40921 10.90739 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.002701 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.184776 B =10363.205112 C =11414.791650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.158 3.842 3 O -0.554 6.554 4 C 0.095 3.905 5 N -1.114 6.114 6 S 2.698 3.302 7 O -0.965 6.965 8 O -0.965 6.965 9 C -0.704 4.704 10 C -0.026 4.026 11 C -0.146 4.146 12 C 0.027 3.973 13 C 0.039 3.961 14 C -0.517 4.517 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.146 4.146 23 C -0.021 4.021 24 C -0.188 4.188 25 C -0.177 4.177 26 C -0.166 4.166 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.379 0.621 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.420 0.580 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.645 4.309 -17.666 23.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.116 3.884 3 O -0.361 6.361 4 C -0.032 4.032 5 N -0.874 5.874 6 S 2.791 3.209 7 O -0.956 6.956 8 O -0.955 6.955 9 C -0.794 4.794 10 C -0.045 4.045 11 C -0.165 4.165 12 C 0.026 3.974 13 C 0.002 3.998 14 C -0.555 4.555 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.165 4.165 23 C -0.041 4.041 24 C -0.207 4.207 25 C -0.213 4.213 26 C -0.203 4.203 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.228 0.772 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.255 0.745 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.132 0.868 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.734 3.947 -17.168 24.297 hybrid contribution 1.585 -0.242 0.858 1.819 sum -15.148 3.705 -16.310 22.566 Atomic orbital electron populations 1.21729 0.91767 1.02954 1.02972 1.20794 0.95202 0.81763 0.90635 1.86557 1.27213 1.25618 1.96698 1.21929 0.98266 0.98102 0.84877 1.55492 1.73659 1.34633 1.23617 1.01551 0.74117 0.73236 0.72011 1.93572 1.75284 1.67337 1.59379 1.93554 1.80057 1.36926 1.84967 1.30322 1.25262 1.05344 1.18434 1.20776 0.94014 0.94419 0.95309 1.21240 0.94580 0.99850 1.00782 1.21116 0.99052 0.90359 0.86826 1.18543 0.85091 0.98790 0.97348 1.21007 0.92822 1.37672 1.03989 0.92237 1.25007 0.95675 0.95586 0.97894 1.69955 0.98061 1.46162 1.38803 0.86426 0.78345 0.79371 0.83301 1.19561 1.20789 1.20779 1.21253 0.93661 0.99687 1.01856 1.20778 0.95101 0.95726 0.92449 1.23020 1.05364 1.00073 0.92207 1.22996 0.92710 1.02217 1.03412 1.22887 0.98106 1.03155 0.96132 0.90662 0.91610 0.91531 0.77223 0.89253 0.90959 0.74470 0.85328 0.85367 0.94724 0.94715 0.92672 0.85345 0.85249 0.86770 0.88153 0.88588 0.88835 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.46 37.16 0.31 -0.69 16 2 C 0.16 1.16 0.87 -90.63 -0.08 1.08 16 3 O -0.55 -4.25 11.93 -35.23 -0.42 -4.67 16 4 C 0.10 0.80 5.35 -4.04 -0.02 0.78 16 5 N -1.11 -10.85 5.40 -10.62 -0.06 -10.91 16 6 S 2.70 36.45 5.74 -107.50 -0.62 35.84 16 7 O -0.97 -15.52 17.28 -57.17 -0.99 -16.51 16 8 O -0.97 -15.09 16.75 -57.17 -0.96 -16.05 16 9 C -0.70 -10.81 5.95 -39.58 -0.24 -11.04 16 10 C -0.03 -0.40 9.52 -39.58 -0.38 -0.78 16 11 C -0.15 -2.63 9.70 -39.58 -0.38 -3.02 16 12 C 0.03 0.55 5.07 -104.63 -0.53 0.02 16 13 C 0.04 0.94 5.10 -29.03 -0.15 0.80 16 14 C -0.52 -13.93 9.09 -34.44 -0.31 -14.24 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.37 13.29 55.43 0.74 -24.64 16 18 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C -0.15 -2.67 9.70 -39.58 -0.38 -3.06 16 23 C -0.02 -0.34 9.52 -39.58 -0.38 -0.72 16 24 C -0.19 -1.21 5.15 -90.62 -0.47 -1.68 16 25 C -0.18 -1.06 9.74 -26.73 -0.26 -1.32 16 26 C -0.17 -1.02 9.67 -26.73 -0.26 -1.28 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.46 7.29 -51.93 -0.38 0.08 16 29 H 0.07 0.50 6.89 -51.93 -0.36 0.15 16 30 H 0.38 2.09 7.57 45.56 0.34 2.44 16 31 H 0.09 0.73 7.75 -51.93 -0.40 0.33 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.42 3.60 7.58 -34.47 -0.26 3.34 16 34 H 0.13 1.71 7.61 -52.49 -0.40 1.31 16 35 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.13 2.25 8.06 -52.48 -0.42 1.82 16 40 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 41 H 0.11 0.69 8.11 -51.93 -0.42 0.27 16 42 H 0.10 0.56 6.38 -51.93 -0.33 0.23 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.64 7.61 -51.93 -0.40 0.25 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -33.15 384.91 -11.06 -44.21 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.92 Total: 4.52 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: -3.62 Total: -33.61 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.68 Total: -35.54 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -2.37 Total: -37.23 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 36.45 SS G_CDS: -0.62 Total: 35.84 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.15 -11.06 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885027389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.191 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds