Wall clock time and date at job start Tue Mar 31 2020 23:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99724 * 2 1 3 5 5 N 1.46500 * 109.47177 * 305.00405 * 4 2 1 6 6 S 1.65602 * 120.00013 * 164.99610 * 5 4 2 7 7 O 1.42106 * 106.40035 * 178.53880 * 6 5 4 8 8 O 1.42103 * 106.40273 * 311.45791 * 6 5 4 9 9 C 1.76199 * 107.21794 * 64.99781 * 6 5 4 10 10 C 1.38232 * 120.00368 * 269.72358 * 9 6 5 11 11 C 1.38236 * 120.00008 * 179.76232 * 10 9 6 12 12 C 1.38231 * 119.99912 * 0.49687 * 11 10 9 13 13 C 1.50701 * 119.99969 * 179.76770 * 12 11 10 14 14 C 1.50700 * 109.46743 * 270.01496 * 13 12 11 15 15 H 1.08001 * 120.00475 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00040 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00386 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46954 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47096 * 119.99859 * 18 16 14 21 21 H 1.48497 * 109.47272 * 240.00410 * 18 16 14 22 22 C 1.38230 * 120.00144 * 359.77993 * 12 11 10 23 23 C 1.38236 * 120.00260 * 359.96038 * 22 12 11 24 24 C 1.52992 * 109.47482 * 239.99866 * 2 1 3 25 25 C 1.53002 * 117.50202 * 128.61899 * 24 2 1 26 26 C 1.52995 * 60.00289 * 252.51516 * 25 24 2 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 30 30 H 0.96696 * 113.99968 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 32 32 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 33 33 H 0.97001 * 119.99832 * 344.99528 * 5 4 2 34 34 H 1.07998 * 119.99715 * 0.02562 * 10 9 6 35 35 H 1.08000 * 119.99620 * 180.25112 * 11 10 9 36 36 H 1.09003 * 109.47044 * 30.01579 * 13 12 11 37 37 H 1.08997 * 109.47510 * 150.01819 * 13 12 11 38 38 H 0.96998 * 120.00269 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.00241 * 179.97438 * 22 12 11 40 40 H 1.07995 * 120.00164 * 179.97438 * 23 22 12 41 41 H 1.08997 * 115.55368 * 274.33497 * 24 2 1 42 42 H 1.09000 * 117.49728 * 0.02562 * 25 24 2 43 43 H 1.08999 * 117.50138 * 145.02181 * 25 24 2 44 44 H 1.09003 * 117.49858 * 252.51133 * 26 25 24 45 45 H 1.09003 * 117.50068 * 107.49036 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.4558 -0.1036 2.4424 6 16 1.5240 -0.8887 3.8989 7 8 0.9110 -0.0271 4.8482 8 8 1.0847 -2.2186 3.6588 9 6 3.2231 -1.0002 4.3522 10 6 3.9713 -2.0962 3.9653 11 6 5.3055 -2.1812 4.3168 12 6 5.8888 -1.1751 5.0640 13 6 7.3420 -1.2703 5.4517 14 6 7.4631 -1.9794 6.7759 15 1 6.5765 -2.3268 7.2856 16 6 8.7058 -2.1857 7.3364 17 7 9.7855 -1.7631 6.7156 18 14 8.8561 -3.0653 8.9775 19 1 7.5037 -3.4378 9.4651 20 1 9.6759 -4.2918 8.8084 21 1 9.5079 -2.1661 9.9632 22 6 5.1391 -0.0818 5.4559 23 6 3.8063 0.0058 5.0998 24 6 2.0400 -0.7212 -1.2491 25 6 3.0742 0.0052 -2.1116 26 6 1.6358 -0.1495 -2.6095 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 2.9703 1.4236 0.0004 31 1 1.7517 -1.7714 1.2056 32 1 3.1263 -0.6442 1.2952 33 1 1.0291 0.7652 2.3792 34 1 3.5145 -2.8840 3.3847 35 1 5.8910 -3.0356 4.0110 36 1 7.8855 -1.8286 4.6895 37 1 7.7618 -0.2680 5.5366 38 1 10.6598 -1.9079 7.1100 39 1 5.5948 0.7041 6.0400 40 1 3.2205 0.8598 5.4063 41 1 2.1267 -1.8044 -1.1642 42 1 3.3914 0.9968 -1.7888 43 1 3.8416 -0.6001 -2.5941 44 1 1.4569 -0.8566 -3.4196 45 1 1.0065 0.7405 -2.6146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885027389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:54 Heat of formation + Delta-G solvation = -110.407709 kcal Electronic energy + Delta-G solvation = -27193.478894 eV Core-core repulsion = 23302.241591 eV Total energy + Delta-G solvation = -3891.237303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.40316 -40.22478 -38.34152 -36.97403 -36.53032 -35.60274 -35.28537 -33.31949 -31.95820 -31.57928 -29.24755 -27.51734 -25.59461 -23.85246 -23.64789 -23.10145 -22.47388 -21.08113 -20.38181 -19.00229 -18.66468 -18.54608 -17.99733 -17.24689 -16.88512 -16.70654 -16.22639 -15.98869 -15.67324 -15.36657 -15.21761 -15.04146 -14.64423 -14.44735 -13.98368 -13.87687 -13.70317 -13.41484 -13.38496 -13.25472 -13.22176 -13.15808 -13.05144 -12.86823 -12.69238 -12.65277 -12.22687 -12.14784 -12.03860 -11.93830 -11.65708 -11.44875 -11.38297 -10.99463 -10.82106 -10.66337 -10.46506 -9.96012 -9.94748 -8.27891 -6.40395 -0.62458 -0.06291 0.40074 1.36655 1.38391 1.50832 2.00715 2.34286 2.56659 2.82462 2.86918 3.04893 3.27742 3.33621 3.63394 3.76998 3.88986 3.98202 3.99800 4.14642 4.16193 4.26743 4.39065 4.45668 4.48227 4.52592 4.73983 4.81883 4.84603 4.88507 4.91582 4.94748 4.99043 5.10964 5.15824 5.25032 5.26118 5.29345 5.33401 5.33751 5.36122 5.66819 5.86573 5.92524 6.06228 6.09608 6.71716 6.80351 7.28830 8.82339 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.002701 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.184776 B =10363.205112 C =11414.791650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.164 3.836 3 O -0.564 6.564 4 C 0.086 3.914 5 N -1.098 6.098 6 S 2.727 3.273 7 O -0.988 6.988 8 O -0.981 6.981 9 C -0.700 4.700 10 C -0.019 4.019 11 C -0.153 4.153 12 C -0.003 4.003 13 C 0.048 3.952 14 C -0.533 4.533 15 H 0.053 0.947 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.963 3.037 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.156 4.156 23 C -0.019 4.019 24 C -0.190 4.190 25 C -0.178 4.178 26 C -0.166 4.166 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.387 0.613 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.428 0.572 34 H 0.158 0.842 35 H 0.131 0.869 36 H 0.015 0.985 37 H 0.013 0.987 38 H 0.267 0.733 39 H 0.128 0.872 40 H 0.153 0.847 41 H 0.120 0.880 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.334 3.948 -18.266 25.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.121 3.879 3 O -0.372 6.372 4 C -0.041 4.041 5 N -0.861 5.861 6 S 2.817 3.183 7 O -0.978 6.978 8 O -0.970 6.970 9 C -0.787 4.787 10 C -0.038 4.038 11 C -0.172 4.172 12 C -0.003 4.003 13 C 0.011 3.989 14 C -0.570 4.570 15 H 0.071 0.929 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.788 3.212 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.201 1.201 22 C -0.175 4.175 23 C -0.038 4.038 24 C -0.209 4.209 25 C -0.214 4.214 26 C -0.203 4.203 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.238 0.762 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.266 0.734 34 H 0.176 0.824 35 H 0.149 0.851 36 H 0.033 0.967 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.146 0.854 40 H 0.170 0.830 41 H 0.138 0.862 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.402 3.593 -17.763 25.828 hybrid contribution 2.014 -0.081 0.924 2.217 sum -16.389 3.512 -16.839 23.759 Atomic orbital electron populations 1.21795 0.91870 1.03368 1.02938 1.20730 0.95141 0.81602 0.90397 1.86543 1.28165 1.25830 1.96687 1.22190 0.98831 0.98562 0.84500 1.55145 1.73417 1.34939 1.22644 1.00723 0.72774 0.72638 0.72162 1.93541 1.75368 1.67794 1.61089 1.93536 1.79868 1.38238 1.85406 1.30778 1.26329 1.04563 1.17022 1.21046 0.92896 0.95108 0.94719 1.21307 0.95821 0.99397 1.00705 1.20811 0.97213 0.92607 0.89664 1.18266 0.87907 0.96757 0.95957 1.21317 0.92726 1.37788 1.05204 0.92883 1.25851 0.95362 0.96293 1.01409 1.70057 0.98589 1.47327 1.40476 0.85421 0.78367 0.78390 0.79047 1.19249 1.20003 1.20091 1.21295 0.94711 0.99236 1.02226 1.21007 0.94204 0.96697 0.91910 1.23008 1.05678 1.00328 0.91878 1.23064 0.92757 1.02411 1.03201 1.22913 0.98125 1.03112 0.96192 0.90065 0.91390 0.91883 0.76218 0.88621 0.90113 0.73424 0.82441 0.85118 0.96706 0.96907 0.92374 0.85421 0.82952 0.86184 0.87874 0.88198 0.88104 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.46 71.98 0.61 -1.19 16 2 C 0.16 2.03 0.87 -10.80 -0.01 2.02 16 3 O -0.56 -7.50 11.93 -148.98 -1.78 -9.28 16 4 C 0.09 1.21 5.35 86.38 0.46 1.67 16 5 N -1.10 -18.54 5.40 -187.50 -1.01 -19.55 16 6 S 2.73 66.86 5.74 -56.49 -0.32 66.53 16 7 O -0.99 -29.48 17.28 -128.00 -2.21 -31.69 16 8 O -0.98 -27.99 16.75 -128.00 -2.14 -30.14 16 9 C -0.70 -20.01 5.95 22.27 0.13 -19.88 16 10 C -0.02 -0.55 9.52 22.27 0.21 -0.34 16 11 C -0.15 -5.50 9.70 22.27 0.22 -5.29 16 12 C 0.00 -0.11 5.07 -19.87 -0.10 -0.21 16 13 C 0.05 2.43 5.10 29.10 0.15 2.58 16 14 C -0.53 -29.46 9.09 25.60 0.23 -29.22 16 15 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 16 C 0.01 0.54 5.46 84.65 0.46 1.01 16 17 N -0.93 -53.82 13.29 21.45 0.28 -53.54 16 18 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 C -0.16 -5.74 9.70 22.27 0.22 -5.52 16 23 C -0.02 -0.59 9.52 22.27 0.21 -0.38 16 24 C -0.19 -2.05 5.15 -10.79 -0.06 -2.11 16 25 C -0.18 -1.82 9.74 30.59 0.30 -1.52 16 26 C -0.17 -1.75 9.67 30.59 0.30 -1.46 16 27 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.82 7.29 -2.39 -0.02 0.81 16 29 H 0.06 0.83 6.89 -2.38 -0.02 0.81 16 30 H 0.39 3.51 7.57 -74.06 -0.56 2.95 16 31 H 0.10 1.28 7.75 -2.39 -0.02 1.26 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.43 6.25 7.58 -96.74 -0.73 5.51 16 34 H 0.16 3.71 7.61 -2.91 -0.02 3.69 16 35 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 36 H 0.01 0.78 8.09 -2.39 -0.02 0.76 16 37 H 0.01 0.68 8.09 -2.39 -0.02 0.66 16 38 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 39 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 40 H 0.15 3.96 7.62 -2.91 -0.02 3.93 16 41 H 0.12 1.17 8.11 -2.39 -0.02 1.15 16 42 H 0.10 0.98 6.38 -2.39 -0.02 0.97 16 43 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.09 1.08 7.61 -2.39 -0.02 1.06 16 Total: -1.00 -70.70 384.91 -2.11 -72.81 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -0.28 Total: 19.24 kcal Atomic # 6 Polarization: -63.17 SS G_CDS: 3.33 Total: -59.83 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -0.73 Total: -73.09 kcal Atomic # 8 Polarization: -64.97 SS G_CDS: -6.13 Total: -71.11 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 66.86 SS G_CDS: -0.32 Total: 66.53 kcal Total: -70.70 -2.11 -72.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885027389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.600 kcal (2) G-P(sol) polarization free energy of solvation -70.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds