Wall clock time and date at job start Tue Mar 31 2020 23:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.51305 * 2 1 4 4 O 1.42963 * 109.51165 * 120.09991 * 2 1 3 5 5 C 1.42961 * 114.16791 * 182.55572 * 4 2 1 6 6 C 1.53293 * 109.22185 * 297.41838 * 5 4 2 7 7 N 1.47153 * 108.38608 * 52.30372 * 6 5 4 8 8 S 1.65597 * 120.98182 * 129.43545 * 7 6 5 9 9 O 1.42100 * 106.40610 * 343.93959 * 8 7 6 10 10 O 1.42102 * 106.40297 * 211.01641 * 8 7 6 11 11 C 1.76203 * 107.21573 * 97.48163 * 8 7 6 12 12 C 1.38235 * 120.00115 * 89.99814 * 11 8 7 13 13 C 1.38235 * 120.00056 * 180.02562 * 12 11 8 14 14 C 1.38234 * 119.99754 * 359.94896 * 13 12 11 15 15 C 1.50701 * 119.99601 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47049 * 90.01002 * 15 14 13 17 17 H 1.08005 * 120.00237 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00333 * 179.72764 * 16 15 14 19 19 N 1.31512 * 119.99660 * 0.26491 * 18 16 15 20 20 Si 1.86793 * 120.00186 * 180.27357 * 18 16 15 21 21 H 1.48497 * 109.47651 * 59.99240 * 20 18 16 22 22 H 1.48506 * 109.47039 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47251 * 299.99232 * 20 18 16 24 24 C 1.38231 * 120.00294 * 0.28250 * 14 13 12 25 25 C 1.38233 * 119.99699 * 359.51322 * 24 14 13 26 26 C 1.47153 * 118.03512 * 309.71720 * 7 6 5 27 27 H 1.09003 * 109.67897 * 290.55933 * 26 7 6 28 28 C 1.52994 * 109.68268 * 170.00539 * 26 7 6 29 29 H 1.09002 * 109.47600 * 299.90320 * 1 2 3 30 30 H 1.09000 * 109.46849 * 59.89783 * 1 2 3 31 31 H 1.08995 * 109.47292 * 179.89746 * 1 2 3 32 32 H 1.09009 * 109.50927 * 177.49654 * 5 4 2 33 33 H 1.08999 * 109.55193 * 57.37101 * 5 4 2 34 34 H 1.08995 * 109.68207 * 292.58042 * 6 5 4 35 35 H 1.08999 * 109.67894 * 172.02697 * 6 5 4 36 36 H 1.08003 * 119.99868 * 359.97438 * 12 11 8 37 37 H 1.07994 * 119.99984 * 179.97438 * 13 12 11 38 38 H 1.08994 * 109.47798 * 330.00601 * 15 14 13 39 39 H 1.09007 * 109.47135 * 210.00467 * 15 14 13 40 40 H 0.97004 * 120.00276 * 180.02562 * 19 18 16 41 41 H 1.08003 * 120.00236 * 179.72292 * 24 14 13 42 42 H 1.08005 * 120.00178 * 180.25436 * 25 24 14 43 43 H 1.09001 * 109.47182 * 53.73976 * 28 26 7 44 44 H 1.08997 * 109.47333 * 173.74058 * 28 26 7 45 45 H 1.09002 * 109.47160 * 293.74014 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 8 2.0075 -0.6758 1.1658 5 6 3.4311 -0.6839 1.2958 6 6 4.0416 -1.4440 0.1128 7 7 3.5023 -0.8750 -1.1325 8 16 4.5079 -0.4164 -2.3657 9 8 5.8127 -0.3320 -1.8093 10 8 3.8701 0.6720 -3.0198 11 6 4.5467 -1.7410 -3.5270 12 6 3.6316 -1.7796 -4.5623 13 6 3.6618 -2.8191 -5.4730 14 6 4.6078 -3.8194 -5.3491 15 6 4.6410 -4.9523 -6.3423 16 6 5.5453 -4.5867 -7.4911 17 1 6.0456 -3.6296 -7.5012 18 6 5.7381 -5.4763 -8.5268 19 7 5.1286 -6.6416 -8.5147 20 14 6.8649 -5.0262 -9.9470 21 1 8.2344 -4.7736 -9.4315 22 1 6.9023 -6.1450 -10.9229 23 1 6.3542 -3.8026 -10.6156 24 6 5.5199 -3.7833 -4.3110 25 6 5.4924 -2.7416 -3.4028 26 6 2.0435 -0.7198 -1.2472 27 1 1.5746 -1.7011 -1.3204 28 6 1.7093 0.1059 -2.4910 29 1 -0.3634 0.5123 0.8908 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3633 -1.0276 -0.0018 32 1 3.7089 -1.1768 2.2276 33 1 3.8028 0.3408 1.3010 34 1 3.7773 -2.4994 0.1788 35 1 5.1260 -1.3351 0.1267 36 1 2.8925 -0.9981 -4.6591 37 1 2.9465 -2.8495 -6.2816 38 1 3.6343 -5.1368 -6.7169 39 1 5.0180 -5.8516 -5.8552 40 1 5.2645 -7.2676 -9.2432 41 1 6.2562 -4.5671 -4.2116 42 1 6.2077 -2.7111 -2.5941 43 1 2.1839 -0.3431 -3.3635 44 1 0.6290 0.1253 -2.6348 45 1 2.0769 1.1238 -2.3610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885061232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:05 Heat of formation + Delta-G solvation = -84.222187 kcal Electronic energy + Delta-G solvation = -28116.993705 eV Core-core repulsion = 24226.891892 eV Total energy + Delta-G solvation = -3890.101814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.92050 -38.85456 -37.53894 -35.91699 -35.37507 -33.87127 -33.70086 -31.60150 -30.65538 -29.31776 -28.29450 -27.45940 -24.54984 -23.73883 -23.06922 -22.40166 -21.19048 -20.89249 -19.00683 -17.82834 -17.45043 -16.86928 -16.46626 -16.34816 -15.58773 -15.27535 -15.14877 -14.95522 -14.71121 -14.42114 -14.40802 -13.78635 -13.46691 -13.33574 -13.07349 -12.87215 -12.69521 -12.41104 -12.32857 -12.25915 -12.04056 -11.87977 -11.78413 -11.71390 -11.51164 -11.41872 -11.06505 -10.97662 -10.89302 -10.67383 -10.49528 -10.47253 -10.21142 -9.76714 -9.67132 -9.04700 -8.62826 -8.55514 -8.40444 -6.18926 -4.24206 0.38111 1.29323 1.75448 2.83968 3.24625 3.28891 3.32252 3.41512 3.71925 4.04170 4.19409 4.34386 4.38558 4.41442 4.70084 4.77228 4.83901 4.92968 5.04264 5.09111 5.15126 5.18405 5.21048 5.24681 5.40940 5.42117 5.52723 5.63198 5.65664 5.70736 5.77408 5.81774 5.87457 5.95070 6.20991 6.24879 6.30543 6.33049 6.49306 6.80573 6.86286 6.87538 7.26327 7.39908 7.56188 7.75806 8.11021 8.80249 9.40786 10.91080 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022200 B = 0.002786 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.951297 B =10048.257345 C =10259.497357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.081 3.919 3 H 0.065 0.935 4 O -0.377 6.377 5 C 0.053 3.947 6 C 0.081 3.919 7 N -1.000 6.000 8 S 2.693 3.307 9 O -0.966 6.966 10 O -0.958 6.958 11 C -0.703 4.703 12 C -0.028 4.028 13 C -0.144 4.144 14 C 0.027 3.973 15 C 0.040 3.960 16 C -0.519 4.519 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C -0.145 4.145 25 C -0.023 4.023 26 C 0.124 3.876 27 H 0.084 0.916 28 C -0.186 4.186 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.265 0.735 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.832 11.683 18.855 23.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.021 3.979 3 H 0.083 0.917 4 O -0.295 6.295 5 C -0.026 4.026 6 C -0.045 4.045 7 N -0.838 5.838 8 S 2.789 3.211 9 O -0.956 6.956 10 O -0.948 6.948 11 C -0.792 4.792 12 C -0.048 4.048 13 C -0.163 4.163 14 C 0.026 3.974 15 C 0.003 3.997 16 C -0.557 4.557 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.727 3.273 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.163 4.163 25 C -0.043 4.043 26 C 0.018 3.982 27 H 0.102 0.898 28 C -0.244 4.244 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.510 12.219 18.830 23.670 hybrid contribution 0.750 -0.597 -1.397 1.694 sum -6.761 11.622 17.433 22.016 Atomic orbital electron populations 1.21802 0.92179 1.03362 1.02963 1.22426 0.95504 0.95295 0.84626 0.91734 1.87944 1.20824 1.77607 1.43143 1.22906 0.81330 1.00210 0.98115 1.22194 1.00169 0.98681 0.83441 1.57952 1.16722 1.79974 1.29155 1.01814 0.72195 0.74416 0.72671 1.93519 1.37191 1.86691 1.78205 1.93647 1.75058 1.50852 1.75250 1.30349 1.09376 1.21391 1.18125 1.20880 0.94991 0.96766 0.92125 1.21249 1.00655 0.94787 0.99623 1.21123 0.89104 0.95219 0.91905 1.18534 0.98743 0.90575 0.91841 1.20931 1.27906 1.02583 1.04296 0.92344 1.25002 0.95957 0.94829 0.98314 1.69935 1.42578 1.07561 1.32881 0.86532 0.81114 0.78079 0.81620 1.20036 1.21078 1.20016 1.21251 1.00295 0.99186 0.95610 1.20751 0.94245 0.91579 0.97684 1.21672 0.79266 1.00555 0.96667 0.89774 1.22844 1.02696 1.02788 0.96027 0.91503 0.90383 0.91467 0.87511 0.92595 0.90280 0.87592 0.84989 0.85289 0.94697 0.94708 0.92543 0.85302 0.85393 0.90539 0.90929 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.38 37.16 0.35 -0.66 16 2 C 0.08 0.73 2.83 -26.79 -0.08 0.66 16 3 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 4 O -0.38 -3.75 10.39 -35.23 -0.37 -4.11 16 5 C 0.05 0.44 6.98 37.31 0.26 0.70 16 6 C 0.08 0.75 6.73 -3.53 -0.02 0.73 16 7 N -1.00 -11.22 3.35 -106.26 -0.36 -11.58 16 8 S 2.69 37.90 5.31 -107.50 -0.57 37.33 16 9 O -0.97 -15.47 15.75 -57.17 -0.90 -16.37 16 10 O -0.96 -14.49 12.55 -57.17 -0.72 -15.20 16 11 C -0.70 -11.17 5.97 -39.58 -0.24 -11.40 16 12 C -0.03 -0.46 8.94 -39.58 -0.35 -0.81 16 13 C -0.14 -2.66 9.70 -39.58 -0.38 -3.05 16 14 C 0.03 0.56 5.07 -104.63 -0.53 0.02 16 15 C 0.04 0.97 5.10 -29.04 -0.15 0.82 16 16 C -0.52 -14.07 9.09 -34.44 -0.31 -14.38 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 20 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.14 -2.69 9.70 -39.59 -0.38 -3.08 16 25 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 26 C 0.12 1.25 3.13 -67.64 -0.21 1.03 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 C -0.19 -1.88 7.20 37.15 0.27 -1.61 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.44 6.86 -51.93 -0.36 0.08 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.11 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.11 0.96 6.81 -51.93 -0.35 0.60 16 36 H 0.13 1.81 5.48 -52.48 -0.29 1.52 16 37 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 38 H 0.03 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.03 0.88 8.08 -51.92 -0.42 0.47 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 42 H 0.13 1.81 7.62 -52.48 -0.40 1.41 16 43 H 0.08 0.87 3.19 -51.93 -0.17 0.71 16 44 H 0.07 0.55 7.03 -51.93 -0.37 0.19 16 45 H 0.09 1.05 6.58 -51.93 -0.34 0.70 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -32.14 365.16 -10.40 -42.54 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.45 Total: 0.78 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: -2.26 Total: -30.20 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.38 Total: -36.32 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -1.98 Total: -35.69 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 37.90 SS G_CDS: -0.57 Total: 37.33 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.14 -10.40 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885061232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.682 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds