Wall clock time and date at job start Tue Mar 31 2020 23:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.51305 * 2 1 4 4 O 1.42963 * 109.51165 * 120.09991 * 2 1 3 5 5 C 1.42961 * 114.16791 * 182.55572 * 4 2 1 6 6 C 1.53293 * 109.22185 * 297.41838 * 5 4 2 7 7 N 1.47153 * 108.38608 * 52.30372 * 6 5 4 8 8 S 1.65597 * 120.98182 * 129.43545 * 7 6 5 9 9 O 1.42100 * 106.40610 * 343.93959 * 8 7 6 10 10 O 1.42102 * 106.40297 * 211.01641 * 8 7 6 11 11 C 1.76203 * 107.21573 * 97.48163 * 8 7 6 12 12 C 1.38235 * 120.00115 * 89.99814 * 11 8 7 13 13 C 1.38235 * 120.00056 * 180.02562 * 12 11 8 14 14 C 1.38234 * 119.99754 * 359.94896 * 13 12 11 15 15 C 1.50701 * 119.99601 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47049 * 90.01002 * 15 14 13 17 17 H 1.08005 * 120.00237 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00333 * 179.72764 * 16 15 14 19 19 N 1.31512 * 119.99660 * 0.26491 * 18 16 15 20 20 Si 1.86793 * 120.00186 * 180.27357 * 18 16 15 21 21 H 1.48497 * 109.47651 * 59.99240 * 20 18 16 22 22 H 1.48506 * 109.47039 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47251 * 299.99232 * 20 18 16 24 24 C 1.38231 * 120.00294 * 0.28250 * 14 13 12 25 25 C 1.38233 * 119.99699 * 359.51322 * 24 14 13 26 26 C 1.47153 * 118.03512 * 309.71720 * 7 6 5 27 27 H 1.09003 * 109.67897 * 290.55933 * 26 7 6 28 28 C 1.52994 * 109.68268 * 170.00539 * 26 7 6 29 29 H 1.09002 * 109.47600 * 299.90320 * 1 2 3 30 30 H 1.09000 * 109.46849 * 59.89783 * 1 2 3 31 31 H 1.08995 * 109.47292 * 179.89746 * 1 2 3 32 32 H 1.09009 * 109.50927 * 177.49654 * 5 4 2 33 33 H 1.08999 * 109.55193 * 57.37101 * 5 4 2 34 34 H 1.08995 * 109.68207 * 292.58042 * 6 5 4 35 35 H 1.08999 * 109.67894 * 172.02697 * 6 5 4 36 36 H 1.08003 * 119.99868 * 359.97438 * 12 11 8 37 37 H 1.07994 * 119.99984 * 179.97438 * 13 12 11 38 38 H 1.08994 * 109.47798 * 330.00601 * 15 14 13 39 39 H 1.09007 * 109.47135 * 210.00467 * 15 14 13 40 40 H 0.97004 * 120.00276 * 180.02562 * 19 18 16 41 41 H 1.08003 * 120.00236 * 179.72292 * 24 14 13 42 42 H 1.08005 * 120.00178 * 180.25436 * 25 24 14 43 43 H 1.09001 * 109.47182 * 53.73976 * 28 26 7 44 44 H 1.08997 * 109.47333 * 173.74058 * 28 26 7 45 45 H 1.09002 * 109.47160 * 293.74014 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 8 2.0075 -0.6758 1.1658 5 6 3.4311 -0.6839 1.2958 6 6 4.0416 -1.4440 0.1128 7 7 3.5023 -0.8750 -1.1325 8 16 4.5079 -0.4164 -2.3657 9 8 5.8127 -0.3320 -1.8093 10 8 3.8701 0.6720 -3.0198 11 6 4.5467 -1.7410 -3.5270 12 6 3.6316 -1.7796 -4.5623 13 6 3.6618 -2.8191 -5.4730 14 6 4.6078 -3.8194 -5.3491 15 6 4.6410 -4.9523 -6.3423 16 6 5.5453 -4.5867 -7.4911 17 1 6.0456 -3.6296 -7.5012 18 6 5.7381 -5.4763 -8.5268 19 7 5.1286 -6.6416 -8.5147 20 14 6.8649 -5.0262 -9.9470 21 1 8.2344 -4.7736 -9.4315 22 1 6.9023 -6.1450 -10.9229 23 1 6.3542 -3.8026 -10.6156 24 6 5.5199 -3.7833 -4.3110 25 6 5.4924 -2.7416 -3.4028 26 6 2.0435 -0.7198 -1.2472 27 1 1.5746 -1.7011 -1.3204 28 6 1.7093 0.1059 -2.4910 29 1 -0.3634 0.5123 0.8908 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3633 -1.0276 -0.0018 32 1 3.7089 -1.1768 2.2276 33 1 3.8028 0.3408 1.3010 34 1 3.7773 -2.4994 0.1788 35 1 5.1260 -1.3351 0.1267 36 1 2.8925 -0.9981 -4.6591 37 1 2.9465 -2.8495 -6.2816 38 1 3.6343 -5.1368 -6.7169 39 1 5.0180 -5.8516 -5.8552 40 1 5.2645 -7.2676 -9.2432 41 1 6.2562 -4.5671 -4.2116 42 1 6.2077 -2.7111 -2.5941 43 1 2.1839 -0.3431 -3.3635 44 1 0.6290 0.1253 -2.6348 45 1 2.0769 1.1238 -2.3610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885061232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:04 Heat of formation + Delta-G solvation = -104.564388 kcal Electronic energy + Delta-G solvation = -28117.875810 eV Core-core repulsion = 24226.891892 eV Total energy + Delta-G solvation = -3890.983918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.65183 -40.27988 -38.68128 -37.07560 -36.20769 -35.62011 -34.56598 -33.35835 -32.03255 -29.99617 -29.26379 -29.05413 -25.63678 -25.25099 -23.78392 -23.77885 -22.47292 -21.93249 -20.13027 -18.99507 -18.57982 -18.33915 -17.75728 -17.18556 -16.88897 -16.47380 -16.30425 -16.07681 -15.69065 -15.62564 -15.60668 -15.07032 -14.63889 -14.61230 -14.19771 -13.97708 -13.85423 -13.47329 -13.42746 -13.41003 -13.34742 -13.20423 -12.94378 -12.72871 -12.68944 -12.65953 -12.48932 -12.15992 -12.13916 -11.99207 -11.79761 -11.71622 -11.42629 -11.30952 -11.04342 -10.66560 -10.03953 -10.00343 -9.79019 -8.28549 -6.41648 -0.74337 -0.09874 0.35468 1.37615 1.39169 1.47719 1.81095 2.33358 2.53272 2.72769 2.79224 3.04029 3.16833 3.54554 3.63840 3.77174 3.90193 4.01704 4.07779 4.12031 4.17173 4.25852 4.40166 4.43323 4.44608 4.52966 4.62505 4.69764 4.77434 4.83814 4.85693 4.90026 5.00570 5.03654 5.05759 5.12259 5.21002 5.23635 5.29483 5.33086 5.51807 5.52768 5.65122 5.82940 5.88882 6.07600 6.20859 6.69823 7.27502 8.81384 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022200 B = 0.002786 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.951297 B =10048.257345 C =10259.497357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.079 3.921 3 H 0.064 0.936 4 O -0.388 6.388 5 C 0.051 3.949 6 C 0.072 3.928 7 N -0.994 5.994 8 S 2.713 3.287 9 O -0.983 6.983 10 O -0.966 6.966 11 C -0.702 4.702 12 C -0.023 4.023 13 C -0.154 4.154 14 C -0.003 4.003 15 C 0.049 3.951 16 C -0.536 4.536 17 H 0.054 0.946 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.964 3.036 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.154 4.154 25 C -0.021 4.021 26 C 0.121 3.879 27 H 0.090 0.910 28 C -0.189 4.189 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.132 0.868 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.160 0.840 37 H 0.132 0.868 38 H 0.014 0.986 39 H 0.013 0.987 40 H 0.268 0.732 41 H 0.130 0.870 42 H 0.153 0.847 43 H 0.062 0.938 44 H 0.099 0.901 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.144 13.380 20.148 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.020 3.980 3 H 0.082 0.918 4 O -0.307 6.307 5 C -0.028 4.028 6 C -0.053 4.053 7 N -0.835 5.835 8 S 2.806 3.194 9 O -0.973 6.973 10 O -0.957 6.957 11 C -0.789 4.789 12 C -0.041 4.041 13 C -0.172 4.172 14 C -0.004 4.004 15 C 0.012 3.988 16 C -0.574 4.574 17 H 0.072 0.928 18 C -0.189 4.189 19 N -0.564 5.564 20 Si 0.788 3.212 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.193 1.193 24 C -0.173 4.173 25 C -0.041 4.041 26 C 0.015 3.985 27 H 0.108 0.892 28 C -0.247 4.247 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.150 0.850 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.127 0.873 36 H 0.177 0.823 37 H 0.150 0.850 38 H 0.032 0.968 39 H 0.031 0.969 40 H 0.077 0.923 41 H 0.148 0.852 42 H 0.171 0.829 43 H 0.081 0.919 44 H 0.117 0.883 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.816 13.903 20.108 25.666 hybrid contribution 0.783 -1.058 -1.648 2.109 sum -7.033 12.845 18.460 23.564 Atomic orbital electron populations 1.21832 0.90646 1.03676 1.03952 1.22523 0.96722 0.94961 0.83827 0.91772 1.87941 1.21660 1.77723 1.43400 1.23070 0.80572 1.00534 0.98582 1.22455 1.00525 0.99423 0.82866 1.57790 1.17118 1.79889 1.28668 1.01310 0.71939 0.73679 0.72441 1.93494 1.38718 1.86747 1.78378 1.93647 1.75099 1.51034 1.75893 1.30869 1.08287 1.21382 1.18334 1.21156 0.95380 0.96433 0.91174 1.21325 1.00369 0.95067 1.00480 1.20831 0.91644 0.95276 0.92599 1.18255 0.96855 0.91459 0.92215 1.21263 1.28268 1.02424 1.05441 0.92807 1.25864 0.97376 0.94682 1.00952 1.70046 1.43957 1.08551 1.33864 0.85515 0.79180 0.78078 0.78417 1.19408 1.20329 1.19298 1.21307 1.00081 1.00199 0.95736 1.21003 0.94686 0.90786 0.97583 1.21860 0.78268 1.01066 0.97306 0.89231 1.22851 1.04417 1.02020 0.95365 0.91012 0.88957 0.91471 0.85047 0.92380 0.89310 0.87282 0.82301 0.85041 0.96767 0.96892 0.92325 0.85213 0.82917 0.91901 0.88284 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.38 71.98 0.68 -0.94 16 2 C 0.08 1.24 2.83 30.55 0.09 1.32 16 3 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 4 O -0.39 -6.76 10.39 -148.98 -1.55 -8.30 16 5 C 0.05 0.71 6.98 72.08 0.50 1.21 16 6 C 0.07 1.18 6.73 86.35 0.58 1.76 16 7 N -0.99 -20.14 3.35 -490.11 -1.64 -21.78 16 8 S 2.71 71.15 5.31 -56.49 -0.30 70.85 16 9 O -0.98 -29.62 15.75 -128.00 -2.02 -31.63 16 10 O -0.97 -27.37 12.55 -128.00 -1.61 -28.98 16 11 C -0.70 -21.29 5.97 22.27 0.13 -21.16 16 12 C -0.02 -0.71 8.94 22.27 0.20 -0.51 16 13 C -0.15 -5.72 9.70 22.27 0.22 -5.51 16 14 C 0.00 -0.13 5.07 -19.87 -0.10 -0.24 16 15 C 0.05 2.52 5.10 29.10 0.15 2.67 16 16 C -0.54 -29.91 9.09 25.60 0.23 -29.68 16 17 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 18 C 0.01 0.58 5.46 84.66 0.46 1.04 16 19 N -0.93 -54.20 13.29 21.45 0.28 -53.92 16 20 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 24 C -0.15 -5.83 9.70 22.27 0.22 -5.61 16 25 C -0.02 -0.69 9.52 22.27 0.21 -0.47 16 26 C 0.12 2.13 3.13 44.82 0.14 2.27 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 C -0.19 -3.36 7.20 71.98 0.52 -2.85 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.09 0.76 6.86 -2.39 -0.02 0.74 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.11 1.73 6.81 -2.39 -0.02 1.71 16 36 H 0.16 4.05 5.48 -2.91 -0.02 4.03 16 37 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 38 H 0.01 0.76 8.08 -2.39 -0.02 0.74 16 39 H 0.01 0.70 8.08 -2.38 -0.02 0.68 16 40 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 42 H 0.15 4.05 7.62 -2.91 -0.02 4.03 16 43 H 0.06 1.29 3.19 -2.39 -0.01 1.28 16 44 H 0.10 1.21 7.03 -2.39 -0.02 1.19 16 45 H 0.09 1.72 6.58 -2.39 -0.02 1.70 16 Total: -1.00 -69.38 365.16 0.42 -68.96 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 1.00 Total: 15.94 kcal Atomic # 6 Polarization: -60.92 SS G_CDS: 4.22 Total: -56.69 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -1.36 Total: -75.69 kcal Atomic # 8 Polarization: -63.75 SS G_CDS: -5.17 Total: -68.92 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 71.15 SS G_CDS: -0.30 Total: 70.85 kcal Total: -69.38 0.42 -68.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885061232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.607 kcal (2) G-P(sol) polarization free energy of solvation -69.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds