Wall clock time and date at job start Tue Mar 31 2020 23:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.67714 * 2 1 4 4 C 1.53295 * 109.71198 * 239.46157 * 2 1 3 5 5 H 1.09003 * 109.50802 * 172.58849 * 4 2 1 6 6 C 1.53001 * 109.51289 * 52.49003 * 4 2 1 7 7 O 1.42961 * 109.22501 * 292.55966 * 4 2 1 8 8 C 1.42958 * 114.17081 * 297.42513 * 7 4 2 9 9 C 1.52883 * 109.29918 * 62.44266 * 8 7 4 10 10 N 1.47151 * 108.60948 * 307.94077 * 9 8 7 11 11 S 1.65603 * 120.98292 * 230.50030 * 10 9 8 12 12 O 1.42096 * 106.40114 * 156.17594 * 11 10 9 13 13 O 1.42098 * 106.39757 * 23.25684 * 11 10 9 14 14 C 1.76198 * 107.21767 * 269.71771 * 11 10 9 15 15 C 1.38242 * 119.99937 * 89.99497 * 14 11 10 16 16 C 1.38239 * 119.99544 * 180.02562 * 15 14 11 17 17 C 1.38231 * 120.00344 * 359.95664 * 16 15 14 18 18 C 1.50698 * 120.00160 * 180.02562 * 17 16 15 19 19 C 1.50694 * 109.47166 * 90.00049 * 18 17 16 20 20 H 1.08000 * 120.00563 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 C 1.38237 * 120.00067 * 0.27624 * 17 16 15 28 28 C 1.38234 * 120.00224 * 270.02280 * 14 11 10 29 29 H 1.08997 * 109.47665 * 299.48705 * 1 2 3 30 30 H 1.09005 * 109.46932 * 59.48673 * 1 2 3 31 31 H 1.08998 * 109.47404 * 179.47900 * 1 2 3 32 32 H 1.08996 * 109.47381 * 59.99282 * 6 4 2 33 33 H 1.09002 * 109.47236 * 179.97438 * 6 4 2 34 34 H 1.09000 * 109.46672 * 299.99444 * 6 4 2 35 35 H 1.08995 * 109.51656 * 182.50498 * 8 7 4 36 36 H 1.08999 * 109.50930 * 302.65660 * 8 7 4 37 37 H 1.08995 * 109.61833 * 188.11569 * 9 8 7 38 38 H 1.09005 * 109.52030 * 67.70330 * 9 8 7 39 39 H 1.07996 * 119.99726 * 0.02562 * 15 14 11 40 40 H 1.08003 * 119.99332 * 179.97438 * 16 15 14 41 41 H 1.09007 * 109.46871 * 329.99783 * 18 17 16 42 42 H 1.09003 * 109.46889 * 210.00537 * 18 17 16 43 43 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 44 44 H 1.07997 * 120.00430 * 179.72613 * 27 17 16 45 45 H 1.08007 * 119.99594 * 359.97438 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0471 -0.7333 -1.2429 5 1 3.1290 -0.6186 -1.3094 6 6 1.3928 -0.1429 -2.4937 7 8 1.7183 -2.1209 -1.1417 8 6 2.3274 -2.7873 -0.0333 9 6 1.8297 -2.1601 1.2691 10 7 2.0255 -0.7036 1.1937 11 16 2.7872 0.1184 2.4129 12 8 3.3053 1.3075 1.8325 13 8 3.5968 -0.8314 3.0924 14 6 1.5457 0.6230 3.5568 15 6 1.1982 -0.2036 4.6089 16 6 0.2238 0.1922 5.5060 17 6 -0.4025 1.4148 5.3516 18 6 -1.4644 1.8464 6.3299 19 6 -0.8239 2.6020 7.4655 20 1 0.2452 2.7549 7.4775 21 6 -1.6027 3.0983 8.4894 22 7 -2.9046 2.9126 8.4746 23 14 -0.8086 4.0344 9.8974 24 1 -1.8551 4.4598 10.8614 25 1 0.1712 3.1560 10.5854 26 1 -0.1110 5.2320 9.3644 27 6 -0.0585 2.2392 4.2966 28 6 0.9187 1.8452 3.4018 29 1 -0.3634 0.5058 0.8945 30 1 -0.3633 0.5218 -0.8854 31 1 -0.3634 -1.0276 -0.0093 32 1 1.6401 0.9160 -2.5678 33 1 1.7612 -0.6645 -3.3771 34 1 0.3111 -0.2596 -2.4272 35 1 2.0630 -3.8445 -0.0540 36 1 3.4104 -2.6809 -0.0949 37 1 2.3951 -2.5635 2.1091 38 1 0.7703 -2.3818 1.3986 39 1 1.6881 -1.1584 4.7300 40 1 -0.0480 -0.4538 6.3278 41 1 -1.9766 0.9674 6.7214 42 1 -2.1837 2.4909 5.8245 43 1 -3.4525 3.2615 9.1951 44 1 -0.5509 3.1925 4.1734 45 1 1.1901 2.4910 2.5797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885061238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:09 Heat of formation + Delta-G solvation = -99.541839 kcal Electronic energy + Delta-G solvation = -28019.304152 eV Core-core repulsion = 24128.538028 eV Total energy + Delta-G solvation = -3890.766124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.99642 -38.82946 -37.31141 -35.85617 -35.34425 -33.84025 -33.69960 -31.58287 -30.61050 -29.12985 -28.56640 -27.45371 -24.77317 -23.73901 -23.44559 -22.36350 -20.91871 -20.33727 -18.91965 -18.11170 -17.46174 -16.95697 -16.46659 -16.19879 -15.70666 -15.37789 -15.12207 -15.00659 -14.44251 -14.39971 -14.16080 -13.77811 -13.47647 -13.19517 -13.13064 -12.86087 -12.65391 -12.40523 -12.27612 -12.15624 -12.08178 -12.03242 -11.95576 -11.73595 -11.56785 -11.50684 -11.23371 -11.02893 -10.92407 -10.70432 -10.51606 -10.50380 -10.36912 -9.77949 -9.68030 -9.05567 -8.61963 -8.55357 -8.39949 -6.18853 -4.24072 0.36695 1.29770 1.76491 2.83455 3.24718 3.28946 3.32354 3.42005 3.70790 4.05332 4.16087 4.34984 4.39175 4.50986 4.67669 4.79298 4.83232 5.00162 5.04074 5.11801 5.17217 5.18828 5.21187 5.22367 5.32216 5.45120 5.53398 5.61140 5.64310 5.69374 5.75165 5.76741 5.88266 5.99666 6.09881 6.21917 6.28528 6.30288 6.49657 6.80845 6.87281 6.88036 7.26673 7.40411 7.56542 7.75961 8.11229 8.80419 9.40917 10.91147 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.002778 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.663689 B =10076.670794 C =10373.162279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 H 0.109 0.891 4 C 0.083 3.917 5 H 0.064 0.936 6 C -0.148 4.148 7 O -0.373 6.373 8 C 0.053 3.947 9 C 0.082 3.918 10 N -0.999 5.999 11 S 2.693 3.307 12 O -0.962 6.962 13 O -0.962 6.962 14 C -0.702 4.702 15 C -0.023 4.023 16 C -0.145 4.145 17 C 0.027 3.973 18 C 0.040 3.960 19 C -0.519 4.519 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.891 5.891 23 Si 0.899 3.101 24 H -0.285 1.285 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.145 4.145 28 C -0.023 4.023 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.265 0.735 44 H 0.129 0.871 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.466 -9.680 -20.265 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 H 0.127 0.873 4 C 0.024 3.976 5 H 0.082 0.918 6 C -0.205 4.205 7 O -0.292 6.292 8 C -0.025 4.025 9 C -0.044 4.044 10 N -0.836 5.836 11 S 2.789 3.211 12 O -0.952 6.952 13 O -0.952 6.952 14 C -0.792 4.792 15 C -0.043 4.043 16 C -0.164 4.164 17 C 0.027 3.973 18 C 0.003 3.997 19 C -0.557 4.557 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.530 5.530 23 Si 0.726 3.274 24 H -0.211 1.211 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.164 4.164 28 C -0.042 4.042 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.147 0.853 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.091 -9.581 -20.224 23.797 hybrid contribution -0.223 0.751 1.541 1.729 sum 7.868 -8.830 -18.683 22.112 Atomic orbital electron populations 1.22161 0.94019 1.03328 1.02728 1.21741 0.95818 0.96997 0.84493 0.87271 1.22405 0.98809 0.81970 0.94454 0.91846 1.21858 1.02099 1.00731 0.95840 1.87938 1.72112 1.21623 1.47514 1.22819 0.97339 0.96945 0.85421 1.22067 1.03006 0.79271 1.00028 1.58000 1.76848 1.16004 1.32749 1.01730 0.73847 0.72925 0.72599 1.93539 1.77142 1.47216 1.77332 1.93541 1.65235 1.62488 1.73983 1.30334 1.24958 1.06257 1.17666 1.20750 0.94120 0.97452 0.91934 1.21242 0.97691 0.97687 0.99749 1.21116 0.93357 0.90971 0.91873 1.18531 0.91555 0.97533 0.92059 1.20930 0.93946 1.35430 1.05397 0.92350 1.25003 0.94837 0.96023 0.98234 1.69937 1.04228 1.45551 1.33245 0.86533 0.78949 0.80287 0.81590 1.21078 1.20031 1.20026 1.21242 0.98911 1.00593 0.95627 1.20744 0.92770 0.92953 0.97775 0.91811 0.90981 0.91411 0.90620 0.91561 0.90958 0.87553 0.92624 0.87829 0.90284 0.85400 0.85340 0.94723 0.94723 0.92548 0.85340 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 8.64 37.16 0.32 -1.15 16 2 C 0.12 1.13 2.92 -67.42 -0.20 0.93 16 3 H 0.11 1.06 6.95 -51.93 -0.36 0.70 16 4 C 0.08 0.73 3.10 -26.58 -0.08 0.65 16 5 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 6 C -0.15 -0.99 9.01 37.16 0.33 -0.65 16 7 O -0.37 -3.54 10.02 -35.23 -0.35 -3.89 16 8 C 0.05 0.43 6.97 37.10 0.26 0.69 16 9 C 0.08 0.74 6.29 -3.75 -0.02 0.72 16 10 N -1.00 -10.95 3.04 -106.26 -0.32 -11.28 16 11 S 2.69 38.06 5.75 -107.50 -0.62 37.44 16 12 O -0.96 -15.39 15.90 -57.17 -0.91 -16.29 16 13 O -0.96 -15.32 15.90 -57.17 -0.91 -16.23 16 14 C -0.70 -11.09 5.97 -39.58 -0.24 -11.33 16 15 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16 16 C -0.14 -2.68 9.70 -39.58 -0.38 -3.06 16 17 C 0.03 0.56 5.07 -104.63 -0.53 0.03 16 18 C 0.04 0.97 5.10 -29.04 -0.15 0.83 16 19 C -0.52 -14.06 9.09 -34.44 -0.31 -14.37 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 23 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 C -0.14 -2.67 9.70 -39.58 -0.38 -3.06 16 28 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.52 6.42 -51.93 -0.33 0.19 16 31 H 0.07 0.63 7.25 -51.93 -0.38 0.25 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.47 6.38 -51.93 -0.33 0.14 16 35 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.90 6.94 -51.93 -0.36 0.54 16 38 H 0.08 0.65 7.69 -51.93 -0.40 0.25 16 39 H 0.13 1.77 7.62 -52.49 -0.40 1.37 16 40 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 41 H 0.03 0.88 8.09 -51.92 -0.42 0.46 16 42 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 45 H 0.13 1.78 7.62 -52.48 -0.40 1.38 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -32.46 374.87 -10.71 -43.17 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.72 Total: -0.20 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: -2.24 Total: -29.70 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.41 Total: -36.02 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -2.17 Total: -36.42 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 38.06 SS G_CDS: -0.62 Total: 37.44 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.46 -10.71 -43.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885061238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.371 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds