Wall clock time and date at job start Tue Mar 31 2020 23:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.67714 * 2 1 4 4 C 1.53295 * 109.71198 * 239.46157 * 2 1 3 5 5 H 1.09003 * 109.50802 * 172.58849 * 4 2 1 6 6 C 1.53001 * 109.51289 * 52.49003 * 4 2 1 7 7 O 1.42961 * 109.22501 * 292.55966 * 4 2 1 8 8 C 1.42958 * 114.17081 * 297.42513 * 7 4 2 9 9 C 1.52883 * 109.29918 * 62.44266 * 8 7 4 10 10 N 1.47151 * 108.60948 * 307.94077 * 9 8 7 11 11 S 1.65603 * 120.98292 * 230.50030 * 10 9 8 12 12 O 1.42096 * 106.40114 * 156.17594 * 11 10 9 13 13 O 1.42098 * 106.39757 * 23.25684 * 11 10 9 14 14 C 1.76198 * 107.21767 * 269.71771 * 11 10 9 15 15 C 1.38242 * 119.99937 * 89.99497 * 14 11 10 16 16 C 1.38239 * 119.99544 * 180.02562 * 15 14 11 17 17 C 1.38231 * 120.00344 * 359.95664 * 16 15 14 18 18 C 1.50698 * 120.00160 * 180.02562 * 17 16 15 19 19 C 1.50694 * 109.47166 * 90.00049 * 18 17 16 20 20 H 1.08000 * 120.00563 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 C 1.38237 * 120.00067 * 0.27624 * 17 16 15 28 28 C 1.38234 * 120.00224 * 270.02280 * 14 11 10 29 29 H 1.08997 * 109.47665 * 299.48705 * 1 2 3 30 30 H 1.09005 * 109.46932 * 59.48673 * 1 2 3 31 31 H 1.08998 * 109.47404 * 179.47900 * 1 2 3 32 32 H 1.08996 * 109.47381 * 59.99282 * 6 4 2 33 33 H 1.09002 * 109.47236 * 179.97438 * 6 4 2 34 34 H 1.09000 * 109.46672 * 299.99444 * 6 4 2 35 35 H 1.08995 * 109.51656 * 182.50498 * 8 7 4 36 36 H 1.08999 * 109.50930 * 302.65660 * 8 7 4 37 37 H 1.08995 * 109.61833 * 188.11569 * 9 8 7 38 38 H 1.09005 * 109.52030 * 67.70330 * 9 8 7 39 39 H 1.07996 * 119.99726 * 0.02562 * 15 14 11 40 40 H 1.08003 * 119.99332 * 179.97438 * 16 15 14 41 41 H 1.09007 * 109.46871 * 329.99783 * 18 17 16 42 42 H 1.09003 * 109.46889 * 210.00537 * 18 17 16 43 43 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 44 44 H 1.07997 * 120.00430 * 179.72613 * 27 17 16 45 45 H 1.08007 * 119.99594 * 359.97438 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0471 -0.7333 -1.2429 5 1 3.1290 -0.6186 -1.3094 6 6 1.3928 -0.1429 -2.4937 7 8 1.7183 -2.1209 -1.1417 8 6 2.3274 -2.7873 -0.0333 9 6 1.8297 -2.1601 1.2691 10 7 2.0255 -0.7036 1.1937 11 16 2.7872 0.1184 2.4129 12 8 3.3053 1.3075 1.8325 13 8 3.5968 -0.8314 3.0924 14 6 1.5457 0.6230 3.5568 15 6 1.1982 -0.2036 4.6089 16 6 0.2238 0.1922 5.5060 17 6 -0.4025 1.4148 5.3516 18 6 -1.4644 1.8464 6.3299 19 6 -0.8239 2.6020 7.4655 20 1 0.2452 2.7549 7.4775 21 6 -1.6027 3.0983 8.4894 22 7 -2.9046 2.9126 8.4746 23 14 -0.8086 4.0344 9.8974 24 1 -1.8551 4.4598 10.8614 25 1 0.1712 3.1560 10.5854 26 1 -0.1110 5.2320 9.3644 27 6 -0.0585 2.2392 4.2966 28 6 0.9187 1.8452 3.4018 29 1 -0.3634 0.5058 0.8945 30 1 -0.3633 0.5218 -0.8854 31 1 -0.3634 -1.0276 -0.0093 32 1 1.6401 0.9160 -2.5678 33 1 1.7612 -0.6645 -3.3771 34 1 0.3111 -0.2596 -2.4272 35 1 2.0630 -3.8445 -0.0540 36 1 3.4104 -2.6809 -0.0949 37 1 2.3951 -2.5635 2.1091 38 1 0.7703 -2.3818 1.3986 39 1 1.6881 -1.1584 4.7300 40 1 -0.0480 -0.4538 6.3278 41 1 -1.9766 0.9674 6.7214 42 1 -2.1837 2.4909 5.8245 43 1 -3.4525 3.2615 9.1951 44 1 -0.5509 3.1925 4.1734 45 1 1.1901 2.4910 2.5797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885061238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:09 Heat of formation + Delta-G solvation = -120.078257 kcal Electronic energy + Delta-G solvation = -28020.194678 eV Core-core repulsion = 24128.538028 eV Total energy + Delta-G solvation = -3891.656650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.69860 -40.25955 -38.51141 -37.06570 -36.11793 -35.61361 -34.50679 -33.34266 -31.99392 -29.75731 -29.32782 -29.25004 -25.67197 -25.39080 -24.15216 -23.73124 -22.47431 -21.18045 -19.91892 -19.14008 -18.68018 -18.52413 -17.74788 -17.00738 -16.87904 -16.63940 -16.24732 -16.03345 -15.85220 -15.60610 -15.33618 -14.84492 -14.62376 -14.49904 -14.15165 -13.98556 -13.87558 -13.47051 -13.43348 -13.40093 -13.26906 -13.18546 -13.04116 -12.73281 -12.69599 -12.67117 -12.64511 -12.36869 -12.18388 -12.06907 -11.85819 -11.72013 -11.50179 -11.28229 -11.13689 -10.66479 -10.03073 -9.99168 -9.78703 -8.28498 -6.41509 -0.76659 -0.09474 0.36902 1.37558 1.39075 1.47609 1.80061 2.33386 2.51916 2.72857 2.81641 3.04094 3.11777 3.60086 3.74266 3.83620 3.93367 4.02546 4.06851 4.13375 4.18263 4.33095 4.39810 4.43850 4.44771 4.52385 4.57844 4.74899 4.78603 4.84474 4.87785 4.91684 5.00106 5.04071 5.07157 5.13525 5.21928 5.23978 5.30529 5.36559 5.40388 5.52430 5.65302 5.83755 5.89645 6.07962 6.23615 6.70034 7.27625 8.81408 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.002778 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.663689 B =10076.670794 C =10373.162279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.109 3.891 3 H 0.110 0.890 4 C 0.081 3.919 5 H 0.063 0.937 6 C -0.146 4.146 7 O -0.383 6.383 8 C 0.051 3.949 9 C 0.074 3.926 10 N -0.992 5.992 11 S 2.715 3.285 12 O -0.978 6.978 13 O -0.977 6.977 14 C -0.700 4.700 15 C -0.019 4.019 16 C -0.154 4.154 17 C -0.002 4.002 18 C 0.049 3.951 19 C -0.536 4.536 20 H 0.053 0.947 21 C 0.010 3.990 22 N -0.925 5.925 23 Si 0.964 3.036 24 H -0.278 1.278 25 H -0.269 1.269 26 H -0.269 1.269 27 C -0.153 4.153 28 C -0.019 4.019 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.131 0.869 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.155 0.845 40 H 0.130 0.870 41 H 0.013 0.987 42 H 0.013 0.987 43 H 0.268 0.732 44 H 0.130 0.870 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.924 -10.242 -21.717 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.003 3.997 3 H 0.128 0.872 4 C 0.022 3.978 5 H 0.081 0.919 6 C -0.203 4.203 7 O -0.302 6.302 8 C -0.027 4.027 9 C -0.051 4.051 10 N -0.831 5.831 11 S 2.808 3.192 12 O -0.969 6.969 13 O -0.968 6.968 14 C -0.787 4.787 15 C -0.038 4.038 16 C -0.173 4.173 17 C -0.003 4.003 18 C 0.012 3.988 19 C -0.574 4.574 20 H 0.072 0.928 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.788 3.212 24 H -0.203 1.203 25 H -0.194 1.194 26 H -0.194 1.194 27 C -0.172 4.172 28 C -0.038 4.038 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.148 0.852 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.173 0.827 40 H 0.148 0.852 41 H 0.031 0.969 42 H 0.032 0.968 43 H 0.077 0.923 44 H 0.148 0.852 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 9.540 -10.138 -21.660 25.748 hybrid contribution -0.640 0.837 1.848 2.128 sum 8.900 -9.300 -19.812 23.626 Atomic orbital electron populations 1.22149 0.93454 1.03304 1.03035 1.21968 0.96283 0.97164 0.84274 0.87226 1.22503 0.98961 0.81749 0.94620 0.91942 1.21886 1.02055 1.01456 0.94949 1.87937 1.72352 1.21911 1.47953 1.22974 0.97387 0.98005 0.84334 1.22328 1.03851 0.77897 1.01019 1.57804 1.76642 1.16808 1.31880 1.01116 0.73303 0.72414 0.72350 1.93515 1.77500 1.48406 1.77440 1.93518 1.65738 1.62715 1.74790 1.30819 1.24358 1.05798 1.17773 1.21006 0.93184 0.98502 0.91127 1.21301 0.98354 0.97071 1.00557 1.20818 0.93986 0.92841 0.92623 1.18252 0.92223 0.95930 0.92363 1.21264 0.93863 1.35732 1.06521 0.92822 1.25863 0.95317 0.96877 1.00811 1.70047 1.05540 1.46602 1.34224 0.85521 0.78205 0.79041 0.78457 1.20329 1.19373 1.19360 1.21295 0.99749 1.00534 0.95652 1.20985 0.91689 0.93430 0.97670 0.93047 0.89138 0.91607 0.89358 0.91086 0.90742 0.85155 0.92505 0.87398 0.89368 0.82742 0.85207 0.96859 0.96847 0.92332 0.85202 0.82886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 8.64 71.98 0.62 -1.95 16 2 C 0.11 1.88 2.92 44.97 0.13 2.01 16 3 H 0.11 1.90 6.95 -2.39 -0.02 1.88 16 4 C 0.08 1.24 3.10 30.69 0.10 1.33 16 5 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 6 C -0.15 -1.59 9.01 71.98 0.65 -0.94 16 7 O -0.38 -6.31 10.02 -148.98 -1.49 -7.80 16 8 C 0.05 0.69 6.97 71.94 0.50 1.19 16 9 C 0.07 1.16 6.29 86.22 0.54 1.71 16 10 N -0.99 -19.65 3.04 -490.11 -1.49 -21.14 16 11 S 2.71 71.38 5.75 -56.49 -0.32 71.05 16 12 O -0.98 -29.37 15.90 -128.00 -2.04 -31.41 16 13 O -0.98 -29.08 15.90 -128.00 -2.03 -31.12 16 14 C -0.70 -21.05 5.97 22.27 0.13 -20.92 16 15 C -0.02 -0.60 9.52 22.27 0.21 -0.38 16 16 C -0.15 -5.74 9.70 22.27 0.22 -5.52 16 17 C 0.00 -0.10 5.07 -19.87 -0.10 -0.20 16 18 C 0.05 2.52 5.10 29.10 0.15 2.67 16 19 C -0.54 -29.88 9.09 25.60 0.23 -29.65 16 20 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 21 C 0.01 0.58 5.46 84.66 0.46 1.05 16 22 N -0.92 -54.18 13.29 21.45 0.28 -53.89 16 23 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 C -0.15 -5.72 9.70 22.27 0.22 -5.50 16 28 C -0.02 -0.58 9.52 22.27 0.21 -0.37 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 1.10 6.42 -2.38 -0.02 1.09 16 31 H 0.06 1.08 7.25 -2.39 -0.02 1.07 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.78 6.38 -2.39 -0.02 0.76 16 35 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.11 1.62 6.94 -2.39 -0.02 1.61 16 38 H 0.09 1.25 7.69 -2.38 -0.02 1.23 16 39 H 0.16 3.95 7.62 -2.91 -0.02 3.93 16 40 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 41 H 0.01 0.71 8.09 -2.38 -0.02 0.69 16 42 H 0.01 0.72 8.08 -2.39 -0.02 0.70 16 43 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 44 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 45 H 0.15 3.97 7.62 -2.91 -0.02 3.94 16 Total: -1.00 -69.84 374.87 0.19 -69.65 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.98 Total: 14.57 kcal Atomic # 6 Polarization: -59.75 SS G_CDS: 4.27 Total: -55.48 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -1.20 Total: -75.04 kcal Atomic # 8 Polarization: -64.76 SS G_CDS: -5.56 Total: -70.32 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 71.38 SS G_CDS: -0.32 Total: 71.05 kcal Total: -69.84 0.19 -69.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885061238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.432 kcal (2) G-P(sol) polarization free energy of solvation -69.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds