Wall clock time and date at job start Tue Mar 31 2020 23:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.51211 * 2 1 4 4 O 1.42958 * 109.55238 * 239.87448 * 2 1 3 5 5 C 1.42967 * 114.16276 * 177.46905 * 4 2 1 6 6 C 1.52874 * 109.30090 * 62.45056 * 5 4 2 7 7 N 1.47153 * 108.60422 * 307.93151 * 6 5 4 8 8 S 1.65602 * 120.98144 * 230.49821 * 7 6 5 9 9 O 1.42105 * 106.39808 * 148.81840 * 8 7 6 10 10 O 1.42094 * 106.40426 * 15.89946 * 8 7 6 11 11 C 1.76203 * 107.22174 * 262.35644 * 8 7 6 12 12 C 1.38239 * 119.99487 * 89.99855 * 11 8 7 13 13 C 1.38229 * 119.99527 * 179.97438 * 12 11 8 14 14 C 1.38233 * 120.00292 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00111 * 179.69565 * 14 13 12 16 16 C 1.50703 * 109.46804 * 90.00546 * 15 14 13 17 17 H 1.08002 * 120.00092 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00135 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99971 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00107 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46962 * 59.99849 * 20 18 16 22 22 H 1.48505 * 109.47088 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47084 * 299.99691 * 20 18 16 24 24 C 1.38239 * 120.00179 * 359.97438 * 14 13 12 25 25 C 1.38229 * 119.99504 * 0.03818 * 24 14 13 26 26 C 1.47149 * 118.03607 * 50.23205 * 7 6 5 27 27 H 1.08997 * 109.68543 * 69.43668 * 26 7 6 28 28 C 1.52999 * 109.68329 * 189.95392 * 26 7 6 29 29 H 1.08996 * 109.46743 * 299.89500 * 1 2 3 30 30 H 1.08994 * 109.47010 * 59.90303 * 1 2 3 31 31 H 1.09004 * 109.46417 * 179.89906 * 1 2 3 32 32 H 1.09007 * 109.50849 * 182.50266 * 5 4 2 33 33 H 1.09001 * 109.51399 * 302.65405 * 5 4 2 34 34 H 1.09005 * 109.62097 * 188.11652 * 6 5 4 35 35 H 1.08996 * 109.52956 * 67.69660 * 6 5 4 36 36 H 1.07998 * 120.00053 * 0.02562 * 12 11 8 37 37 H 1.08007 * 119.99928 * 180.02562 * 13 12 11 38 38 H 1.09003 * 109.47371 * 209.99969 * 15 14 13 39 39 H 1.08998 * 109.47007 * 330.00589 * 15 14 13 40 40 H 0.97005 * 120.00011 * 180.02562 * 19 18 16 41 41 H 1.07998 * 120.00033 * 179.97438 * 24 14 13 42 42 H 1.08006 * 119.99910 * 179.97438 * 25 24 14 43 43 H 1.09001 * 109.47135 * 66.24977 * 28 26 7 44 44 H 1.09005 * 109.47341 * 186.24976 * 28 26 7 45 45 H 1.09004 * 109.47239 * 306.25076 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 8 2.0085 -0.6761 -1.1652 5 6 3.4323 -0.6842 -1.2939 6 6 4.0422 -1.4387 -0.1124 7 7 3.5014 -0.8745 1.1345 8 16 4.5059 -0.4155 2.3685 9 8 3.8664 0.6717 3.0230 10 8 5.8108 -0.3293 1.8127 11 6 4.5459 -1.7408 3.5290 12 6 5.4929 -2.7402 3.4043 13 6 5.5246 -3.7796 4.3150 14 6 4.6091 -3.8200 5.3500 15 6 4.6394 -4.9569 6.3388 16 6 5.5445 -4.5981 7.4891 17 1 6.0479 -3.6426 7.5025 18 6 5.7309 -5.4900 8.5238 19 7 5.1185 -6.6537 8.5073 20 14 6.8535 -5.0455 9.9493 21 1 6.3433 -3.8217 10.6180 22 1 6.8832 -6.1657 10.9238 23 1 8.2256 -4.7957 9.4395 24 6 3.6621 -2.8207 5.4746 25 6 3.6303 -1.7814 4.5637 26 6 2.0422 -0.7247 1.2501 27 1 1.5766 -1.7076 1.3211 28 6 1.7055 0.0961 2.4966 29 1 -0.3633 0.5122 0.8909 30 1 -0.3633 0.5153 -0.8891 31 1 -0.3632 -1.0277 -0.0018 32 1 3.7109 -1.1773 -2.2252 33 1 3.8033 0.3407 -1.2986 34 1 5.1263 -1.3260 -0.1264 35 1 3.7815 -2.4948 -0.1808 36 1 6.2084 -2.7083 2.5960 37 1 6.2648 -4.5602 4.2180 38 1 3.6321 -5.1402 6.7127 39 1 5.0140 -5.8552 5.8482 40 1 5.2493 -7.2811 9.2355 41 1 2.9466 -2.8525 6.2829 42 1 2.8901 -1.0008 4.6608 43 1 2.0697 1.1156 2.3696 44 1 0.6252 0.1116 2.6407 45 1 2.1819 -0.3540 3.3676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885061247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:16 Heat of formation + Delta-G solvation = -104.629203 kcal Electronic energy + Delta-G solvation = -28116.967615 eV Core-core repulsion = 24225.980886 eV Total energy + Delta-G solvation = -3890.986728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.64389 -40.28020 -38.68192 -37.07559 -36.20677 -35.61976 -34.56224 -33.35757 -32.03405 -30.00651 -29.26291 -29.07306 -25.63597 -25.23632 -23.78103 -23.77209 -22.47301 -21.93332 -20.12893 -18.99505 -18.57984 -18.34313 -17.75220 -17.18342 -16.88874 -16.47153 -16.30697 -16.07800 -15.69421 -15.62551 -15.60710 -15.07200 -14.63966 -14.61367 -14.19701 -13.97527 -13.85235 -13.47324 -13.42972 -13.41037 -13.34654 -13.20478 -12.94596 -12.72837 -12.68874 -12.65964 -12.48877 -12.16110 -12.14056 -11.99293 -11.79497 -11.71571 -11.42616 -11.31046 -11.04310 -10.66522 -10.03991 -10.00409 -9.78817 -8.28504 -6.41646 -0.74284 -0.09982 0.35452 1.37630 1.39212 1.47748 1.81120 2.33379 2.53237 2.72730 2.79221 3.04062 3.16908 3.54184 3.63676 3.77162 3.90160 4.01873 4.08808 4.11999 4.16648 4.25964 4.40078 4.43291 4.44590 4.53053 4.62384 4.69599 4.77394 4.83805 4.85744 4.90034 5.00543 5.03665 5.05738 5.12277 5.21010 5.23660 5.29455 5.33130 5.51858 5.52691 5.65155 5.82929 5.88829 6.07600 6.20882 6.69841 7.27557 8.81400 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.002785 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.235690 B =10051.116233 C =10263.465187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.079 3.921 3 H 0.065 0.935 4 O -0.388 6.388 5 C 0.051 3.949 6 C 0.072 3.928 7 N -0.994 5.994 8 S 2.713 3.287 9 O -0.966 6.966 10 O -0.983 6.983 11 C -0.702 4.702 12 C -0.021 4.021 13 C -0.154 4.154 14 C -0.003 4.003 15 C 0.049 3.951 16 C -0.536 4.536 17 H 0.054 0.946 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.964 3.036 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.154 4.154 25 C -0.023 4.023 26 C 0.121 3.879 27 H 0.090 0.910 28 C -0.189 4.189 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.132 0.868 33 H 0.057 0.943 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.153 0.847 37 H 0.130 0.870 38 H 0.014 0.986 39 H 0.013 0.987 40 H 0.268 0.732 41 H 0.132 0.868 42 H 0.160 0.840 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.117 13.412 -20.122 25.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.020 3.980 3 H 0.083 0.917 4 O -0.307 6.307 5 C -0.028 4.028 6 C -0.053 4.053 7 N -0.835 5.835 8 S 2.806 3.194 9 O -0.957 6.957 10 O -0.973 6.973 11 C -0.789 4.789 12 C -0.041 4.041 13 C -0.173 4.173 14 C -0.003 4.003 15 C 0.012 3.988 16 C -0.574 4.574 17 H 0.072 0.928 18 C -0.189 4.189 19 N -0.564 5.564 20 Si 0.788 3.212 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.194 1.194 24 C -0.172 4.172 25 C -0.042 4.042 26 C 0.015 3.985 27 H 0.108 0.892 28 C -0.247 4.247 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.150 0.850 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.107 0.893 36 H 0.171 0.829 37 H 0.148 0.852 38 H 0.032 0.968 39 H 0.031 0.969 40 H 0.077 0.923 41 H 0.150 0.850 42 H 0.177 0.823 43 H 0.105 0.895 44 H 0.117 0.883 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.791 13.935 -20.083 25.656 hybrid contribution 0.777 -1.061 1.650 2.110 sum -7.014 12.875 -18.432 23.552 Atomic orbital electron populations 1.21834 0.90675 1.03671 1.03943 1.22602 0.96701 0.94918 0.83806 0.91734 1.87940 1.21642 1.77710 1.43435 1.22997 0.80579 1.00579 0.98598 1.22369 1.00514 0.99522 0.82875 1.57793 1.17084 1.80069 1.28524 1.01307 0.71938 0.73681 0.72438 1.93646 1.75052 1.51100 1.75878 1.93493 1.38721 1.86731 1.78393 1.30870 1.08275 1.21376 1.18349 1.21004 0.94692 0.90789 0.97570 1.21307 1.00049 1.00238 0.95731 1.20833 0.91657 0.95269 0.92582 1.18258 0.96856 0.91416 0.92262 1.21263 1.28184 1.02521 1.05427 0.92800 1.25866 0.97353 0.94677 1.00986 1.70050 1.43942 1.08549 1.33886 0.85515 0.79183 0.78070 0.78416 1.19311 1.20330 1.19390 1.21326 1.00367 0.95086 1.00470 1.21157 0.95389 0.96425 0.91179 1.21949 0.78222 1.01056 0.97270 0.89211 1.22854 1.04422 1.02085 0.95323 0.88958 0.91024 0.91475 0.85006 0.92421 0.87272 0.89340 0.82913 0.85216 0.96767 0.96887 0.92329 0.85040 0.82289 0.89493 0.88276 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.38 71.98 0.68 -0.95 16 2 C 0.08 1.24 2.85 30.70 0.09 1.33 16 3 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 4 O -0.39 -6.76 10.39 -148.98 -1.55 -8.30 16 5 C 0.05 0.71 6.97 71.94 0.50 1.21 16 6 C 0.07 1.18 6.70 86.21 0.58 1.75 16 7 N -0.99 -20.14 3.35 -490.13 -1.64 -21.78 16 8 S 2.71 71.14 5.31 -56.49 -0.30 70.84 16 9 O -0.97 -27.37 12.56 -128.00 -1.61 -28.98 16 10 O -0.98 -29.61 15.75 -128.00 -2.02 -31.62 16 11 C -0.70 -21.28 5.97 22.27 0.13 -21.15 16 12 C -0.02 -0.68 9.52 22.27 0.21 -0.47 16 13 C -0.15 -5.83 9.70 22.27 0.22 -5.61 16 14 C 0.00 -0.13 5.07 -19.86 -0.10 -0.23 16 15 C 0.05 2.52 5.11 29.10 0.15 2.67 16 16 C -0.54 -29.91 9.09 25.60 0.23 -29.67 16 17 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 18 C 0.01 0.58 5.46 84.65 0.46 1.04 16 19 N -0.93 -54.21 13.29 21.45 0.28 -53.92 16 20 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 C -0.15 -5.72 9.70 22.27 0.22 -5.51 16 25 C -0.02 -0.71 8.93 22.27 0.20 -0.51 16 26 C 0.12 2.13 3.15 44.97 0.14 2.27 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 C -0.19 -3.37 7.20 71.98 0.52 -2.85 16 29 H 0.09 0.76 6.87 -2.39 -0.02 0.74 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.11 1.73 6.81 -2.38 -0.02 1.71 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.15 4.05 7.62 -2.91 -0.02 4.03 16 37 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 38 H 0.01 0.76 8.08 -2.39 -0.02 0.74 16 39 H 0.01 0.70 8.09 -2.39 -0.02 0.68 16 40 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 41 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 42 H 0.16 4.05 5.47 -2.91 -0.02 4.03 16 43 H 0.09 1.72 6.59 -2.39 -0.02 1.70 16 44 H 0.10 1.21 7.05 -2.38 -0.02 1.19 16 45 H 0.06 1.29 3.18 -2.39 -0.01 1.28 16 Total: -1.00 -69.37 365.17 0.42 -68.96 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 1.00 Total: 15.96 kcal Atomic # 6 Polarization: -60.92 SS G_CDS: 4.22 Total: -56.70 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -1.36 Total: -75.70 kcal Atomic # 8 Polarization: -63.74 SS G_CDS: -5.17 Total: -68.91 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 71.14 SS G_CDS: -0.30 Total: 70.84 kcal Total: -69.37 0.42 -68.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885061247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.672 kcal (2) G-P(sol) polarization free energy of solvation -69.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds