Wall clock time and date at job start Tue Mar 31 2020 23:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.45884 * 2 1 4 4 C 1.54807 * 109.45842 * 240.03709 * 2 1 3 5 5 O 1.38014 * 109.48214 * 172.09277 * 4 2 1 6 6 C 1.42159 * 119.43743 * 63.42396 * 5 4 2 7 7 C 1.51535 * 108.76744 * 272.78600 * 6 5 4 8 8 C 1.53943 * 109.72920 * 91.29127 * 7 6 5 9 9 N 1.45114 * 109.46212 * 119.97643 * 2 1 3 10 10 S 1.65609 * 118.75708 * 29.30901 * 9 2 1 11 11 O 1.42097 * 106.40114 * 161.65743 * 10 9 2 12 12 O 1.42104 * 106.39879 * 28.73330 * 10 9 2 13 13 C 1.76206 * 107.21595 * 275.19774 * 10 9 2 14 14 C 1.38227 * 119.99644 * 269.71971 * 13 10 9 15 15 C 1.38238 * 119.99550 * 179.76586 * 14 13 10 16 16 C 1.38235 * 120.00080 * 0.51322 * 15 14 13 17 17 C 1.50704 * 119.99922 * 179.71864 * 16 15 14 18 18 C 1.50695 * 109.47481 * 270.02529 * 17 16 15 19 19 H 1.08002 * 119.99779 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00187 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99789 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99651 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46960 * 90.00293 * 22 20 18 24 24 H 1.48498 * 109.46963 * 209.99992 * 22 20 18 25 25 H 1.48497 * 109.47390 * 330.00357 * 22 20 18 26 26 C 1.38227 * 119.99885 * 359.74381 * 16 15 14 27 27 C 1.38232 * 119.99737 * 89.99794 * 13 10 9 28 28 H 1.09005 * 109.46964 * 292.19094 * 1 2 3 29 29 H 1.09006 * 109.46882 * 52.18763 * 1 2 3 30 30 H 1.09001 * 109.47214 * 172.18685 * 1 2 3 31 31 H 1.09002 * 109.46635 * 292.09242 * 4 2 1 32 32 H 1.09000 * 109.47295 * 52.08769 * 4 2 1 33 33 H 1.09001 * 109.58754 * 32.57174 * 6 5 4 34 34 H 1.08998 * 109.59110 * 152.99984 * 6 5 4 35 35 H 1.08997 * 109.45121 * 211.43022 * 7 6 5 36 36 H 1.09002 * 109.45212 * 331.38451 * 7 6 5 37 37 H 1.09000 * 109.36794 * 199.90766 * 8 7 6 38 38 H 1.09001 * 109.17798 * 80.58245 * 8 7 6 39 39 H 1.08004 * 120.00372 * 0.02562 * 14 13 10 40 40 H 1.08008 * 120.00000 * 180.23140 * 15 14 13 41 41 H 1.09004 * 109.46901 * 30.02711 * 17 16 15 42 42 H 1.08998 * 109.46818 * 150.01830 * 17 16 15 43 43 H 0.97001 * 119.99586 * 179.97438 * 21 20 18 44 44 H 1.08001 * 119.99888 * 179.97438 * 26 16 15 45 45 H 1.07994 * 120.00633 * 0.02562 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0457 -0.7290 -1.2646 5 8 3.4142 -0.5763 -1.3580 6 6 4.2492 -1.1254 -0.3470 7 6 4.3928 -0.1119 0.7704 8 6 3.2976 -0.3446 1.8270 9 7 2.0135 -0.6836 1.1852 10 16 1.0853 -1.8854 1.8462 11 8 1.9482 -2.6456 2.6809 12 8 0.3410 -2.4517 0.7764 13 6 -0.0855 -1.1131 2.9128 14 6 0.2229 -0.9082 4.2446 15 6 -0.6938 -0.2980 5.0803 16 6 -1.9228 0.0978 4.5865 17 6 -2.9245 0.7574 5.4991 18 6 -3.7989 -0.2955 6.1299 19 1 -3.6450 -1.3380 5.8933 20 6 -4.7961 0.0722 7.0082 21 7 -5.5595 -0.8466 7.5582 22 14 -5.0627 1.8753 7.4167 23 1 -6.0333 2.4618 6.4579 24 1 -5.5962 1.9964 8.7973 25 1 -3.7709 2.6012 7.3197 26 6 -2.2331 -0.1119 3.2560 27 6 -1.3144 -0.7173 2.4190 28 1 -0.3633 0.3882 0.9516 29 1 -0.3633 0.6301 -0.8119 30 1 -0.3634 -1.0181 -0.1397 31 1 1.8023 -1.7894 -1.1973 32 1 1.5714 -0.3028 -2.1485 33 1 3.7987 -2.0381 0.0431 34 1 5.2304 -1.3497 -0.7652 35 1 5.3734 -0.2192 1.2339 36 1 4.2919 0.8941 0.3631 37 1 3.1723 0.5595 2.4228 38 1 3.5985 -1.1637 2.4801 39 1 1.1815 -1.2212 4.6314 40 1 -0.4515 -0.1345 6.1201 41 1 -2.3982 1.3077 6.2790 42 1 -3.5427 1.4457 4.9228 43 1 -6.2608 -0.5880 8.1764 44 1 -3.1935 0.1970 2.8703 45 1 -1.5572 -0.8818 1.3796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885069708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:29 Heat of formation + Delta-G solvation = -78.128677 kcal Electronic energy + Delta-G solvation = -28449.207602 eV Core-core repulsion = 24559.370022 eV Total energy + Delta-G solvation = -3889.837579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.98466 -38.99945 -37.55787 -36.23993 -35.83646 -33.99462 -33.65517 -31.80745 -30.83916 -29.74011 -28.06826 -27.17835 -25.43552 -23.53924 -22.55146 -22.23780 -21.43118 -20.72726 -18.80989 -17.89994 -17.35981 -17.05559 -16.93768 -16.72540 -16.20106 -15.53585 -15.17832 -14.90324 -14.56618 -14.40070 -14.10685 -13.83944 -13.54424 -13.44962 -13.30099 -12.95703 -12.79984 -12.67113 -12.49852 -12.17927 -12.07731 -11.95422 -11.90882 -11.81832 -11.58951 -11.40823 -11.00224 -10.94294 -10.85756 -10.62319 -10.48926 -10.26491 -10.12886 -9.88244 -9.57703 -9.15876 -8.73000 -8.64444 -8.45875 -6.21053 -4.22773 0.36693 1.21218 1.68178 2.82151 3.18064 3.26729 3.27320 3.50116 3.62829 3.96596 4.23741 4.28209 4.35124 4.49042 4.58905 4.77757 4.80965 4.93433 5.05281 5.07908 5.14101 5.15112 5.26195 5.31811 5.34040 5.42557 5.53199 5.54866 5.64268 5.68733 5.71529 5.76926 5.79091 5.85132 6.11374 6.18387 6.20499 6.36595 6.47479 6.66125 6.66689 6.78126 7.25070 7.26551 7.31794 7.50790 8.31883 8.82467 9.37107 10.91477 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025164 B = 0.002867 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.452889 B = 9763.521774 C = 9852.588443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.120 3.880 3 H 0.092 0.908 4 C 0.059 3.941 5 O -0.388 6.388 6 C 0.072 3.928 7 C -0.159 4.159 8 C 0.108 3.892 9 N -0.994 5.994 10 S 2.690 3.310 11 O -0.965 6.965 12 O -0.959 6.959 13 C -0.701 4.701 14 C -0.021 4.021 15 C -0.143 4.143 16 C 0.032 3.968 17 C 0.006 3.994 18 C -0.521 4.521 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.894 5.894 22 Si 0.879 3.121 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.265 1.265 26 C -0.144 4.144 27 C -0.029 4.029 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.267 0.733 44 H 0.130 0.870 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.913 3.976 -16.053 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C 0.014 3.986 3 H 0.110 0.890 4 C -0.020 4.020 5 O -0.306 6.306 6 C -0.004 4.004 7 C -0.198 4.198 8 C -0.017 4.017 9 N -0.832 5.832 10 S 2.786 3.214 11 O -0.955 6.955 12 O -0.949 6.949 13 C -0.790 4.790 14 C -0.041 4.041 15 C -0.162 4.162 16 C 0.032 3.968 17 C -0.031 4.031 18 C -0.558 4.558 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.532 5.532 22 Si 0.706 3.294 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.190 1.190 26 C -0.163 4.163 27 C -0.048 4.048 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.134 0.866 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.148 0.852 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 18.951 3.156 -16.226 25.148 hybrid contribution -0.907 1.396 1.132 2.013 sum 18.044 4.552 -15.094 23.962 Atomic orbital electron populations 1.23476 0.94028 1.07437 1.05048 1.21718 0.94697 0.97810 0.84416 0.89010 1.22727 0.81392 1.00249 0.97653 1.86259 1.17086 1.78608 1.48640 1.22207 0.94401 0.95310 0.88475 1.22458 0.98866 1.01580 0.96921 1.21863 0.82092 1.02590 0.95142 1.57506 1.30933 1.56568 1.38151 1.01887 0.73135 0.73015 0.73395 1.93525 1.65788 1.67357 1.68859 1.93473 1.72132 1.75637 1.53691 1.30365 1.14232 1.24230 1.10211 1.20751 0.99037 0.92967 0.91323 1.21216 0.94047 1.00855 1.00088 1.20704 0.93227 0.89157 0.93749 1.18986 0.93353 0.96706 0.94053 1.20816 1.14896 0.94014 1.26113 0.90662 1.24985 0.95239 0.97549 0.95238 1.69886 1.20064 1.33211 1.29995 0.86788 0.79013 0.85544 0.78067 1.20017 1.21048 1.18951 1.21233 0.99610 1.01657 0.93810 1.21025 0.91329 0.92605 0.99827 0.90000 0.89749 0.86645 0.92745 0.87573 0.93100 0.89024 0.89489 0.90086 0.91147 0.88367 0.85243 0.85221 0.94813 0.95235 0.92341 0.85191 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -2.34 6.85 37.16 0.25 -2.08 16 2 C 0.12 1.14 2.64 -67.72 -0.18 0.96 16 3 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 4 C 0.06 0.56 6.07 38.11 0.23 0.79 16 5 O -0.39 -3.83 9.86 -26.53 -0.26 -4.10 16 6 C 0.07 0.61 6.38 36.42 0.23 0.84 16 7 C -0.16 -1.12 5.79 -26.98 -0.16 -1.28 16 8 C 0.11 0.94 6.34 -3.00 -0.02 0.92 16 9 N -0.99 -10.52 2.43 -105.94 -0.26 -10.77 16 10 S 2.69 37.24 5.10 -107.50 -0.55 36.69 16 11 O -0.96 -15.31 15.57 -57.17 -0.89 -16.20 16 12 O -0.96 -14.48 13.14 -57.17 -0.75 -15.23 16 13 C -0.70 -10.78 5.57 -39.59 -0.22 -11.00 16 14 C -0.02 -0.34 9.52 -39.59 -0.38 -0.72 16 15 C -0.14 -2.57 9.70 -39.58 -0.38 -2.95 16 16 C 0.03 0.63 5.07 -104.63 -0.53 0.10 16 17 C 0.01 0.14 4.17 -29.04 -0.12 0.02 16 18 C -0.52 -14.23 9.65 -34.44 -0.33 -14.57 16 19 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 20 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 21 N -0.89 -26.70 13.96 55.43 0.77 -25.92 16 22 Si 0.88 20.50 27.47 -169.99 -4.67 15.83 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 26 C -0.14 -2.55 9.70 -39.58 -0.38 -2.93 16 27 C -0.03 -0.45 7.09 -39.58 -0.28 -0.73 16 28 H 0.08 0.85 4.75 -51.93 -0.25 0.61 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.12 1.29 4.46 -51.93 -0.23 1.05 16 31 H 0.05 0.58 7.42 -51.93 -0.39 0.20 16 32 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.48 7.41 -51.93 -0.38 0.09 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.57 8.01 -51.93 -0.42 0.16 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.89 6.62 -51.93 -0.34 0.54 16 39 H 0.13 1.77 7.61 -52.48 -0.40 1.37 16 40 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 41 H 0.03 0.74 7.14 -51.93 -0.37 0.37 16 42 H 0.03 0.64 7.51 -51.93 -0.39 0.25 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.13 2.14 8.06 -52.49 -0.42 1.71 16 45 H 0.14 1.81 5.29 -52.49 -0.28 1.54 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -32.83 355.75 -10.02 -42.85 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.41 Total: 2.20 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: -2.36 Total: -30.71 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.52 Total: -36.70 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -1.90 Total: -35.52 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Atomic # 16 Polarization: 37.24 SS G_CDS: -0.55 Total: 36.69 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.83 -10.02 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885069708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.281 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds