Wall clock time and date at job start Tue Mar 31 2020 23:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.45884 * 2 1 4 4 C 1.54807 * 109.45842 * 240.03709 * 2 1 3 5 5 O 1.38014 * 109.48214 * 172.09277 * 4 2 1 6 6 C 1.42159 * 119.43743 * 63.42396 * 5 4 2 7 7 C 1.51535 * 108.76744 * 272.78600 * 6 5 4 8 8 C 1.53943 * 109.72920 * 91.29127 * 7 6 5 9 9 N 1.45114 * 109.46212 * 119.97643 * 2 1 3 10 10 S 1.65609 * 118.75708 * 29.30901 * 9 2 1 11 11 O 1.42097 * 106.40114 * 161.65743 * 10 9 2 12 12 O 1.42104 * 106.39879 * 28.73330 * 10 9 2 13 13 C 1.76206 * 107.21595 * 275.19774 * 10 9 2 14 14 C 1.38227 * 119.99644 * 269.71971 * 13 10 9 15 15 C 1.38238 * 119.99550 * 179.76586 * 14 13 10 16 16 C 1.38235 * 120.00080 * 0.51322 * 15 14 13 17 17 C 1.50704 * 119.99922 * 179.71864 * 16 15 14 18 18 C 1.50695 * 109.47481 * 270.02529 * 17 16 15 19 19 H 1.08002 * 119.99779 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00187 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99789 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99651 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46960 * 90.00293 * 22 20 18 24 24 H 1.48498 * 109.46963 * 209.99992 * 22 20 18 25 25 H 1.48497 * 109.47390 * 330.00357 * 22 20 18 26 26 C 1.38227 * 119.99885 * 359.74381 * 16 15 14 27 27 C 1.38232 * 119.99737 * 89.99794 * 13 10 9 28 28 H 1.09005 * 109.46964 * 292.19094 * 1 2 3 29 29 H 1.09006 * 109.46882 * 52.18763 * 1 2 3 30 30 H 1.09001 * 109.47214 * 172.18685 * 1 2 3 31 31 H 1.09002 * 109.46635 * 292.09242 * 4 2 1 32 32 H 1.09000 * 109.47295 * 52.08769 * 4 2 1 33 33 H 1.09001 * 109.58754 * 32.57174 * 6 5 4 34 34 H 1.08998 * 109.59110 * 152.99984 * 6 5 4 35 35 H 1.08997 * 109.45121 * 211.43022 * 7 6 5 36 36 H 1.09002 * 109.45212 * 331.38451 * 7 6 5 37 37 H 1.09000 * 109.36794 * 199.90766 * 8 7 6 38 38 H 1.09001 * 109.17798 * 80.58245 * 8 7 6 39 39 H 1.08004 * 120.00372 * 0.02562 * 14 13 10 40 40 H 1.08008 * 120.00000 * 180.23140 * 15 14 13 41 41 H 1.09004 * 109.46901 * 30.02711 * 17 16 15 42 42 H 1.08998 * 109.46818 * 150.01830 * 17 16 15 43 43 H 0.97001 * 119.99586 * 179.97438 * 21 20 18 44 44 H 1.08001 * 119.99888 * 179.97438 * 26 16 15 45 45 H 1.07994 * 120.00633 * 0.02562 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0457 -0.7290 -1.2646 5 8 3.4142 -0.5763 -1.3580 6 6 4.2492 -1.1254 -0.3470 7 6 4.3928 -0.1119 0.7704 8 6 3.2976 -0.3446 1.8270 9 7 2.0135 -0.6836 1.1852 10 16 1.0853 -1.8854 1.8462 11 8 1.9482 -2.6456 2.6809 12 8 0.3410 -2.4517 0.7764 13 6 -0.0855 -1.1131 2.9128 14 6 0.2229 -0.9082 4.2446 15 6 -0.6938 -0.2980 5.0803 16 6 -1.9228 0.0978 4.5865 17 6 -2.9245 0.7574 5.4991 18 6 -3.7989 -0.2955 6.1299 19 1 -3.6450 -1.3380 5.8933 20 6 -4.7961 0.0722 7.0082 21 7 -5.5595 -0.8466 7.5582 22 14 -5.0627 1.8753 7.4167 23 1 -6.0333 2.4618 6.4579 24 1 -5.5962 1.9964 8.7973 25 1 -3.7709 2.6012 7.3197 26 6 -2.2331 -0.1119 3.2560 27 6 -1.3144 -0.7173 2.4190 28 1 -0.3633 0.3882 0.9516 29 1 -0.3633 0.6301 -0.8119 30 1 -0.3634 -1.0181 -0.1397 31 1 1.8023 -1.7894 -1.1973 32 1 1.5714 -0.3028 -2.1485 33 1 3.7987 -2.0381 0.0431 34 1 5.2304 -1.3497 -0.7652 35 1 5.3734 -0.2192 1.2339 36 1 4.2919 0.8941 0.3631 37 1 3.1723 0.5595 2.4228 38 1 3.5985 -1.1637 2.4801 39 1 1.1815 -1.2212 4.6314 40 1 -0.4515 -0.1345 6.1201 41 1 -2.3982 1.3077 6.2790 42 1 -3.5427 1.4457 4.9228 43 1 -6.2608 -0.5880 8.1764 44 1 -3.1935 0.1970 2.8703 45 1 -1.5572 -0.8818 1.3796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885069708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:28 Heat of formation + Delta-G solvation = -99.693438 kcal Electronic energy + Delta-G solvation = -28450.142720 eV Core-core repulsion = 24559.370022 eV Total energy + Delta-G solvation = -3890.772698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.71186 -40.33157 -38.69130 -37.13993 -36.88753 -35.59474 -34.58989 -33.58493 -32.11678 -30.53074 -29.75936 -27.91522 -26.16946 -25.29333 -23.79205 -23.05365 -22.41206 -22.02293 -19.91742 -19.04851 -18.99879 -18.24770 -17.90502 -17.42339 -17.00491 -16.71715 -16.66972 -16.03644 -15.88827 -15.60140 -15.40984 -14.83222 -14.69951 -14.48327 -14.37191 -14.27028 -13.95845 -13.66710 -13.56746 -13.52403 -13.46942 -13.31147 -12.98062 -12.74475 -12.56739 -12.56005 -12.31284 -12.07966 -12.03744 -11.95453 -11.72610 -11.56414 -11.51382 -11.38636 -10.84166 -10.61284 -10.05387 -9.97913 -9.80709 -8.35088 -6.42586 -0.73305 -0.12113 0.35089 1.35221 1.37045 1.48434 1.83243 2.31360 2.47712 2.67373 2.85828 2.99366 3.17466 3.56440 3.77154 3.80334 3.90374 3.94562 4.05026 4.12209 4.17613 4.27531 4.41117 4.42790 4.43508 4.59211 4.67210 4.72682 4.73711 4.75062 4.81532 4.87383 4.97196 4.97898 5.05310 5.06476 5.13348 5.14521 5.25023 5.25099 5.43578 5.47607 5.67222 5.74685 5.90174 6.17348 6.64002 6.64054 7.21467 8.81436 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025164 B = 0.002867 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.452889 B = 9763.521774 C = 9852.588443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.119 3.881 3 H 0.111 0.889 4 C 0.057 3.943 5 O -0.396 6.396 6 C 0.063 3.937 7 C -0.151 4.151 8 C 0.097 3.903 9 N -0.985 5.985 10 S 2.705 3.295 11 O -0.986 6.986 12 O -0.973 6.973 13 C -0.701 4.701 14 C -0.023 4.023 15 C -0.155 4.155 16 C -0.001 4.001 17 C 0.012 3.988 18 C -0.527 4.527 19 H 0.026 0.974 20 C 0.009 3.991 21 N -0.947 5.947 22 Si 0.954 3.046 23 H -0.263 1.263 24 H -0.284 1.284 25 H -0.242 1.242 26 C -0.155 4.155 27 C -0.024 4.024 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.036 0.964 32 H 0.127 0.873 33 H 0.035 0.965 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.152 0.848 40 H 0.134 0.866 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.269 0.731 44 H 0.137 0.863 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.870 6.320 -17.533 27.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C 0.013 3.987 3 H 0.128 0.872 4 C -0.022 4.022 5 O -0.315 6.315 6 C -0.013 4.013 7 C -0.190 4.190 8 C -0.027 4.027 9 N -0.825 5.825 10 S 2.799 3.201 11 O -0.976 6.976 12 O -0.963 6.963 13 C -0.788 4.788 14 C -0.042 4.042 15 C -0.173 4.173 16 C -0.001 4.001 17 C -0.025 4.025 18 C -0.565 4.565 19 H 0.044 0.956 20 C -0.188 4.188 21 N -0.587 5.587 22 Si 0.776 3.224 23 H -0.188 1.188 24 H -0.210 1.210 25 H -0.165 1.165 26 C -0.173 4.173 27 C -0.043 4.043 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.055 0.945 32 H 0.144 0.856 33 H 0.054 0.946 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.170 0.830 40 H 0.152 0.848 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.154 0.846 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 20.914 5.502 -17.704 27.948 hybrid contribution -1.396 0.537 1.467 2.095 sum 19.518 6.039 -16.238 26.098 Atomic orbital electron populations 1.23463 0.94229 1.06945 1.05630 1.21887 0.94595 0.98510 0.83717 0.87156 1.22791 0.81535 0.99372 0.98465 1.86255 1.17206 1.78673 1.49333 1.22423 0.94922 0.95095 0.88904 1.22436 0.99303 1.01294 0.95968 1.22148 0.81553 1.03106 0.95869 1.57345 1.30919 1.56080 1.38120 1.01445 0.72675 0.73250 0.72763 1.93495 1.66038 1.68450 1.69621 1.93468 1.72713 1.76484 1.53642 1.30796 1.14707 1.22793 1.10497 1.21003 0.99548 0.92254 0.91392 1.21346 0.94013 1.01265 1.00716 1.20597 0.93704 0.91388 0.94405 1.18827 0.93426 0.95611 0.94645 1.21061 1.15886 0.93186 1.26349 0.95565 1.26011 0.94772 1.03055 0.94987 1.70056 1.21243 1.36098 1.31318 0.85608 0.80046 0.78945 0.77782 1.18798 1.20985 1.16489 1.21381 1.00419 1.02089 0.93461 1.21287 0.90850 0.91492 1.00675 0.90773 0.87197 0.88171 0.94536 0.85570 0.94615 0.87146 0.87069 0.89523 0.89557 0.88881 0.83046 0.84789 0.94111 0.94111 0.92185 0.84558 0.82043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.17 6.85 71.98 0.49 -3.68 16 2 C 0.12 1.95 2.64 45.87 0.12 2.07 16 3 H 0.11 1.46 8.11 -2.39 -0.02 1.44 16 4 C 0.06 0.96 6.07 72.60 0.44 1.40 16 5 O -0.40 -6.91 9.86 -117.85 -1.16 -8.07 16 6 C 0.06 0.91 6.38 71.50 0.46 1.36 16 7 C -0.15 -1.67 5.79 30.43 0.18 -1.49 16 8 C 0.10 1.44 6.34 86.51 0.55 1.99 16 9 N -0.98 -18.87 2.43 -489.08 -1.19 -20.06 16 10 S 2.71 71.89 5.10 -56.49 -0.29 71.60 16 11 O -0.99 -30.40 15.57 -128.00 -1.99 -32.40 16 12 O -0.97 -28.62 13.14 -128.00 -1.68 -30.30 16 13 C -0.70 -20.86 5.57 22.27 0.12 -20.74 16 14 C -0.02 -0.71 9.52 22.27 0.21 -0.50 16 15 C -0.15 -5.53 9.70 22.27 0.22 -5.32 16 16 C 0.00 -0.02 5.07 -19.87 -0.10 -0.12 16 17 C 0.01 0.54 4.17 29.10 0.12 0.66 16 18 C -0.53 -29.77 9.65 25.60 0.25 -29.52 16 19 H 0.03 1.68 7.98 -2.91 -0.02 1.65 16 20 C 0.01 0.53 5.47 84.66 0.46 0.99 16 21 N -0.95 -58.57 13.96 21.45 0.30 -58.27 16 22 Si 0.95 42.15 27.47 68.60 1.88 44.04 16 23 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 25 H -0.24 -9.69 6.54 99.48 0.65 -9.04 16 26 C -0.15 -5.44 9.70 22.27 0.22 -5.22 16 27 C -0.02 -0.73 7.09 22.27 0.16 -0.58 16 28 H 0.07 1.39 4.75 -2.38 -0.01 1.38 16 29 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.10 2.07 4.46 -2.39 -0.01 2.06 16 31 H 0.04 0.74 7.42 -2.39 -0.02 0.73 16 32 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.04 0.62 7.41 -2.39 -0.02 0.61 16 34 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.09 0.91 8.01 -2.39 -0.02 0.89 16 37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.50 6.62 -2.39 -0.02 1.49 16 39 H 0.15 3.94 7.61 -2.91 -0.02 3.92 16 40 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 41 H 0.04 1.75 7.14 -2.39 -0.02 1.74 16 42 H 0.04 1.72 7.51 -2.39 -0.02 1.70 16 43 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 45 H 0.16 4.04 5.29 -2.91 -0.02 4.02 16 Total: -1.00 -73.13 355.75 0.70 -72.43 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.94 Total: 19.71 kcal Atomic # 6 Polarization: -62.57 SS G_CDS: 3.89 Total: -58.68 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -0.89 Total: -78.32 kcal Atomic # 8 Polarization: -65.94 SS G_CDS: -4.84 Total: -70.77 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.88 Total: 44.04 kcal Atomic # 16 Polarization: 71.89 SS G_CDS: -0.29 Total: 71.60 kcal Total: -73.13 0.70 -72.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885069708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.266 kcal (2) G-P(sol) polarization free energy of solvation -73.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds