Wall clock time and date at job start Tue Mar 31 2020 23:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 108.01337 * 2 1 4 4 C 1.54907 * 108.52938 * 117.26963 * 2 1 3 5 5 O 1.44965 * 110.82507 * 162.99324 * 4 2 1 6 6 C 1.39721 * 115.12327 * 39.08419 * 5 4 2 7 7 C 1.52688 * 106.08981 * 261.77264 * 6 5 4 8 8 C 1.46923 * 113.61582 * 88.28163 * 7 6 5 9 9 N 1.43753 * 108.27690 * 242.95237 * 2 1 3 10 10 S 1.65602 * 120.42840 * 330.67198 * 9 2 1 11 11 O 1.42103 * 106.40356 * 330.46523 * 10 9 2 12 12 O 1.42101 * 106.40203 * 197.54887 * 10 9 2 13 13 C 1.76202 * 107.22164 * 84.00720 * 10 9 2 14 14 C 1.38224 * 120.00195 * 89.99519 * 13 10 9 15 15 C 1.38239 * 120.00340 * 180.27546 * 14 13 10 16 16 C 1.38234 * 119.99454 * 359.47839 * 15 14 13 17 17 C 1.50697 * 119.99981 * 180.27856 * 16 15 14 18 18 C 1.50703 * 109.47129 * 270.26896 * 17 16 15 19 19 H 1.08002 * 119.99642 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00529 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00507 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99749 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47381 * 89.99136 * 22 20 18 24 24 H 1.48497 * 109.47005 * 209.99787 * 22 20 18 25 25 H 1.48504 * 109.47036 * 329.99545 * 22 20 18 26 26 C 1.38236 * 120.00142 * 0.54572 * 16 15 14 27 27 C 1.38233 * 119.99546 * 270.02201 * 13 10 9 28 28 H 1.09000 * 109.47154 * 184.16310 * 1 2 3 29 29 H 1.09002 * 109.46765 * 304.16283 * 1 2 3 30 30 H 1.08998 * 109.47400 * 64.15877 * 1 2 3 31 31 H 1.09004 * 109.24759 * 42.61113 * 4 2 1 32 32 H 1.08999 * 109.09985 * 283.28340 * 4 2 1 33 33 H 1.08997 * 110.11832 * 142.63309 * 6 5 4 34 34 H 1.08997 * 110.22317 * 20.97234 * 6 5 4 35 35 H 1.09001 * 108.65292 * 327.21491 * 7 6 5 36 36 H 1.09003 * 108.54294 * 209.27526 * 7 6 5 37 37 H 1.08999 * 109.87009 * 182.55369 * 8 7 6 38 38 H 1.09003 * 109.86808 * 61.50737 * 8 7 6 39 39 H 1.08006 * 120.00044 * 0.02562 * 14 13 10 40 40 H 1.07998 * 120.00381 * 179.72802 * 15 14 13 41 41 H 1.09006 * 109.47314 * 30.26880 * 17 16 15 42 42 H 1.09005 * 109.47582 * 150.27110 * 17 16 15 43 43 H 0.96996 * 119.99984 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.00162 * 179.72782 * 26 16 15 45 45 H 1.07996 * 120.00410 * 0.02562 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8671 1.0366 0.0000 4 6 2.0223 -0.6730 1.3055 5 8 3.4146 -1.0604 1.1923 6 6 4.2304 -0.1506 0.5149 7 6 4.3533 -0.6747 -0.9139 8 6 3.2906 -0.1975 -1.8093 9 7 1.9809 -0.6207 -1.2157 10 16 1.0618 -1.7833 -1.9547 11 8 0.3336 -2.4350 -0.9230 12 8 1.9267 -2.4704 -2.8487 13 6 -0.1274 -0.9512 -2.9538 14 6 0.1691 -0.6417 -4.2679 15 6 -0.7617 0.0161 -5.0500 16 6 -1.9932 0.3548 -4.5211 17 6 -3.0103 1.0664 -5.3756 18 6 -2.8208 2.5559 -5.2467 19 1 -2.0414 2.9480 -4.6101 20 6 -3.6416 3.4181 -5.9423 21 7 -3.4765 4.7180 -5.8295 22 14 -4.9891 2.7399 -7.0440 23 1 -6.2385 2.5808 -6.2572 24 1 -5.2286 3.6795 -8.1687 25 1 -4.5715 1.4202 -7.5818 26 6 -2.2895 0.0457 -3.2068 27 6 -1.3567 -0.6076 -2.4231 28 1 -0.3633 -1.0249 0.0746 29 1 -0.3633 0.5771 0.8504 30 1 -0.3634 0.4479 -0.9249 31 1 1.4184 -1.5586 1.5031 32 1 1.9113 0.0287 2.1323 33 1 5.2133 -0.1068 0.9841 34 1 3.7717 0.8382 0.5135 35 1 4.3255 -1.7640 -0.8893 36 1 5.3161 -0.3603 -1.3168 37 1 3.4109 -0.6425 -2.7970 38 1 3.3296 0.8892 -1.8843 39 1 1.1296 -0.9102 -4.6824 40 1 -0.5284 0.2619 -6.0755 41 1 -2.8796 0.7722 -6.4170 42 1 -4.0139 0.7980 -5.0454 43 1 -4.0542 5.3245 -6.3186 44 1 -3.2499 0.3143 -2.7922 45 1 -1.5881 -0.8486 -1.3962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885069709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:33 Heat of formation + Delta-G solvation = -76.837558 kcal Electronic energy + Delta-G solvation = -28517.755116 eV Core-core repulsion = 24627.973523 eV Total energy + Delta-G solvation = -3889.781592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.85546 -38.98357 -37.47887 -36.10634 -35.76780 -34.05617 -33.66815 -31.80514 -30.80211 -29.59713 -28.06552 -27.09800 -25.47419 -23.53358 -22.51122 -22.14949 -21.35302 -20.74445 -18.78592 -17.95273 -17.19227 -17.09329 -16.95445 -16.27135 -16.04632 -15.46407 -15.16572 -14.85589 -14.40798 -14.36706 -14.10486 -13.94068 -13.60686 -13.40254 -13.28650 -12.86886 -12.78004 -12.73981 -12.44769 -12.07956 -12.06630 -11.87936 -11.84642 -11.67552 -11.63642 -11.37098 -10.99352 -10.93964 -10.83882 -10.55821 -10.45112 -10.31985 -10.10190 -9.81718 -9.58139 -9.18939 -8.74335 -8.63772 -8.44909 -6.23326 -4.24749 0.41730 1.23407 1.69317 2.86166 3.17712 3.26507 3.27816 3.63583 3.74925 3.97312 4.27293 4.28530 4.35060 4.50439 4.62215 4.79579 4.93094 4.99193 5.05359 5.12410 5.13764 5.16278 5.21713 5.34225 5.39954 5.48269 5.54261 5.57998 5.70212 5.72321 5.76886 5.79230 5.87693 5.98807 6.12310 6.18941 6.21227 6.38016 6.49862 6.66764 6.67472 6.79265 7.11140 7.25837 7.27144 7.49531 8.29525 8.79136 9.35494 10.89070 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020346 B = 0.003063 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.831742 B = 9138.836047 C = 9384.581989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.128 3.872 3 H 0.082 0.918 4 C 0.045 3.955 5 O -0.382 6.382 6 C 0.066 3.934 7 C -0.173 4.173 8 C 0.124 3.876 9 N -0.988 5.988 10 S 2.700 3.300 11 O -0.961 6.961 12 O -0.964 6.964 13 C -0.703 4.703 14 C -0.021 4.021 15 C -0.143 4.143 16 C 0.032 3.968 17 C 0.005 3.995 18 C -0.519 4.519 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.895 5.895 22 Si 0.878 3.122 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.264 1.264 26 C -0.144 4.144 27 C -0.028 4.028 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.266 0.734 44 H 0.130 0.870 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.817 -9.222 11.718 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C 0.020 3.980 3 H 0.100 0.900 4 C -0.033 4.033 5 O -0.300 6.300 6 C -0.011 4.011 7 C -0.212 4.212 8 C 0.000 4.000 9 N -0.825 5.825 10 S 2.795 3.205 11 O -0.951 6.951 12 O -0.955 6.955 13 C -0.792 4.792 14 C -0.041 4.041 15 C -0.162 4.162 16 C 0.031 3.969 17 C -0.032 4.032 18 C -0.557 4.557 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.533 5.533 22 Si 0.705 3.295 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.189 1.189 26 C -0.163 4.163 27 C -0.048 4.048 28 H 0.131 0.869 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.148 0.852 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.934 -10.101 11.820 20.224 hybrid contribution -1.217 0.951 -1.074 1.881 sum 11.717 -9.150 10.746 18.344 Atomic orbital electron populations 1.23518 0.94030 1.07159 1.05415 1.21021 0.95192 0.97453 0.84317 0.89967 1.24022 0.82244 1.01392 0.95656 1.87657 1.18849 1.46226 1.77292 1.22011 0.94961 0.92859 0.91285 1.21551 0.99298 1.03546 0.96794 1.20994 0.80718 1.00847 0.97413 1.57778 1.31880 1.59751 1.33133 1.01629 0.72952 0.72867 0.73098 1.93465 1.72937 1.72439 1.56249 1.93525 1.65697 1.70401 1.65856 1.30459 1.14370 1.24552 1.09802 1.20750 0.98875 0.92924 0.91518 1.21211 0.93877 1.00305 1.00802 1.20692 0.94679 0.87476 0.94039 1.18995 0.92946 0.96568 0.94706 1.20796 1.18565 0.87140 1.29177 0.90734 1.24976 0.97154 0.94680 0.96177 1.69880 1.39187 1.01919 1.42278 0.86798 0.82515 0.79387 0.80792 1.20006 1.21054 1.18899 1.21230 1.00253 1.00602 0.94247 1.21007 0.91331 0.93045 0.99373 0.86932 0.89763 0.89707 0.88173 0.91514 0.89796 0.92461 0.90187 0.90249 0.88266 0.90303 0.85250 0.85248 0.94775 0.95202 0.92359 0.85233 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -2.54 6.71 37.16 0.25 -2.29 16 2 C 0.13 1.29 2.18 -68.38 -0.15 1.14 16 3 H 0.08 0.70 7.08 -51.93 -0.37 0.33 16 4 C 0.04 0.44 6.64 38.16 0.25 0.69 16 5 O -0.38 -4.20 10.19 -32.17 -0.33 -4.53 16 6 C 0.07 0.55 6.45 37.00 0.24 0.79 16 7 C -0.17 -1.49 5.41 -29.80 -0.16 -1.65 16 8 C 0.12 1.16 6.03 -5.06 -0.03 1.13 16 9 N -0.99 -11.26 2.95 -108.59 -0.32 -11.58 16 10 S 2.70 38.23 5.14 -107.50 -0.55 37.67 16 11 O -0.96 -14.77 14.06 -57.17 -0.80 -15.58 16 12 O -0.96 -15.53 15.89 -57.17 -0.91 -16.44 16 13 C -0.70 -10.77 5.51 -39.59 -0.22 -10.99 16 14 C -0.02 -0.34 9.52 -39.59 -0.38 -0.71 16 15 C -0.14 -2.55 9.70 -39.58 -0.38 -2.93 16 16 C 0.03 0.62 5.07 -104.63 -0.53 0.09 16 17 C 0.00 0.11 4.17 -29.04 -0.12 -0.01 16 18 C -0.52 -13.91 9.65 -34.44 -0.33 -14.24 16 19 H 0.07 2.19 7.98 -52.49 -0.42 1.77 16 20 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 21 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 22 Si 0.88 20.40 27.47 -169.99 -4.67 15.73 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 26 C -0.14 -2.54 9.70 -39.58 -0.38 -2.92 16 27 C -0.03 -0.44 7.06 -39.58 -0.28 -0.72 16 28 H 0.11 1.30 4.36 -51.93 -0.23 1.07 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.99 4.84 -51.93 -0.25 0.74 16 31 H 0.10 1.04 7.97 -51.93 -0.41 0.63 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.41 6.36 -51.93 -0.33 0.08 16 35 H 0.08 0.84 7.96 -51.93 -0.41 0.43 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.94 7.09 -51.93 -0.37 0.57 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.13 1.75 7.62 -52.48 -0.40 1.35 16 40 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 41 H 0.03 0.75 7.14 -51.93 -0.37 0.38 16 42 H 0.03 0.65 7.51 -51.93 -0.39 0.26 16 43 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 45 H 0.14 1.79 5.36 -52.49 -0.28 1.51 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -32.72 356.10 -10.12 -42.84 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.36 Total: 2.73 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: -2.32 Total: -30.73 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.45 Total: -37.07 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -2.04 Total: -36.54 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.73 kcal Atomic # 16 Polarization: 38.23 SS G_CDS: -0.55 Total: 37.67 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.72 -10.12 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885069709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.996 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds