Wall clock time and date at job start Tue Mar 31 2020 23:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 108.01337 * 2 1 4 4 C 1.54907 * 108.52938 * 117.26963 * 2 1 3 5 5 O 1.44965 * 110.82507 * 162.99324 * 4 2 1 6 6 C 1.39721 * 115.12327 * 39.08419 * 5 4 2 7 7 C 1.52688 * 106.08981 * 261.77264 * 6 5 4 8 8 C 1.46923 * 113.61582 * 88.28163 * 7 6 5 9 9 N 1.43753 * 108.27690 * 242.95237 * 2 1 3 10 10 S 1.65602 * 120.42840 * 330.67198 * 9 2 1 11 11 O 1.42103 * 106.40356 * 330.46523 * 10 9 2 12 12 O 1.42101 * 106.40203 * 197.54887 * 10 9 2 13 13 C 1.76202 * 107.22164 * 84.00720 * 10 9 2 14 14 C 1.38224 * 120.00195 * 89.99519 * 13 10 9 15 15 C 1.38239 * 120.00340 * 180.27546 * 14 13 10 16 16 C 1.38234 * 119.99454 * 359.47839 * 15 14 13 17 17 C 1.50697 * 119.99981 * 180.27856 * 16 15 14 18 18 C 1.50703 * 109.47129 * 270.26896 * 17 16 15 19 19 H 1.08002 * 119.99642 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00529 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00507 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99749 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47381 * 89.99136 * 22 20 18 24 24 H 1.48497 * 109.47005 * 209.99787 * 22 20 18 25 25 H 1.48504 * 109.47036 * 329.99545 * 22 20 18 26 26 C 1.38236 * 120.00142 * 0.54572 * 16 15 14 27 27 C 1.38233 * 119.99546 * 270.02201 * 13 10 9 28 28 H 1.09000 * 109.47154 * 184.16310 * 1 2 3 29 29 H 1.09002 * 109.46765 * 304.16283 * 1 2 3 30 30 H 1.08998 * 109.47400 * 64.15877 * 1 2 3 31 31 H 1.09004 * 109.24759 * 42.61113 * 4 2 1 32 32 H 1.08999 * 109.09985 * 283.28340 * 4 2 1 33 33 H 1.08997 * 110.11832 * 142.63309 * 6 5 4 34 34 H 1.08997 * 110.22317 * 20.97234 * 6 5 4 35 35 H 1.09001 * 108.65292 * 327.21491 * 7 6 5 36 36 H 1.09003 * 108.54294 * 209.27526 * 7 6 5 37 37 H 1.08999 * 109.87009 * 182.55369 * 8 7 6 38 38 H 1.09003 * 109.86808 * 61.50737 * 8 7 6 39 39 H 1.08006 * 120.00044 * 0.02562 * 14 13 10 40 40 H 1.07998 * 120.00381 * 179.72802 * 15 14 13 41 41 H 1.09006 * 109.47314 * 30.26880 * 17 16 15 42 42 H 1.09005 * 109.47582 * 150.27110 * 17 16 15 43 43 H 0.96996 * 119.99984 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.00162 * 179.72782 * 26 16 15 45 45 H 1.07996 * 120.00410 * 0.02562 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8671 1.0366 0.0000 4 6 2.0223 -0.6730 1.3055 5 8 3.4146 -1.0604 1.1923 6 6 4.2304 -0.1506 0.5149 7 6 4.3533 -0.6747 -0.9139 8 6 3.2906 -0.1975 -1.8093 9 7 1.9809 -0.6207 -1.2157 10 16 1.0618 -1.7833 -1.9547 11 8 0.3336 -2.4350 -0.9230 12 8 1.9267 -2.4704 -2.8487 13 6 -0.1274 -0.9512 -2.9538 14 6 0.1691 -0.6417 -4.2679 15 6 -0.7617 0.0161 -5.0500 16 6 -1.9932 0.3548 -4.5211 17 6 -3.0103 1.0664 -5.3756 18 6 -2.8208 2.5559 -5.2467 19 1 -2.0414 2.9480 -4.6101 20 6 -3.6416 3.4181 -5.9423 21 7 -3.4765 4.7180 -5.8295 22 14 -4.9891 2.7399 -7.0440 23 1 -6.2385 2.5808 -6.2572 24 1 -5.2286 3.6795 -8.1687 25 1 -4.5715 1.4202 -7.5818 26 6 -2.2895 0.0457 -3.2068 27 6 -1.3567 -0.6076 -2.4231 28 1 -0.3633 -1.0249 0.0746 29 1 -0.3633 0.5771 0.8504 30 1 -0.3634 0.4479 -0.9249 31 1 1.4184 -1.5586 1.5031 32 1 1.9113 0.0287 2.1323 33 1 5.2133 -0.1068 0.9841 34 1 3.7717 0.8382 0.5135 35 1 4.3255 -1.7640 -0.8893 36 1 5.3161 -0.3603 -1.3168 37 1 3.4109 -0.6425 -2.7970 38 1 3.3296 0.8892 -1.8843 39 1 1.1296 -0.9102 -4.6824 40 1 -0.5284 0.2619 -6.0755 41 1 -2.8796 0.7722 -6.4170 42 1 -4.0139 0.7980 -5.0454 43 1 -4.0542 5.3245 -6.3186 44 1 -3.2499 0.3143 -2.7922 45 1 -1.5881 -0.8486 -1.3962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885069709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:32 Heat of formation + Delta-G solvation = -98.741937 kcal Electronic energy + Delta-G solvation = -28518.704961 eV Core-core repulsion = 24627.973523 eV Total energy + Delta-G solvation = -3890.731437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.62761 -40.30263 -38.63121 -37.05584 -36.82744 -35.58269 -34.72140 -33.56446 -32.08688 -30.43707 -29.74207 -27.86030 -26.24034 -25.27227 -23.75785 -23.03618 -22.29542 -22.06855 -19.92960 -19.02887 -19.00458 -18.15663 -17.94129 -17.19101 -16.88284 -16.66201 -16.50486 -16.03620 -15.88150 -15.46561 -15.36649 -14.85120 -14.65562 -14.55599 -14.45001 -14.14987 -13.98718 -13.89496 -13.64534 -13.59511 -13.38371 -13.24381 -12.73814 -12.70150 -12.56463 -12.43818 -12.38004 -12.18665 -12.02850 -11.97967 -11.73064 -11.66583 -11.49436 -11.23104 -10.82736 -10.55583 -10.08727 -9.96321 -9.83181 -8.34058 -6.40302 -0.70286 -0.09522 0.37085 1.35506 1.37417 1.48145 1.85451 2.31847 2.52835 2.71157 2.99444 3.00619 3.21838 3.48034 3.73627 3.83653 3.90747 3.95098 4.06109 4.11067 4.24999 4.30169 4.40908 4.44533 4.47022 4.53056 4.65260 4.69119 4.76229 4.81650 4.82069 4.87766 4.93276 4.99458 5.06839 5.09206 5.13556 5.15787 5.26828 5.31146 5.38434 5.48555 5.65820 5.75986 5.91625 6.18900 6.44633 6.65382 7.23573 8.81867 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020346 B = 0.003063 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.831742 B = 9138.836047 C = 9384.581989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.123 3.877 3 H 0.104 0.896 4 C 0.043 3.957 5 O -0.404 6.404 6 C 0.061 3.939 7 C -0.172 4.172 8 C 0.115 3.885 9 N -0.985 5.985 10 S 2.715 3.285 11 O -0.974 6.974 12 O -0.984 6.984 13 C -0.700 4.700 14 C -0.022 4.022 15 C -0.154 4.154 16 C 0.000 4.000 17 C 0.010 3.990 18 C -0.521 4.521 19 H 0.032 0.968 20 C 0.013 3.987 21 N -0.944 5.944 22 Si 0.947 3.053 23 H -0.265 1.265 24 H -0.284 1.284 25 H -0.246 1.246 26 C -0.155 4.155 27 C -0.023 4.023 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.152 0.848 40 H 0.134 0.866 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.269 0.731 44 H 0.136 0.864 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.443 -9.909 12.401 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C 0.016 3.984 3 H 0.122 0.878 4 C -0.034 4.034 5 O -0.323 6.323 6 C -0.016 4.016 7 C -0.211 4.211 8 C -0.008 4.008 9 N -0.824 5.824 10 S 2.808 3.192 11 O -0.964 6.964 12 O -0.975 6.975 13 C -0.788 4.788 14 C -0.041 4.041 15 C -0.173 4.173 16 C -0.001 4.001 17 C -0.027 4.027 18 C -0.559 4.559 19 H 0.051 0.949 20 C -0.185 4.185 21 N -0.584 5.584 22 Si 0.770 3.230 23 H -0.190 1.190 24 H -0.210 1.210 25 H -0.169 1.169 26 C -0.173 4.173 27 C -0.042 4.042 28 H 0.119 0.881 29 H 0.125 0.875 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.170 0.830 40 H 0.152 0.848 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.154 0.846 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 13.555 -10.807 12.495 21.370 hybrid contribution -1.243 1.172 -1.143 2.056 sum 12.312 -9.635 11.353 19.321 Atomic orbital electron populations 1.23500 0.94508 1.06662 1.05709 1.21228 0.94907 0.98474 0.83827 0.87801 1.24076 0.81780 1.01470 0.96112 1.87635 1.19428 1.47556 1.77719 1.22217 0.95518 0.93058 0.90797 1.21542 1.00272 1.02030 0.97247 1.21285 0.79775 1.02286 0.97432 1.57665 1.32029 1.59412 1.33341 1.01165 0.72507 0.72981 0.72567 1.93456 1.73454 1.73263 1.56238 1.93496 1.65963 1.71331 1.66679 1.30824 1.14741 1.23281 1.09913 1.20998 0.99354 0.92141 0.91585 1.21334 0.93759 1.00781 1.01430 1.20581 0.95090 0.89536 0.94855 1.18844 0.94384 0.93840 0.95652 1.21017 1.17083 0.89909 1.27911 0.94926 1.25912 0.99892 0.94793 0.97888 1.70031 1.40859 1.03554 1.43983 0.85702 0.79280 0.79344 0.78647 1.18966 1.20950 1.16914 1.21368 1.01163 1.01005 0.93804 1.21255 0.90823 0.91921 1.00153 0.88053 0.87459 0.91076 0.89449 0.88974 0.88216 0.90965 0.92530 0.87677 0.88550 0.88002 0.83034 0.84824 0.94381 0.94390 0.92228 0.84615 0.82203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.67 6.71 71.98 0.48 -4.18 16 2 C 0.12 2.18 2.18 46.15 0.10 2.28 16 3 H 0.10 1.42 7.08 -2.38 -0.02 1.41 16 4 C 0.04 0.75 6.64 72.63 0.48 1.23 16 5 O -0.40 -8.10 10.19 -138.02 -1.41 -9.51 16 6 C 0.06 0.85 6.45 71.88 0.46 1.32 16 7 C -0.17 -2.58 5.41 28.60 0.15 -2.43 16 8 C 0.11 1.90 6.03 83.83 0.51 2.40 16 9 N -0.99 -20.65 2.95 -497.46 -1.47 -22.11 16 10 S 2.71 73.67 5.14 -56.49 -0.29 73.38 16 11 O -0.97 -28.99 14.06 -128.00 -1.80 -30.79 16 12 O -0.98 -30.70 15.89 -128.00 -2.03 -32.74 16 13 C -0.70 -20.72 5.51 22.27 0.12 -20.59 16 14 C -0.02 -0.66 9.52 22.27 0.21 -0.45 16 15 C -0.15 -5.47 9.70 22.27 0.22 -5.25 16 16 C 0.00 -0.01 5.07 -19.87 -0.10 -0.11 16 17 C 0.01 0.44 4.17 29.10 0.12 0.57 16 18 C -0.52 -28.63 9.65 25.60 0.25 -28.39 16 19 H 0.03 2.00 7.98 -2.91 -0.02 1.98 16 20 C 0.01 0.73 5.47 84.65 0.46 1.19 16 21 N -0.94 -56.90 13.96 21.45 0.30 -56.60 16 22 Si 0.95 41.91 27.47 68.60 1.88 43.80 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.25 -10.04 6.54 99.48 0.65 -9.38 16 26 C -0.15 -5.39 9.70 22.27 0.22 -5.17 16 27 C -0.02 -0.68 7.06 22.27 0.16 -0.52 16 28 H 0.10 2.19 4.36 -2.39 -0.01 2.18 16 29 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.55 4.84 -2.39 -0.01 1.54 16 31 H 0.09 1.71 7.97 -2.39 -0.02 1.69 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 0.78 6.36 -2.39 -0.02 0.77 16 35 H 0.06 1.13 7.96 -2.39 -0.02 1.11 16 36 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.10 1.66 7.09 -2.39 -0.02 1.64 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.15 3.89 7.62 -2.91 -0.02 3.87 16 40 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 41 H 0.04 1.65 7.14 -2.38 -0.02 1.64 16 42 H 0.04 1.62 7.51 -2.38 -0.02 1.60 16 43 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 44 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 45 H 0.16 3.98 5.36 -2.91 -0.02 3.96 16 Total: -1.00 -71.95 356.10 -0.02 -71.97 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.95 Total: 20.73 kcal Atomic # 6 Polarization: -61.96 SS G_CDS: 3.84 Total: -58.12 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -1.17 Total: -78.72 kcal Atomic # 8 Polarization: -67.80 SS G_CDS: -5.24 Total: -73.04 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.88 Total: 43.80 kcal Atomic # 16 Polarization: 73.67 SS G_CDS: -0.29 Total: 73.38 kcal Total: -71.95 -0.02 -71.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885069709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.773 kcal (2) G-P(sol) polarization free energy of solvation -71.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds