Wall clock time and date at job start Tue Mar 31 2020 23:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.43596 * 2 1 4 4 C 1.47690 * 109.43202 * 119.90956 * 2 1 3 5 5 O 1.42565 * 113.65981 * 180.86850 * 4 2 1 6 6 C 1.40522 * 113.54249 * 272.24321 * 5 4 2 7 7 C 1.54289 * 109.86840 * 95.29189 * 6 5 4 8 8 N 1.48184 * 110.69578 * 320.61125 * 7 6 5 9 9 S 1.65593 * 118.51647 * 138.77354 * 8 7 6 10 10 O 1.42098 * 106.40520 * 203.54412 * 9 8 7 11 11 O 1.42097 * 106.40248 * 336.46509 * 9 8 7 12 12 C 1.76198 * 107.21796 * 90.00285 * 9 8 7 13 13 C 1.38238 * 119.99982 * 269.72603 * 12 9 8 14 14 C 1.38235 * 119.99942 * 179.78394 * 13 12 9 15 15 C 1.38235 * 119.99929 * 0.45021 * 14 13 12 16 16 C 1.50700 * 120.00070 * 179.82975 * 15 14 13 17 17 C 1.50702 * 109.47278 * 269.97463 * 16 15 14 18 18 H 1.07998 * 119.99669 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00040 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99884 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99755 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47000 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47139 * 119.99601 * 21 19 17 24 24 H 1.48497 * 109.46820 * 239.99557 * 21 19 17 25 25 C 1.38237 * 119.99848 * 359.80519 * 15 14 13 26 26 C 1.38232 * 120.00147 * 359.97438 * 25 15 14 27 27 C 1.44467 * 122.97238 * 318.77681 * 8 7 6 28 28 H 1.09001 * 109.46801 * 300.09132 * 1 2 3 29 29 H 1.09001 * 109.46998 * 60.08728 * 1 2 3 30 30 H 1.09000 * 109.47050 * 180.09020 * 1 2 3 31 31 H 1.09003 * 108.64662 * 301.94649 * 4 2 1 32 32 H 1.08994 * 108.64494 * 59.78648 * 4 2 1 33 33 H 1.09006 * 109.40556 * 215.41115 * 6 5 4 34 34 H 1.08995 * 109.40803 * 335.24543 * 6 5 4 35 35 H 1.08996 * 109.23992 * 80.92589 * 7 6 5 36 36 H 1.09003 * 109.23488 * 200.30411 * 7 6 5 37 37 H 1.07994 * 120.00075 * 0.02562 * 13 12 9 38 38 H 1.08001 * 120.00221 * 180.27373 * 14 13 12 39 39 H 1.09002 * 109.47263 * 29.97685 * 16 15 14 40 40 H 1.09006 * 109.47109 * 149.97576 * 16 15 14 41 41 H 0.96996 * 119.99643 * 180.02562 * 20 19 17 42 42 H 1.08005 * 120.00035 * 180.02562 * 25 15 14 43 43 H 1.08003 * 120.00135 * 180.02562 * 26 25 15 44 44 H 1.09006 * 109.49381 * 328.98119 * 27 8 7 45 45 H 1.08993 * 109.49497 * 208.88882 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 6 2.0214 -0.6945 1.2073 5 8 3.4430 -0.7298 1.3083 6 6 4.0249 -1.8308 0.6572 7 6 4.4690 -1.4251 -0.7636 8 7 3.4707 -0.5250 -1.3873 9 16 4.0133 0.7718 -2.2626 10 8 2.9589 1.7244 -2.2642 11 8 5.3201 1.0598 -1.7848 12 6 4.2005 0.2341 -3.9300 13 6 5.4067 -0.2899 -4.3560 14 6 5.5522 -0.7159 -5.6630 15 6 4.4944 -0.6094 -6.5465 16 6 4.6542 -1.0702 -7.9724 17 6 5.1473 0.0753 -8.8183 18 1 5.3273 1.0405 -8.3683 19 6 5.3685 -0.1087 -10.1667 20 7 5.1497 -1.2842 -10.7145 21 14 5.9803 1.3111 -11.2152 22 1 6.1471 2.5177 -10.3657 23 1 7.2854 0.9500 -11.8247 24 1 4.9941 1.5945 -12.2886 25 6 3.2899 -0.0805 -6.1219 26 6 3.1430 0.3413 -4.8137 27 6 2.0454 -0.7275 -1.2664 28 1 -0.3633 0.5153 0.8892 29 1 -0.3633 0.5125 -0.8908 30 1 -0.3633 -1.0277 0.0016 31 1 1.6220 -0.1894 2.0868 32 1 1.6472 -1.7181 1.1970 33 1 4.8916 -2.1704 1.2244 34 1 3.2963 -2.6387 0.5908 35 1 5.4290 -0.9122 -0.7071 36 1 4.5766 -2.3207 -1.3756 37 1 6.2342 -0.3701 -3.6667 38 1 6.4932 -1.1294 -5.9946 39 1 5.3747 -1.8873 -8.0116 40 1 3.6927 -1.4152 -8.3526 41 1 5.3057 -1.4137 -11.6631 42 1 2.4633 0.0024 -6.8120 43 1 2.2017 0.7541 -4.4819 44 1 1.8352 -1.7939 -1.1841 45 1 1.5447 -0.3244 -2.1466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885073084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:44 Heat of formation + Delta-G solvation = -99.465498 kcal Electronic energy + Delta-G solvation = -27871.487759 eV Core-core repulsion = 23980.724946 eV Total energy + Delta-G solvation = -3890.762813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.89239 -38.81096 -37.24843 -35.99242 -35.69201 -34.59757 -33.69017 -31.56829 -30.59317 -29.53917 -27.44010 -26.70096 -26.05664 -23.73342 -22.39008 -22.24574 -21.05656 -20.84933 -18.99491 -17.97469 -17.40767 -17.30923 -16.47715 -16.41916 -15.75786 -15.31403 -15.10660 -14.59347 -14.50427 -14.38311 -14.29063 -13.97464 -13.77744 -13.19543 -13.11222 -12.87923 -12.68005 -12.47911 -12.28173 -12.23271 -12.03135 -11.94253 -11.71230 -11.70606 -11.50457 -11.36364 -11.07205 -10.94306 -10.93756 -10.83112 -10.50569 -10.49653 -9.91470 -9.75536 -9.66303 -9.15384 -8.60745 -8.55599 -8.38784 -6.18711 -4.23636 0.46940 1.32177 1.77849 2.92722 3.22298 3.30377 3.35860 3.56163 3.80561 4.07006 4.30445 4.35181 4.37827 4.49666 4.56571 4.76767 4.86658 4.96788 5.01350 5.13363 5.18059 5.21984 5.24063 5.25987 5.27812 5.40922 5.42417 5.50864 5.64112 5.70656 5.77922 5.81204 5.89721 5.92256 6.00035 6.23579 6.31446 6.43578 6.54366 6.82244 6.89023 6.99546 7.27677 7.41688 7.57234 7.76734 8.11806 8.81499 9.41537 10.91387 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.002659 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.703514 B =10527.005741 C =10709.008346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.149 4.149 3 H 0.089 0.911 4 C 0.067 3.933 5 O -0.366 6.366 6 C 0.055 3.945 7 C 0.082 3.918 8 N -0.989 5.989 9 S 2.691 3.309 10 O -0.960 6.960 11 O -0.962 6.962 12 C -0.705 4.705 13 C -0.024 4.024 14 C -0.145 4.145 15 C 0.026 3.974 16 C 0.039 3.961 17 C -0.517 4.517 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.145 4.145 26 C -0.025 4.025 27 C 0.128 3.872 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.264 0.736 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.078 0.922 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.325 -3.816 23.150 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 H 0.107 0.893 4 C -0.009 4.009 5 O -0.283 6.283 6 C -0.024 4.024 7 C -0.043 4.043 8 N -0.826 5.826 9 S 2.785 3.215 10 O -0.951 6.951 11 O -0.952 6.952 12 C -0.794 4.794 13 C -0.043 4.043 14 C -0.164 4.164 15 C 0.026 3.974 16 C 0.002 3.998 17 C -0.555 4.555 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.164 4.164 26 C -0.044 4.044 27 C 0.002 3.998 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.094 0.906 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.097 0.903 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.050 -2.976 23.437 24.654 hybrid contribution 0.183 0.020 -1.608 1.619 sum -6.867 -2.957 21.828 23.073 Atomic orbital electron populations 1.21678 0.93353 1.02070 1.02881 1.21669 0.96903 1.02352 0.96053 0.89261 1.21618 0.81143 1.00146 0.98027 1.87494 1.19891 1.47280 1.73651 1.22814 0.98932 0.88655 0.91973 1.22638 0.92223 0.94802 0.94671 1.57173 1.12244 1.47160 1.65997 1.01894 0.73232 0.72902 0.73485 1.93544 1.56885 1.57383 1.87264 1.93530 1.39209 1.82593 1.79910 1.30436 1.02404 1.22671 1.23881 1.20767 0.94471 0.92411 0.96693 1.21249 0.99696 1.02561 0.92893 1.21115 0.91366 0.87422 0.97544 1.18543 0.98757 0.97277 0.85177 1.21014 1.45251 0.96400 0.92845 0.92227 1.25006 0.95243 0.96002 0.97910 1.69955 1.48413 1.22290 1.12333 0.86424 0.78531 0.82285 0.80195 1.19547 1.20777 1.20786 1.21245 0.98722 1.01150 0.95297 1.20760 0.96438 0.93660 0.93552 1.21301 0.79250 1.01113 0.98167 0.92110 0.91474 0.92447 0.89772 0.93136 0.88579 0.92474 0.87971 0.90649 0.85334 0.85324 0.94714 0.94722 0.92677 0.85344 0.85386 0.90314 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.15 37.16 0.34 -0.61 16 2 C -0.15 -1.33 2.84 -92.20 -0.26 -1.59 16 3 H 0.09 1.02 7.64 -51.93 -0.40 0.62 16 4 C 0.07 0.54 5.26 34.59 0.18 0.72 16 5 O -0.37 -3.73 10.23 -34.09 -0.35 -4.08 16 6 C 0.06 0.42 6.49 37.83 0.25 0.67 16 7 C 0.08 0.75 6.71 -2.44 -0.02 0.73 16 8 N -0.99 -11.04 2.85 -112.74 -0.32 -11.36 16 9 S 2.69 39.68 5.56 -107.50 -0.60 39.08 16 10 O -0.96 -15.81 15.64 -57.17 -0.89 -16.70 16 11 O -0.96 -16.30 15.65 -57.17 -0.90 -17.20 16 12 C -0.70 -11.36 5.97 -39.58 -0.24 -11.60 16 13 C -0.02 -0.40 9.52 -39.58 -0.38 -0.77 16 14 C -0.15 -2.71 9.70 -39.58 -0.38 -3.09 16 15 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 16 C 0.04 0.96 5.10 -29.03 -0.15 0.81 16 17 C -0.52 -14.05 9.09 -34.44 -0.31 -14.36 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 21 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C -0.15 -2.70 9.70 -39.58 -0.38 -3.09 16 26 C -0.02 -0.41 9.52 -39.59 -0.38 -0.78 16 27 C 0.13 1.19 4.59 -4.14 -0.02 1.17 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.31 7.28 -51.93 -0.38 -0.07 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.33 7.20 -51.93 -0.37 -0.04 16 35 H 0.10 1.03 6.69 -51.93 -0.35 0.68 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.13 1.82 7.61 -52.49 -0.40 1.42 16 38 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 39 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 40 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.13 2.26 8.06 -52.48 -0.42 1.83 16 43 H 0.13 1.79 7.62 -52.48 -0.40 1.39 16 44 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 45 H 0.09 0.80 7.57 -51.93 -0.39 0.41 16 LS Contribution 375.16 15.07 5.65 5.65 Total: -1.00 -33.30 375.16 -10.94 -44.24 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.87 Total: -0.78 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: -2.38 Total: -30.21 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.42 Total: -36.12 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -2.14 Total: -37.98 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 39.68 SS G_CDS: -0.60 Total: 39.08 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.30 -10.94 -44.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885073084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.225 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds